Wall clock time and date at job start Tue Mar 31 2020 20:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00233 * 2 1 4 4 H 1.48494 * 109.47452 * 270.00065 * 3 2 1 5 5 H 1.48504 * 109.46786 * 30.00134 * 3 2 1 6 6 H 1.48502 * 109.47177 * 149.99528 * 3 2 1 7 7 C 1.37881 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99780 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00255 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.47142 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97659 * 124.99957 * 10 9 7 12 12 C 1.35237 * 107.86287 * 179.73677 * 11 10 9 13 13 C 1.40416 * 107.86796 * 0.26441 * 12 11 10 14 14 N 1.40095 * 125.97894 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99691 * 359.97438 * 14 13 12 16 16 O 1.21596 * 120.00198 * 0.02562 * 15 14 13 17 17 C 1.47589 * 120.00042 * 179.97438 * 15 14 13 18 18 C 1.40298 * 120.49848 * 180.02562 * 17 15 14 19 19 C 1.37953 * 118.35123 * 180.02562 * 18 17 15 20 20 C 1.39164 * 119.26775 * 0.02562 * 19 18 17 21 21 O 1.35503 * 119.52394 * 179.97438 * 20 19 18 22 22 C 1.42904 * 117.00289 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47075 * 300.00323 * 22 21 20 24 24 F 1.39905 * 109.46595 * 60.00342 * 22 21 20 25 25 N 1.32402 * 120.95224 * 0.02562 * 20 19 18 26 26 C 1.31659 * 121.80084 * 359.69849 * 25 20 19 27 27 N 1.31233 * 108.05009 * 359.97438 * 13 12 11 28 28 H 0.97004 * 119.99856 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46894 * 60.00066 * 9 7 2 30 30 H 1.09003 * 109.46917 * 300.00215 * 9 7 2 31 31 H 1.08002 * 126.07135 * 0.02562 * 11 10 9 32 32 H 1.08002 * 126.06677 * 180.24590 * 12 11 10 33 33 H 0.96998 * 120.00258 * 180.02562 * 14 13 12 34 34 H 1.07990 * 120.82214 * 359.97438 * 18 17 15 35 35 H 1.08001 * 120.36053 * 180.02562 * 19 18 17 36 36 H 1.08991 * 109.47211 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.69287 * 180.29189 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.8551 -3.1138 -0.8935 12 6 5.0606 -4.4045 -0.5459 13 6 4.2970 -4.6682 0.6026 14 7 4.2287 -5.8911 1.2827 15 6 4.9387 -6.9482 0.8412 16 8 5.6387 -6.8405 -0.1472 17 6 4.8673 -8.2364 1.5579 18 6 5.6023 -9.3434 1.1078 19 6 5.5023 -10.5260 1.8110 20 6 4.6824 -10.5826 2.9340 21 8 4.5799 -11.7417 3.6283 22 6 3.7238 -11.7392 4.7725 23 9 4.1782 -10.7886 5.6928 24 9 2.4197 -11.4206 4.3783 25 7 4.0002 -9.5204 3.3333 26 6 4.0703 -8.3708 2.6954 27 7 3.6583 -3.5688 0.9275 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.8752 -0.6804 -0.8889 31 1 5.3004 -2.6033 -1.7346 32 1 5.6986 -5.1078 -1.0605 33 1 3.6700 -5.9772 2.0709 34 1 6.2301 -9.2717 0.2320 35 1 6.0542 -11.3983 1.4934 36 1 3.7329 -12.7259 5.2353 37 1 3.5027 -7.5247 3.0537 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411960473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:41 Heat of formation + Delta-G solvation = -72.527719 kcal Electronic energy + Delta-G solvation = -27372.491916 eV Core-core repulsion = 22787.402050 eV Total energy + Delta-G solvation = -4585.089866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.03720 -48.17890 -42.40391 -41.83538 -40.51877 -38.82490 -36.37132 -35.25718 -33.81308 -33.34115 -32.03497 -30.97991 -29.05332 -27.54572 -25.72110 -24.86966 -24.20285 -22.98457 -21.89892 -21.17534 -20.36701 -19.37338 -19.08480 -18.96636 -18.84720 -18.11390 -17.57770 -17.05109 -16.71175 -16.50931 -16.28046 -16.17197 -15.94090 -15.44285 -15.28827 -14.91236 -14.85407 -14.50846 -14.45265 -14.36185 -14.13151 -13.97107 -13.90022 -13.79969 -13.59968 -13.10601 -12.99383 -12.53264 -12.34103 -11.83989 -11.67656 -11.52065 -11.27252 -11.20117 -10.86797 -10.80556 -10.04049 -9.78796 -9.13054 -8.37277 -6.47650 -0.62544 0.00077 0.99252 1.24121 1.36904 1.37604 1.41605 1.49566 1.50265 2.13553 2.26841 2.29412 2.57392 2.61414 2.95408 2.96654 3.37089 3.60104 3.64885 3.76029 3.76250 3.86678 3.95182 4.19786 4.43332 4.51459 4.60315 4.72108 4.83400 4.89473 4.91547 5.03117 5.12232 5.24867 5.62392 5.83803 6.00041 6.12511 6.40265 6.40962 6.58418 6.86894 7.00503 7.15359 8.79836 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.019313 B = 0.002119 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.455050 B =13211.997403 C =14275.811023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.239 1.239 7 C -0.547 4.547 8 H 0.026 0.974 9 C 0.239 3.761 10 N -0.343 5.343 11 C 0.062 3.938 12 C -0.292 4.292 13 C 0.264 3.736 14 N -0.622 5.622 15 C 0.580 3.420 16 O -0.535 6.535 17 C -0.216 4.216 18 C 0.023 3.977 19 C -0.169 4.169 20 C 0.317 3.683 21 O -0.312 6.312 22 C 0.414 3.586 23 F -0.208 7.208 24 F -0.209 7.209 25 N -0.548 5.548 26 C 0.181 3.819 27 N -0.346 5.346 28 H 0.272 0.728 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.213 0.787 32 H 0.173 0.827 33 H 0.421 0.579 34 H 0.176 0.824 35 H 0.188 0.812 36 H 0.239 0.761 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.723 -24.960 6.413 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.585 4.585 8 H 0.045 0.955 9 C 0.119 3.881 10 N -0.125 5.125 11 C -0.086 4.086 12 C -0.323 4.323 13 C 0.010 3.990 14 N -0.271 5.271 15 C 0.368 3.632 16 O -0.411 6.411 17 C -0.222 4.222 18 C -0.002 4.002 19 C -0.189 4.189 20 C 0.139 3.861 21 O -0.223 6.223 22 C 0.326 3.674 23 F -0.190 7.190 24 F -0.191 7.191 25 N -0.270 5.270 26 C 0.023 3.977 27 N -0.177 5.177 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.229 0.771 32 H 0.190 0.810 33 H 0.259 0.741 34 H 0.193 0.807 35 H 0.205 0.795 36 H 0.254 0.746 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 13.780 -24.441 7.264 28.984 hybrid contribution -0.132 0.777 -0.501 0.934 sum 13.649 -23.664 6.764 28.143 Atomic orbital electron populations 1.70053 1.08609 1.28800 1.50689 1.25935 0.95767 1.03588 0.93237 0.85613 0.79502 0.77158 0.80082 1.17681 1.20743 1.16171 1.21235 0.90542 0.93723 1.53011 0.95540 1.19904 0.94132 0.74331 0.99727 1.48528 1.33923 1.10025 1.20016 1.23292 0.94169 0.94666 0.96485 1.21783 1.11625 0.97350 1.01505 1.19405 0.97785 0.87014 0.94838 1.42420 1.47296 1.06710 1.30708 1.18134 0.78514 0.82848 0.83661 1.90702 1.40308 1.83689 1.26409 1.20525 1.06446 0.94668 1.00531 1.21796 0.92212 0.88863 0.97370 1.21383 1.02084 1.01117 0.94346 1.20316 0.90921 0.84889 0.89950 1.86801 1.64004 1.30831 1.40705 1.24239 0.72037 0.93873 0.77288 1.93086 1.88654 1.70303 1.66976 1.93091 1.40032 1.94973 1.90994 1.67394 1.24796 1.00653 1.34127 1.22848 0.92180 0.93913 0.88768 1.77327 1.25612 0.96883 1.17877 0.91897 0.93606 0.89905 0.77053 0.81011 0.74066 0.80692 0.79516 0.74559 0.80432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.18 13.96 21.45 0.30 -57.88 16 2 C 0.01 0.76 5.47 84.66 0.46 1.23 16 3 Si 0.96 40.53 27.47 68.60 1.88 42.41 16 4 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16 7 C -0.55 -31.48 9.79 25.60 0.25 -31.23 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 9 C 0.24 10.94 5.33 85.63 0.46 11.39 16 10 N -0.34 -15.16 3.67 -351.85 -1.29 -16.45 16 11 C 0.06 2.21 11.43 83.52 0.96 3.17 16 12 C -0.29 -10.70 9.60 22.11 0.21 -10.49 16 13 C 0.26 10.30 8.11 133.34 1.08 11.38 16 14 N -0.62 -18.74 5.40 -310.33 -1.68 -20.42 16 15 C 0.58 15.75 7.74 86.71 0.67 16.42 16 16 O -0.53 -16.87 13.54 -4.02 -0.05 -16.93 16 17 C -0.22 -4.42 5.89 -20.00 -0.12 -4.54 16 18 C 0.02 0.36 9.70 22.70 0.22 0.58 16 19 C -0.17 -2.21 10.02 22.42 0.22 -1.99 16 20 C 0.32 5.56 7.19 84.83 0.61 6.17 16 21 O -0.31 -4.28 10.40 -88.04 -0.92 -5.20 16 22 C 0.41 4.65 6.05 113.37 0.69 5.33 16 23 F -0.21 -3.59 16.56 44.97 0.74 -2.84 16 24 F -0.21 -3.69 16.56 44.97 0.74 -2.95 16 25 N -0.55 -11.63 8.03 -307.81 -2.47 -14.10 16 26 C 0.18 3.60 10.71 85.03 0.91 4.51 16 27 N -0.35 -15.94 12.42 -54.48 -0.68 -16.61 16 28 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.05 2.06 7.20 -2.39 -0.02 2.04 16 30 H 0.08 3.23 7.50 -2.39 -0.02 3.22 16 31 H 0.21 5.44 8.06 -2.91 -0.02 5.42 16 32 H 0.17 5.94 5.91 -2.91 -0.02 5.92 16 33 H 0.42 10.55 6.88 -92.71 -0.64 9.91 16 34 H 0.18 2.25 7.73 -2.92 -0.02 2.23 16 35 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.24 -0.33 8.14 -2.39 -0.02 -0.35 16 37 H 0.18 2.95 6.41 -2.91 -0.02 2.93 16 Total: -1.00 -82.75 338.03 3.69 -79.06 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.47 Total: 19.96 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 6.62 Total: 11.94 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -5.81 Total: -125.46 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.97 Total: -22.13 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 1.49 Total: -5.79 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.88 Total: 42.41 kcal Total: -82.75 3.69 -79.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411960473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.532 kcal (2) G-P(sol) polarization free energy of solvation -82.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds