Wall clock time and date at job start Tue Mar 31 2020 20:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47322 * 269.99897 * 3 2 1 5 5 H 1.48497 * 109.47077 * 29.99986 * 3 2 1 6 6 H 1.48498 * 109.47032 * 149.99936 * 3 2 1 7 7 C 1.39925 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99752 * 196.78323 * 7 2 1 9 9 C 1.41401 * 120.00441 * 16.78611 * 7 2 1 10 10 C 1.40781 * 120.20820 * 25.16279 * 9 7 2 11 11 C 1.37643 * 119.88558 * 180.02562 * 10 9 7 12 12 C 1.38539 * 120.31866 * 0.02562 * 11 10 9 13 13 C 1.39237 * 120.43001 * 359.97438 * 12 11 10 14 14 N 1.39959 * 119.94533 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99830 * 145.77392 * 14 13 12 16 16 O 1.21584 * 120.00052 * 354.85485 * 15 14 13 17 17 N 1.34776 * 119.99946 * 174.57202 * 15 14 13 18 18 C 1.46501 * 119.99994 * 180.27592 * 17 15 14 19 19 C 1.50700 * 109.46810 * 180.02562 * 18 17 15 20 20 N 1.31131 * 126.55071 * 89.71847 * 19 18 17 21 21 C 1.34498 * 105.61664 * 179.91374 * 20 19 18 22 22 C 1.50696 * 126.28762 * 180.12425 * 21 20 19 23 23 F 1.39900 * 109.47381 * 300.23760 * 22 21 20 24 24 F 1.39900 * 109.47048 * 60.24032 * 22 21 20 25 25 N 1.29947 * 107.42194 * 0.34690 * 21 20 19 26 26 O 1.21296 * 110.25113 * 359.78020 * 25 21 20 27 27 C 1.38279 * 120.10901 * 0.25248 * 13 12 11 28 28 H 0.97007 * 120.00093 * 0.02562 * 1 2 3 29 29 H 1.07992 * 120.05793 * 0.02601 * 10 9 7 30 30 H 1.08001 * 119.84253 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.78432 * 180.02562 * 12 11 10 32 32 H 0.96998 * 120.00318 * 325.77854 * 14 13 12 33 33 H 0.97000 * 119.99652 * 0.27841 * 17 15 14 34 34 H 1.08995 * 109.47105 * 300.00061 * 18 17 15 35 35 H 1.08997 * 109.46960 * 60.00540 * 18 17 15 36 36 H 1.09000 * 109.47135 * 180.23285 * 22 21 20 37 37 H 1.08001 * 120.15819 * 179.72726 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2316 0.2706 9 6 1.3461 -2.4105 -0.3526 10 6 0.2106 -2.3743 -1.1840 11 6 -0.4287 -3.5450 -1.5231 12 6 0.0394 -4.7600 -1.0497 13 6 1.1612 -4.8112 -0.2265 14 7 1.6250 -6.0440 0.2464 15 6 2.9467 -6.2467 0.4162 16 8 3.7417 -5.3940 0.0711 17 7 3.3866 -7.3921 0.9738 18 6 4.8228 -7.6098 1.1639 19 6 5.0467 -8.9571 1.8007 20 7 5.2170 -10.0975 1.1762 21 6 5.3807 -11.0186 2.1425 22 6 5.6143 -12.4933 1.9386 23 9 4.5370 -13.0434 1.2358 24 9 6.7927 -12.6822 1.2086 25 7 5.2956 -10.4040 3.2843 26 8 5.1039 -9.2191 3.1100 27 6 1.8144 -3.6454 0.1291 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1581 -1.4295 -1.5551 30 1 -1.2995 -3.5165 -2.1614 31 1 -0.4687 -5.6734 -1.3215 32 1 0.9954 -6.7527 0.4520 33 1 2.7523 -8.0723 1.2492 34 1 5.3263 -7.5769 0.1977 35 1 5.2260 -6.8304 1.8105 36 1 5.7047 -12.9843 2.9076 37 1 2.6820 -3.6838 0.7711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413570828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:59 Heat of formation + Delta-G solvation = -24.639383 kcal Electronic energy + Delta-G solvation = -27182.657794 eV Core-core repulsion = 22599.644522 eV Total energy + Delta-G solvation = -4583.013272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.71381 -47.73410 -46.42943 -40.11883 -37.53956 -36.72907 -35.52820 -34.45430 -33.29792 -32.84721 -29.81768 -28.97105 -28.44632 -27.12820 -25.28633 -24.27823 -22.69738 -21.79242 -20.89481 -20.28971 -19.03443 -18.95397 -18.29775 -17.96264 -17.74224 -17.61944 -17.12087 -16.18423 -15.66665 -15.26370 -14.94853 -14.69088 -14.58610 -14.45255 -14.06434 -14.03554 -13.78424 -13.59114 -13.13878 -12.94171 -12.80153 -12.59098 -12.28229 -12.16311 -11.85083 -11.66074 -11.22615 -11.13299 -11.04558 -10.92124 -10.45911 -10.28482 -9.75381 -9.58066 -9.32640 -9.11688 -9.04802 -7.44576 -6.92050 -6.70544 -4.32976 0.23629 1.22286 1.92420 2.19245 2.66477 2.80640 2.92186 2.98534 3.10473 3.15104 3.22305 3.27666 3.57493 3.93855 3.97216 4.13639 4.15858 4.36746 4.63942 4.66289 4.89300 5.15341 5.15807 5.71467 6.07106 6.22758 6.39590 6.59800 6.72046 7.04052 7.08482 7.20589 7.26304 7.29174 7.64585 7.76752 7.98201 8.10737 8.21005 8.32782 8.65661 8.80553 8.95494 8.99629 10.22494 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.023646 B = 0.001977 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.870088 B =14158.175130 C =14948.685067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.171 4.171 11 C -0.092 4.092 12 C -0.262 4.262 13 C 0.167 3.833 14 N -0.675 5.675 15 C 0.706 3.294 16 O -0.558 6.558 17 N -0.751 5.751 18 C 0.236 3.764 19 C 0.184 3.816 20 N -0.437 5.437 21 C 0.088 3.912 22 C 0.380 3.620 23 F -0.178 7.178 24 F -0.178 7.178 25 N -0.341 5.341 26 O 0.111 5.889 27 C -0.210 4.210 28 H 0.280 0.720 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.396 0.604 33 H 0.398 0.602 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.146 0.854 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.375 -19.853 6.012 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.191 4.191 11 C -0.111 4.111 12 C -0.283 4.283 13 C 0.075 3.925 14 N -0.322 5.322 15 C 0.407 3.593 16 O -0.432 6.432 17 N -0.412 5.412 18 C 0.110 3.890 19 C -0.037 4.037 20 N -0.170 5.170 21 C -0.186 4.186 22 C 0.324 3.676 23 F -0.159 7.159 24 F -0.159 7.159 25 N -0.041 5.041 26 O 0.043 5.957 27 C -0.231 4.231 28 H 0.090 0.910 29 H 0.137 0.863 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.229 0.771 33 H 0.232 0.768 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.163 0.837 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.076 -19.660 6.103 22.113 hybrid contribution -0.361 0.052 0.148 0.393 sum 7.716 -19.608 6.251 21.979 Atomic orbital electron populations 1.69829 1.07523 1.29101 1.35652 1.25904 0.94743 1.01282 0.92282 0.86303 0.80507 0.80537 0.79318 1.19285 1.20406 1.18596 1.19585 0.97796 0.90898 1.40408 0.90309 1.17492 0.90887 0.91645 0.88317 1.21356 0.99359 0.96867 1.01543 1.20454 0.98542 0.92658 0.99450 1.20007 1.02544 0.96929 1.08839 1.17209 0.96028 0.82339 0.96940 1.42521 1.04904 1.16059 1.68670 1.15737 0.83312 0.81459 0.78840 1.91020 1.54047 1.43378 1.54803 1.44920 1.06191 1.20904 1.69141 1.19496 0.83614 0.84347 1.01520 1.28955 0.96491 0.98278 0.80001 1.71983 1.16670 0.97907 1.30413 1.26418 1.06058 1.00562 0.85567 1.19195 0.72751 0.83454 0.92195 1.93096 1.55614 1.85563 1.81657 1.93094 1.47248 1.95241 1.80367 1.74654 1.16154 0.90532 1.22764 1.85380 1.62626 1.19191 1.28550 1.20983 1.04362 0.90860 1.06919 0.90957 0.86315 0.89020 0.89321 0.77066 0.76847 0.86209 0.86858 0.83652 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.48 10.94 55.55 0.61 -19.87 16 2 C 0.08 1.90 5.16 -17.35 -0.09 1.81 16 3 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.34 9.05 -37.75 -0.34 -12.68 16 8 H 0.08 2.09 7.90 -52.48 -0.41 1.68 16 9 C 0.12 3.23 5.57 -106.85 -0.59 2.64 16 10 C -0.17 -4.44 8.69 -38.84 -0.34 -4.77 16 11 C -0.09 -2.11 10.02 -39.69 -0.40 -2.51 16 12 C -0.26 -5.61 9.97 -39.10 -0.39 -6.00 16 13 C 0.17 3.64 6.25 -83.76 -0.52 3.12 16 14 N -0.68 -11.26 5.34 -14.27 -0.08 -11.33 16 15 C 0.71 11.46 8.29 -86.91 -0.72 10.74 16 16 O -0.56 -11.55 14.10 5.29 0.07 -11.48 16 17 N -0.75 -8.11 5.55 -66.42 -0.37 -8.48 16 18 C 0.24 2.13 6.30 -5.19 -0.03 2.10 16 19 C 0.18 1.63 7.88 -13.06 -0.10 1.53 16 20 N -0.44 -4.58 11.55 -9.87 -0.11 -4.69 16 21 C 0.09 0.82 7.65 -156.37 -1.20 -0.37 16 22 C 0.38 2.67 5.86 36.00 0.21 2.88 16 23 F -0.18 -1.55 17.32 2.25 0.04 -1.51 16 24 F -0.18 -1.54 17.32 2.25 0.04 -1.50 16 25 N -0.34 -3.18 12.16 30.90 0.38 -2.80 16 26 O 0.11 0.99 11.31 18.10 0.20 1.19 16 27 C -0.21 -5.28 8.39 -38.68 -0.32 -5.60 16 28 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 29 H 0.12 3.16 6.17 -52.49 -0.32 2.83 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.40 5.01 8.84 -40.82 -0.36 4.65 16 33 H 0.40 3.31 8.48 -40.82 -0.35 2.96 16 34 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.15 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.11 2.76 6.48 -52.49 -0.34 2.42 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -32.39 342.27 -6.97 -39.35 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -3.03 Total: 9.23 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -4.84 Total: -7.12 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.42 Total: -47.17 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.28 Total: -10.29 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.01 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.39 -6.97 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413570828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.715 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds