Wall clock time and date at job start Tue Mar 31 2020 20:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47322 * 269.99897 * 3 2 1 5 5 H 1.48497 * 109.47077 * 29.99986 * 3 2 1 6 6 H 1.48498 * 109.47032 * 149.99936 * 3 2 1 7 7 C 1.39925 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99752 * 196.78323 * 7 2 1 9 9 C 1.41401 * 120.00441 * 16.78611 * 7 2 1 10 10 C 1.40781 * 120.20820 * 25.16279 * 9 7 2 11 11 C 1.37643 * 119.88558 * 180.02562 * 10 9 7 12 12 C 1.38539 * 120.31866 * 0.02562 * 11 10 9 13 13 C 1.39237 * 120.43001 * 359.97438 * 12 11 10 14 14 N 1.39959 * 119.94533 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99830 * 145.77392 * 14 13 12 16 16 O 1.21584 * 120.00052 * 354.85485 * 15 14 13 17 17 N 1.34776 * 119.99946 * 174.57202 * 15 14 13 18 18 C 1.46501 * 119.99994 * 180.27592 * 17 15 14 19 19 C 1.50700 * 109.46810 * 180.02562 * 18 17 15 20 20 N 1.31131 * 126.55071 * 89.71847 * 19 18 17 21 21 C 1.34498 * 105.61664 * 179.91374 * 20 19 18 22 22 C 1.50696 * 126.28762 * 180.12425 * 21 20 19 23 23 F 1.39900 * 109.47381 * 300.23760 * 22 21 20 24 24 F 1.39900 * 109.47048 * 60.24032 * 22 21 20 25 25 N 1.29947 * 107.42194 * 0.34690 * 21 20 19 26 26 O 1.21296 * 110.25113 * 359.78020 * 25 21 20 27 27 C 1.38279 * 120.10901 * 0.25248 * 13 12 11 28 28 H 0.97007 * 120.00093 * 0.02562 * 1 2 3 29 29 H 1.07992 * 120.05793 * 0.02601 * 10 9 7 30 30 H 1.08001 * 119.84253 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.78432 * 180.02562 * 12 11 10 32 32 H 0.96998 * 120.00318 * 325.77854 * 14 13 12 33 33 H 0.97000 * 119.99652 * 0.27841 * 17 15 14 34 34 H 1.08995 * 109.47105 * 300.00061 * 18 17 15 35 35 H 1.08997 * 109.46960 * 60.00540 * 18 17 15 36 36 H 1.09000 * 109.47135 * 180.23285 * 22 21 20 37 37 H 1.08001 * 120.15819 * 179.72726 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2316 0.2706 9 6 1.3461 -2.4105 -0.3526 10 6 0.2106 -2.3743 -1.1840 11 6 -0.4287 -3.5450 -1.5231 12 6 0.0394 -4.7600 -1.0497 13 6 1.1612 -4.8112 -0.2265 14 7 1.6250 -6.0440 0.2464 15 6 2.9467 -6.2467 0.4162 16 8 3.7417 -5.3940 0.0711 17 7 3.3866 -7.3921 0.9738 18 6 4.8228 -7.6098 1.1639 19 6 5.0467 -8.9571 1.8007 20 7 5.2170 -10.0975 1.1762 21 6 5.3807 -11.0186 2.1425 22 6 5.6143 -12.4933 1.9386 23 9 4.5370 -13.0434 1.2358 24 9 6.7927 -12.6822 1.2086 25 7 5.2956 -10.4040 3.2843 26 8 5.1039 -9.2191 3.1100 27 6 1.8144 -3.6454 0.1291 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1581 -1.4295 -1.5551 30 1 -1.2995 -3.5165 -2.1614 31 1 -0.4687 -5.6734 -1.3215 32 1 0.9954 -6.7527 0.4520 33 1 2.7523 -8.0723 1.2492 34 1 5.3263 -7.5769 0.1977 35 1 5.2260 -6.8304 1.8105 36 1 5.7047 -12.9843 2.9076 37 1 2.6820 -3.6838 0.7711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413570828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:58 Heat of formation + Delta-G solvation = -48.388982 kcal Electronic energy + Delta-G solvation = -27183.687654 eV Core-core repulsion = 22599.644522 eV Total energy + Delta-G solvation = -4584.043132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.30763 -48.34038 -47.15217 -41.49090 -39.20485 -37.52712 -36.62898 -36.05875 -34.85395 -33.91322 -31.70277 -30.29967 -29.16509 -28.32716 -27.18815 -25.01778 -23.67285 -23.05846 -22.67956 -21.76042 -19.96271 -19.76295 -19.51951 -19.16716 -18.50330 -18.36772 -17.82233 -17.57687 -17.15723 -16.65518 -16.38049 -16.17982 -15.94884 -15.20467 -15.09778 -14.98521 -14.68071 -14.63326 -14.56296 -14.25347 -13.98211 -13.69465 -13.47284 -13.33708 -12.97548 -12.88339 -12.82475 -12.74622 -12.59948 -12.14861 -12.00726 -11.77325 -11.51106 -11.24147 -10.97370 -10.77610 -10.37365 -9.34605 -8.69815 -8.55311 -6.32072 -0.49544 0.47760 0.95781 1.06494 1.16530 1.39574 1.52209 1.53026 1.56725 1.76731 2.13463 2.24091 2.26328 2.78466 2.82718 3.21368 3.27592 3.59025 3.60116 3.78764 3.92547 4.16540 4.40755 4.42954 4.51692 4.68410 5.04134 5.07530 5.15751 5.18975 5.20547 5.36894 5.69055 5.85181 6.05553 6.14959 6.17832 6.39954 6.54813 6.73470 6.97090 6.99096 7.06233 7.51402 8.37151 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.023646 B = 0.001977 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.870088 B =14158.175130 C =14948.685067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.499 4.499 8 H 0.065 0.935 9 C 0.088 3.912 10 C -0.199 4.199 11 C -0.092 4.092 12 C -0.251 4.251 13 C 0.177 3.823 14 N -0.667 5.667 15 C 0.708 3.292 16 O -0.605 6.605 17 N -0.728 5.728 18 C 0.238 3.762 19 C 0.196 3.804 20 N -0.460 5.460 21 C 0.083 3.917 22 C 0.377 3.623 23 F -0.189 7.189 24 F -0.189 7.189 25 N -0.343 5.343 26 O 0.113 5.887 27 C -0.233 4.233 28 H 0.288 0.712 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.419 0.581 33 H 0.414 0.586 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.192 0.808 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.068 -21.578 6.391 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.529 4.529 8 H 0.083 0.917 9 C 0.085 3.915 10 C -0.219 4.219 11 C -0.111 4.111 12 C -0.272 4.272 13 C 0.083 3.917 14 N -0.315 5.315 15 C 0.408 3.592 16 O -0.482 6.482 17 N -0.388 5.388 18 C 0.112 3.888 19 C -0.025 4.025 20 N -0.193 5.193 21 C -0.192 4.192 22 C 0.322 3.678 23 F -0.170 7.170 24 F -0.170 7.170 25 N -0.043 5.043 26 O 0.045 5.955 27 C -0.255 4.255 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.139 0.861 31 H 0.148 0.852 32 H 0.256 0.744 33 H 0.251 0.749 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.208 0.792 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.749 -21.479 6.515 23.745 hybrid contribution -0.276 0.380 0.043 0.471 sum 7.474 -21.099 6.558 23.324 Atomic orbital electron populations 1.69865 1.08706 1.30434 1.35913 1.26684 0.95576 1.04213 0.91313 0.85237 0.78992 0.76117 0.79538 1.18649 1.18844 1.18719 1.19738 0.97569 0.92552 1.43054 0.91667 1.17837 0.91891 0.92521 0.89216 1.21312 1.00167 0.97526 1.02918 1.20815 0.98903 0.92226 0.99133 1.20432 1.01818 0.97964 1.07025 1.17217 0.95361 0.83278 0.95796 1.42265 1.05775 1.15012 1.68441 1.15818 0.82681 0.82102 0.78607 1.91006 1.55139 1.45410 1.56694 1.44597 1.07456 1.19448 1.67291 1.19571 0.82289 0.84875 1.02056 1.28697 0.96101 0.97721 0.79945 1.71994 1.17422 0.98633 1.31284 1.26863 1.05581 1.01485 0.85225 1.19773 0.71863 0.82546 0.93577 1.93071 1.56205 1.85553 1.82147 1.93070 1.47885 1.95180 1.80884 1.74649 1.16317 0.90552 1.22783 1.85379 1.62557 1.19203 1.28381 1.20966 1.04691 0.91937 1.07909 0.90121 0.87949 0.86102 0.85168 0.74372 0.74942 0.86073 0.85654 0.79190 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.54 10.94 21.82 0.24 -43.30 16 2 C 0.04 1.91 5.16 85.25 0.44 2.35 16 3 Si 0.98 39.57 29.59 68.60 2.03 41.60 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.50 -28.39 9.05 23.46 0.21 -28.18 16 8 H 0.07 3.71 7.90 -2.91 -0.02 3.68 16 9 C 0.09 4.96 5.57 -21.31 -0.12 4.85 16 10 C -0.20 -10.57 8.69 22.75 0.20 -10.37 16 11 C -0.09 -4.12 10.02 22.20 0.22 -3.90 16 12 C -0.25 -10.17 9.97 22.58 0.23 -9.94 16 13 C 0.18 7.58 6.25 38.09 0.24 7.82 16 14 N -0.67 -20.95 5.34 -317.33 -1.70 -22.65 16 15 C 0.71 22.17 8.29 179.05 1.48 23.65 16 16 O -0.60 -25.23 14.10 -3.98 -0.06 -25.29 16 17 N -0.73 -14.32 5.55 -482.30 -2.68 -16.99 16 18 C 0.24 3.93 6.30 85.63 0.54 4.47 16 19 C 0.20 3.15 7.88 88.38 0.70 3.85 16 20 N -0.46 -8.90 11.55 -303.20 -3.50 -12.40 16 21 C 0.08 1.39 7.65 138.46 1.06 2.45 16 22 C 0.38 4.53 5.86 71.23 0.42 4.95 16 23 F -0.19 -2.96 17.32 44.97 0.78 -2.18 16 24 F -0.19 -2.98 17.32 44.97 0.78 -2.20 16 25 N -0.34 -5.71 12.16 -60.32 -0.73 -6.44 16 26 O 0.11 1.80 11.31 74.84 0.85 2.65 16 27 C -0.23 -12.09 8.39 22.85 0.19 -11.90 16 28 H 0.29 13.69 8.30 -92.70 -0.77 12.92 16 29 H 0.10 5.66 6.17 -2.91 -0.02 5.64 16 30 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 32 H 0.42 9.23 8.84 -92.71 -0.82 8.41 16 33 H 0.41 5.74 8.48 -92.71 -0.79 4.95 16 34 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.13 1.86 8.14 -2.39 -0.02 1.85 16 36 H 0.19 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 4.90 6.48 -2.91 -0.02 4.88 16 Total: -1.00 -73.39 342.27 1.39 -72.00 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.42 Total: 25.09 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 5.81 Total: -9.89 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -8.37 Total: -101.79 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.79 Total: -22.64 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 1.56 Total: -4.38 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -73.39 1.39 -72.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413570828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.613 kcal (2) G-P(sol) polarization free energy of solvation -73.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds