Wall clock time and date at job start Tue Mar 31 2020 20:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00233 * 2 1 4 4 H 1.48494 * 109.47452 * 270.00065 * 3 2 1 5 5 H 1.48504 * 109.46786 * 30.00134 * 3 2 1 6 6 H 1.48502 * 109.47177 * 149.99528 * 3 2 1 7 7 C 1.37881 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99780 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00255 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.47142 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97659 * 124.99957 * 10 9 7 12 12 C 1.35237 * 107.86287 * 179.73677 * 11 10 9 13 13 C 1.40416 * 107.86796 * 0.26441 * 12 11 10 14 14 N 1.40095 * 125.97894 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99691 * 359.97438 * 14 13 12 16 16 O 1.21596 * 120.00198 * 0.02562 * 15 14 13 17 17 C 1.47589 * 120.00042 * 179.97438 * 15 14 13 18 18 C 1.40298 * 120.49848 * 180.02562 * 17 15 14 19 19 C 1.37953 * 118.35123 * 180.02562 * 18 17 15 20 20 C 1.39164 * 119.26775 * 0.02562 * 19 18 17 21 21 O 1.35503 * 119.52394 * 179.97438 * 20 19 18 22 22 C 1.42904 * 117.00289 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47075 * 300.00323 * 22 21 20 24 24 F 1.39905 * 109.46595 * 60.00342 * 22 21 20 25 25 N 1.32402 * 120.95224 * 0.02562 * 20 19 18 26 26 C 1.31659 * 121.80084 * 359.69849 * 25 20 19 27 27 N 1.31233 * 108.05009 * 359.97438 * 13 12 11 28 28 H 0.97004 * 119.99856 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46894 * 60.00066 * 9 7 2 30 30 H 1.09003 * 109.46917 * 300.00215 * 9 7 2 31 31 H 1.08002 * 126.07135 * 0.02562 * 11 10 9 32 32 H 1.08002 * 126.06677 * 180.24590 * 12 11 10 33 33 H 0.96998 * 120.00258 * 180.02562 * 14 13 12 34 34 H 1.07990 * 120.82214 * 359.97438 * 18 17 15 35 35 H 1.08001 * 120.36053 * 180.02562 * 19 18 17 36 36 H 1.08991 * 109.47211 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.69287 * 180.29189 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.8551 -3.1138 -0.8935 12 6 5.0606 -4.4045 -0.5459 13 6 4.2970 -4.6682 0.6026 14 7 4.2287 -5.8911 1.2827 15 6 4.9387 -6.9482 0.8412 16 8 5.6387 -6.8405 -0.1472 17 6 4.8673 -8.2364 1.5579 18 6 5.6023 -9.3434 1.1078 19 6 5.5023 -10.5260 1.8110 20 6 4.6824 -10.5826 2.9340 21 8 4.5799 -11.7417 3.6283 22 6 3.7238 -11.7392 4.7725 23 9 4.1782 -10.7886 5.6928 24 9 2.4197 -11.4206 4.3783 25 7 4.0002 -9.5204 3.3333 26 6 4.0703 -8.3708 2.6954 27 7 3.6583 -3.5688 0.9275 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.8752 -0.6804 -0.8889 31 1 5.3004 -2.6033 -1.7346 32 1 5.6986 -5.1078 -1.0605 33 1 3.6700 -5.9772 2.0709 34 1 6.2301 -9.2717 0.2320 35 1 6.0542 -11.3983 1.4934 36 1 3.7329 -12.7259 5.2353 37 1 3.5027 -7.5247 3.0537 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411960473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:41 Heat of formation + Delta-G solvation = -45.573213 kcal Electronic energy + Delta-G solvation = -27371.323081 eV Core-core repulsion = 22787.402050 eV Total energy + Delta-G solvation = -4583.921031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.43737 -47.55671 -41.34697 -40.67541 -39.42455 -38.07042 -35.01743 -33.38194 -33.05478 -31.85158 -30.88454 -29.46093 -27.43993 -26.76363 -24.80071 -23.96285 -22.68242 -21.79388 -20.41898 -19.86516 -19.72035 -18.72677 -18.24774 -17.87443 -17.14839 -16.89619 -16.52274 -15.99028 -15.71259 -15.36889 -15.20909 -15.16083 -14.57597 -14.37536 -14.25960 -13.87052 -13.74141 -13.61598 -13.52706 -13.32450 -13.00843 -12.90756 -12.57791 -12.56479 -12.36438 -12.18254 -11.21181 -10.81980 -10.71947 -10.47320 -10.43946 -10.08455 -10.03823 -9.75824 -9.55974 -9.28010 -8.78252 -8.26394 -7.59913 -6.24960 -4.27591 0.18267 0.69497 1.91593 2.30060 2.56072 2.77516 3.09216 3.14412 3.21275 3.23039 3.27047 3.58363 3.67029 3.70042 4.01654 4.21494 4.25434 4.30594 4.37238 4.50141 4.59070 5.02378 5.04829 5.18651 5.38121 5.59193 5.62563 5.69976 6.08519 6.29262 6.33020 6.38116 6.48420 6.62540 7.14590 7.20361 7.24708 7.46630 7.76187 8.04641 8.30786 8.49006 8.84584 9.29715 10.87683 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.019313 B = 0.002119 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.455050 B =13211.997403 C =14275.811023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.317 5.317 11 C 0.052 3.948 12 C -0.282 4.282 13 C 0.259 3.741 14 N -0.624 5.624 15 C 0.575 3.425 16 O -0.511 6.511 17 C -0.206 4.206 18 C 0.019 3.981 19 C -0.182 4.182 20 C 0.327 3.673 21 O -0.316 6.316 22 C 0.424 3.576 23 F -0.191 7.191 24 F -0.190 7.190 25 N -0.525 5.525 26 C 0.183 3.817 27 N -0.293 5.293 28 H 0.268 0.732 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.170 0.830 32 H 0.163 0.837 33 H 0.411 0.589 34 H 0.162 0.838 35 H 0.154 0.846 36 H 0.180 0.820 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.149 -24.256 6.733 27.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.099 5.099 11 C -0.097 4.097 12 C -0.313 4.313 13 C 0.005 3.995 14 N -0.271 5.271 15 C 0.361 3.639 16 O -0.386 6.386 17 C -0.212 4.212 18 C -0.007 4.007 19 C -0.202 4.202 20 C 0.150 3.850 21 O -0.228 6.228 22 C 0.334 3.666 23 F -0.173 7.173 24 F -0.172 7.172 25 N -0.246 5.246 26 C 0.025 3.975 27 N -0.124 5.124 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.187 0.813 32 H 0.180 0.820 33 H 0.247 0.753 34 H 0.179 0.821 35 H 0.172 0.828 36 H 0.196 0.804 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.188 -23.681 7.571 27.264 hybrid contribution 0.699 0.825 -0.636 1.254 sum 11.887 -22.857 6.935 26.680 Atomic orbital electron populations 1.69871 1.06164 1.27330 1.49034 1.24835 0.94872 0.98806 0.94236 0.86908 0.80438 0.83839 0.78925 1.19698 1.20515 1.18858 1.21100 0.87738 0.95734 1.52796 0.89614 1.20072 0.97517 0.72885 0.98272 1.48644 1.32291 1.10226 1.18689 1.22573 0.95864 0.94647 0.96647 1.21540 1.11353 0.96921 1.01510 1.19027 0.99176 0.86477 0.94788 1.42273 1.46731 1.07693 1.30433 1.17699 0.79683 0.82482 0.84061 1.90735 1.39365 1.83229 1.25281 1.20761 1.04696 0.95716 1.00031 1.21577 0.92799 0.89229 0.97079 1.21072 1.02977 1.00564 0.95589 1.19907 0.91029 0.84745 0.89342 1.86783 1.63833 1.31739 1.40410 1.23175 0.73323 0.92150 0.77907 1.93124 1.88519 1.69181 1.66431 1.93131 1.38586 1.94682 1.90789 1.67375 1.23774 1.00092 1.33386 1.22716 0.92269 0.93609 0.88956 1.77412 1.23339 0.95573 1.16069 0.92148 0.93943 0.93261 0.81260 0.82010 0.75273 0.82051 0.82791 0.80393 0.81333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 19.95 27.47 -169.99 -4.67 15.28 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 7 C -0.54 -14.96 9.79 -34.44 -0.34 -15.30 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 C 0.23 5.39 5.33 -5.19 -0.03 5.37 16 10 N -0.32 -7.02 3.67 -62.56 -0.23 -7.25 16 11 C 0.05 0.97 11.43 -17.24 -0.20 0.77 16 12 C -0.28 -5.28 9.60 -39.83 -0.38 -5.66 16 13 C 0.26 4.98 8.11 -154.44 -1.25 3.73 16 14 N -0.62 -9.26 5.40 -12.06 -0.07 -9.32 16 15 C 0.57 7.88 7.74 -12.44 -0.10 7.78 16 16 O -0.51 -8.24 13.54 5.28 0.07 -8.16 16 17 C -0.21 -2.18 5.89 -104.82 -0.62 -2.80 16 18 C 0.02 0.17 9.70 -38.91 -0.38 -0.21 16 19 C -0.18 -1.41 10.02 -39.34 -0.39 -1.80 16 20 C 0.33 3.14 7.19 -16.96 -0.12 3.02 16 21 O -0.32 -2.50 10.40 -18.20 -0.19 -2.69 16 22 C 0.42 2.78 6.05 101.05 0.61 3.39 16 23 F -0.19 -1.74 16.56 2.25 0.04 -1.70 16 24 F -0.19 -1.76 16.56 2.25 0.04 -1.73 16 25 N -0.53 -5.73 8.03 -12.96 -0.10 -5.84 16 26 C 0.18 1.83 10.71 -17.14 -0.18 1.65 16 27 N -0.29 -6.56 12.42 31.43 0.39 -6.17 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 29 H 0.04 0.99 7.20 -51.93 -0.37 0.61 16 30 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 31 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 32 H 0.16 2.89 5.91 -52.49 -0.31 2.58 16 33 H 0.41 4.96 6.88 -40.82 -0.28 4.68 16 34 H 0.16 1.21 7.73 -52.49 -0.41 0.80 16 35 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.18 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.17 1.36 6.41 -52.49 -0.34 1.02 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -36.00 338.03 -5.28 -41.28 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -2.95 Total: 4.91 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -3.47 Total: 1.98 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.77 Total: -54.25 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.12 Total: -10.86 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.07 Total: -3.43 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.67 Total: 15.28 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.00 -5.28 -41.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411960473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.297 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds