Wall clock time and date at job start Tue Mar 31 2020 20:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86802 * 119.99543 * 2 1 4 4 H 1.48502 * 109.46913 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47411 * 299.99963 * 3 2 1 6 6 H 1.48500 * 109.47508 * 60.00081 * 3 2 1 7 7 C 1.40029 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00015 * 170.11426 * 7 2 1 9 9 C 1.41535 * 119.99840 * 350.10654 * 7 2 1 10 10 C 1.41171 * 120.99722 * 151.73373 * 9 7 2 11 11 C 1.36592 * 119.12891 * 180.02562 * 10 9 7 12 12 N 1.32069 * 121.25539 * 359.71899 * 11 10 9 13 13 C 1.32490 * 122.23370 * 0.57502 * 12 11 10 14 14 N 1.39457 * 119.65087 * 179.70633 * 13 12 11 15 15 C 1.34779 * 119.99784 * 354.33282 * 14 13 12 16 16 O 1.21577 * 119.99855 * 4.72402 * 15 14 13 17 17 N 1.34781 * 120.00030 * 184.72069 * 15 14 13 18 18 C 1.46497 * 120.00099 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47035 * 180.02562 * 18 17 15 20 20 C 1.41377 * 126.80388 * 94.99684 * 19 18 17 21 21 C 1.35447 * 103.98613 * 179.97438 * 20 19 18 22 22 C 1.50703 * 126.77590 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47418 * 300.00200 * 22 21 20 24 24 F 1.39899 * 109.47045 * 60.00821 * 22 21 20 25 25 O 1.34044 * 106.44709 * 0.02562 * 21 20 19 26 26 N 1.20923 * 111.56473 * 359.70723 * 25 21 20 27 27 C 1.38643 * 120.70295 * 359.42894 * 13 12 11 28 28 H 0.96997 * 119.99980 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.43182 * 359.97438 * 10 9 7 30 30 H 1.07996 * 119.36665 * 179.97438 * 11 10 9 31 31 H 0.96993 * 120.00432 * 174.06373 * 14 13 12 32 32 H 0.96999 * 119.99392 * 0.02562 * 17 15 14 33 33 H 1.09010 * 109.46523 * 299.99805 * 18 17 15 34 34 H 1.08996 * 109.47531 * 59.99319 * 18 17 15 35 35 H 1.08005 * 128.00724 * 0.03708 * 20 19 18 36 36 H 1.08997 * 109.46789 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.66591 * 180.29483 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3966 -1.2125 6 1 1.8826 2.3966 1.2125 7 6 2.0077 -1.2127 -0.0005 8 1 3.0756 -1.2195 -0.1611 9 6 1.3158 -2.4294 0.2095 10 6 1.7913 -3.6402 -0.3389 11 6 1.0931 -4.7921 -0.1126 12 7 -0.0112 -4.7930 0.6119 13 6 -0.5067 -3.6865 1.1462 14 7 -1.6802 -3.7485 1.8971 15 6 -2.3658 -4.9059 1.9815 16 8 -1.9175 -5.9162 1.4752 17 7 -3.5482 -4.9431 2.6273 18 6 -4.2932 -6.2012 2.7195 19 6 -5.5711 -5.9732 3.4850 20 6 -6.8461 -5.6952 2.9411 21 6 -7.6466 -5.5765 4.0272 22 6 -9.1239 -5.2786 4.0311 23 9 -9.3519 -4.0423 3.4174 24 9 -9.8033 -6.2801 3.3293 25 8 -6.8652 -5.7752 5.0981 26 7 -5.7207 -5.9987 4.7779 27 6 0.1321 -2.4685 0.9715 28 1 -0.4850 0.8400 0.0004 29 1 2.6948 -3.6552 -0.9304 30 1 1.4531 -5.7205 -0.5307 31 1 -2.0009 -2.9599 2.3618 32 1 -3.9059 -4.1368 3.0309 33 1 -4.5293 -6.5579 1.7169 34 1 -3.6872 -6.9452 3.2365 35 1 -7.1189 -5.6004 1.9004 36 1 -9.4852 -5.2458 5.0589 37 1 -0.2698 -1.5677 1.4113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365072128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:08 Heat of formation + Delta-G solvation = -38.111448 kcal Electronic energy + Delta-G solvation = -27209.992555 eV Core-core repulsion = 22626.395090 eV Total energy + Delta-G solvation = -4583.597465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.15140 -48.16733 -46.36725 -41.47611 -39.88261 -37.04736 -36.06454 -35.52147 -34.61045 -33.77515 -32.42252 -30.63025 -28.36483 -27.89670 -27.75317 -24.48945 -23.86829 -23.50012 -21.92538 -21.81156 -19.97245 -19.47247 -19.23688 -19.08691 -18.35671 -18.06737 -17.83643 -17.27317 -17.07300 -16.60562 -16.22670 -16.07790 -15.99691 -15.26239 -15.03864 -15.03259 -14.79827 -14.69369 -14.51283 -14.35998 -14.30037 -14.02720 -13.83205 -13.17564 -12.88162 -12.70208 -12.67430 -12.43253 -12.11797 -11.86819 -11.75711 -11.54379 -11.29849 -11.19168 -11.04982 -10.28879 -9.89061 -9.64680 -8.86399 -8.60141 -6.57230 -0.03268 0.64268 0.81721 0.99884 1.32506 1.41983 1.55218 1.56469 1.68137 2.18956 2.21571 2.69980 2.83378 2.86162 3.03092 3.14458 3.56631 3.59435 3.75055 3.82366 3.89491 4.11076 4.17976 4.45009 4.48500 4.68243 4.71542 4.82526 4.92247 5.08860 5.22628 5.23767 5.48559 5.63165 5.74579 5.96441 6.24954 6.55282 6.78072 6.82571 6.85697 6.88591 7.51434 7.85712 8.30468 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.002128 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.817645 B =13153.498783 C =14388.493738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.484 4.484 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.292 4.292 11 C 0.113 3.887 12 N -0.576 5.576 13 C 0.351 3.649 14 N -0.659 5.659 15 C 0.696 3.304 16 O -0.573 6.573 17 N -0.729 5.729 18 C 0.224 3.776 19 C -0.005 4.005 20 C -0.161 4.161 21 C -0.120 4.120 22 C 0.369 3.631 23 F -0.191 7.191 24 F -0.190 7.190 25 O 0.145 5.855 26 N -0.349 5.349 27 C -0.255 4.255 28 H 0.290 0.710 29 H 0.117 0.883 30 H 0.150 0.850 31 H 0.420 0.580 32 H 0.408 0.592 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.199 0.801 36 H 0.188 0.812 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.981 -3.973 9.779 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.180 4.180 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.515 4.515 8 H 0.102 0.898 9 C 0.106 3.894 10 C -0.316 4.316 11 C -0.040 4.040 12 N -0.296 5.296 13 C 0.124 3.876 14 N -0.308 5.308 15 C 0.395 3.605 16 O -0.447 6.447 17 N -0.389 5.389 18 C 0.099 3.901 19 C -0.162 4.162 20 C -0.183 4.183 21 C -0.185 4.185 22 C 0.314 3.686 23 F -0.172 7.172 24 F -0.171 7.171 25 O 0.067 5.933 26 N -0.045 5.045 27 C -0.281 4.281 28 H 0.101 0.899 29 H 0.135 0.865 30 H 0.167 0.833 31 H 0.257 0.743 32 H 0.243 0.757 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.216 0.784 36 H 0.205 0.795 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.432 -5.841 10.432 22.816 hybrid contribution 0.296 2.174 -0.854 2.355 sum -19.136 -3.666 9.579 21.711 Atomic orbital electron populations 1.69797 1.08880 1.30689 1.35152 1.26806 0.95694 1.04502 0.90957 0.85042 0.79274 0.75763 0.78934 1.18196 1.19196 1.18713 1.19870 0.96189 0.90847 1.44588 0.89824 1.18028 0.90957 0.93373 0.87003 1.21898 1.05315 0.94517 1.09880 1.21944 0.90281 0.97616 0.94192 1.67322 1.16033 1.28757 1.17465 1.18142 0.86773 0.90306 0.92407 1.42384 1.23607 1.12876 1.51903 1.16075 0.80876 0.83657 0.79871 1.90995 1.69259 1.33466 1.51014 1.44860 1.20334 1.13100 1.60596 1.19230 0.85568 0.85721 0.99544 1.23455 0.97683 1.05366 0.89743 1.22901 0.90621 1.02047 1.02702 1.25245 0.97622 1.08384 0.87219 1.19566 0.81238 0.71445 0.96328 1.93085 1.94526 1.43408 1.86207 1.93079 1.79965 1.61635 1.82457 1.84860 1.12849 1.63273 1.32318 1.73928 0.97841 1.15889 1.16801 1.21523 1.02268 0.95361 1.08978 0.89866 0.86500 0.83319 0.74292 0.75673 0.88282 0.90546 0.78430 0.79534 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.14 10.83 21.84 0.24 -39.90 16 2 C 0.04 1.74 5.30 85.29 0.45 2.19 16 3 Si 0.99 36.00 29.57 68.60 2.03 38.02 16 4 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 5 H -0.27 -9.39 7.11 99.48 0.71 -8.69 16 6 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 7 C -0.48 -25.02 9.13 23.52 0.21 -24.81 16 8 H 0.08 4.15 7.87 -2.91 -0.02 4.12 16 9 C 0.11 6.14 5.58 -21.11 -0.12 6.02 16 10 C -0.29 -14.54 9.85 22.61 0.22 -14.31 16 11 C 0.11 5.49 11.10 84.27 0.94 6.42 16 12 N -0.58 -30.01 7.86 -194.27 -1.53 -31.54 16 13 C 0.35 17.34 7.42 132.76 0.98 18.33 16 14 N -0.66 -26.06 5.40 -322.37 -1.74 -27.80 16 15 C 0.70 26.61 8.52 179.05 1.53 28.14 16 16 O -0.57 -27.07 14.60 -3.96 -0.06 -27.13 16 17 N -0.73 -19.61 5.55 -482.30 -2.68 -22.28 16 18 C 0.22 5.26 6.26 85.63 0.54 5.80 16 19 C -0.01 -0.11 6.70 43.58 0.29 0.19 16 20 C -0.16 -2.39 11.06 22.40 0.25 -2.14 16 21 C -0.12 -1.47 6.92 25.04 0.17 -1.29 16 22 C 0.37 2.52 5.80 71.24 0.41 2.93 16 23 F -0.19 -2.15 17.32 44.97 0.78 -1.37 16 24 F -0.19 -2.03 17.32 44.97 0.78 -1.25 16 25 O 0.15 2.26 11.20 71.60 0.80 3.06 16 26 N -0.35 -7.20 12.07 -49.56 -0.60 -7.80 16 27 C -0.26 -13.18 8.60 23.00 0.20 -12.98 16 28 H 0.29 12.71 8.29 -92.71 -0.77 11.94 16 29 H 0.12 5.28 8.06 -2.91 -0.02 5.26 16 30 H 0.15 6.22 8.06 -2.91 -0.02 6.20 16 31 H 0.42 13.45 8.71 -92.71 -0.81 12.64 16 32 H 0.41 8.79 8.48 -92.71 -0.79 8.00 16 33 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.19 -0.41 8.14 -2.39 -0.02 -0.43 16 37 H 0.13 6.40 6.27 -2.91 -0.02 6.39 16 Total: -1.00 -72.30 343.50 3.69 -68.61 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -0.41 Total: 34.90 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 6.08 Total: 14.48 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -6.31 Total: -129.33 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: 0.74 Total: -24.07 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 1.56 Total: -2.62 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.02 kcal Total: -72.30 3.69 -68.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365072128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.501 kcal (2) G-P(sol) polarization free energy of solvation -72.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds