Wall clock time and date at job start Tue Mar 31 2020 20:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 S 1.81397 * 109.46883 * 180.02562 * 8 6 5 10 10 C 1.76199 * 103.00089 * 180.02562 * 9 8 6 11 11 N 1.31163 * 125.55637 * 359.69127 * 10 9 8 12 12 N 1.40413 * 106.90397 * 179.86149 * 11 10 9 13 13 H 0.96995 * 126.75972 * 180.13795 * 12 11 10 14 14 C 1.34763 * 106.47978 * 0.40180 * 12 11 10 15 15 O 1.35433 * 125.97014 * 179.78266 * 14 12 11 16 16 N 1.31409 * 108.06105 * 359.75496 * 14 12 11 17 17 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46500 * 125.97897 * 359.96594 * 18 2 1 20 20 C 1.50698 * 109.46965 * 89.99833 * 19 18 2 21 21 H 1.08000 * 120.00464 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99358 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00418 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99496 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47105 * 90.00179 * 24 22 20 26 26 H 1.48499 * 109.46684 * 210.00001 * 24 22 20 27 27 H 1.48496 * 109.47247 * 330.00058 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 32 32 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 33 33 H 1.08995 * 109.46887 * 299.99916 * 8 6 5 34 34 H 1.08992 * 109.46796 * 60.00190 * 8 6 5 35 35 H 0.96703 * 113.99539 * 269.99294 * 15 14 12 36 36 H 1.08994 * 109.46840 * 210.00162 * 19 18 2 37 37 H 1.09004 * 109.46443 * 329.99889 * 19 18 2 38 38 H 0.96998 * 120.00265 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 16 5.3479 5.4382 0.0318 10 6 6.8836 6.3020 0.0363 11 7 8.0715 5.7458 0.0382 12 7 9.0109 6.7894 0.0384 13 1 9.9768 6.7010 0.0377 14 6 8.3062 7.9381 0.0456 15 8 8.8246 9.1893 0.0525 16 7 7.0283 7.6321 0.0443 17 7 3.6337 -0.6577 -0.0036 18 7 2.3016 -1.0910 -0.0059 19 6 1.8500 -2.4847 -0.0128 20 6 1.6945 -2.9553 -1.4359 21 1 1.9108 -2.2836 -2.2535 22 6 1.2760 -4.2434 -1.6941 23 7 1.0121 -5.0611 -0.6985 24 14 1.0838 -4.8270 -3.4582 25 1 2.3645 -5.4139 -3.9277 26 1 0.0141 -5.8548 -3.5257 27 1 0.7200 -3.6763 -4.3235 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 -0.0006 32 1 5.6584 1.0776 0.0055 33 1 6.4538 3.4885 0.9100 34 1 6.4541 3.4989 -0.8699 35 1 8.9757 9.5475 0.9379 36 1 2.5849 -3.1072 0.4976 37 1 0.8916 -2.5584 0.5012 38 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433870128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:18 Heat of formation + Delta-G solvation = 103.236294 kcal Electronic energy + Delta-G solvation = -24795.433370 eV Core-core repulsion = 20804.098341 eV Total energy + Delta-G solvation = -3991.335029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.60475 -40.80923 -39.38401 -38.28315 -34.98031 -33.44312 -33.16006 -31.77695 -31.24835 -30.96048 -29.88976 -26.60912 -26.35869 -23.89014 -23.28442 -22.81602 -21.63288 -20.02599 -19.90787 -19.34093 -18.20979 -17.11783 -16.86452 -16.71398 -16.69089 -16.12912 -15.90544 -15.35020 -14.98013 -14.43257 -14.27633 -14.21114 -14.00768 -13.78604 -13.21516 -12.99129 -12.49396 -12.35248 -12.14800 -12.08337 -11.71336 -11.43520 -11.25304 -11.12709 -11.11300 -10.85860 -10.55906 -10.51444 -10.35508 -10.27712 -10.06935 -9.73751 -9.57236 -8.66208 -8.07973 -7.98413 -7.51780 -6.27412 -4.35189 0.57098 0.77209 1.42938 1.88054 2.10464 2.13129 2.68626 2.84349 3.20832 3.27212 3.31896 3.35989 3.63250 3.74692 4.21687 4.28569 4.44661 4.63009 4.90823 5.05915 5.06376 5.39653 5.45934 5.67084 5.90721 5.92027 6.08958 6.16579 6.44648 6.47258 6.65242 6.76912 6.90465 7.02496 7.23703 7.34879 7.53354 7.65229 7.86519 8.00598 8.04800 8.59491 8.72639 9.31401 10.79855 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.028867 B = 0.001830 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.721995 B =15298.919555 C =15706.772996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.289 4.289 4 C 0.261 3.739 5 N -0.622 5.622 6 C 0.541 3.459 7 O -0.499 6.499 8 C -0.159 4.159 9 S 0.126 5.874 10 C 0.206 3.794 11 N -0.302 5.302 12 N -0.479 5.479 13 H 0.443 0.557 14 C 0.466 3.534 15 O -0.440 6.440 16 N -0.508 5.508 17 N -0.318 5.318 18 N -0.315 5.315 19 C 0.258 3.742 20 C -0.537 4.537 21 H 0.065 0.935 22 C 0.066 3.934 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.413 0.587 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.417 0.583 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.610 23.252 4.750 27.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C -0.320 4.320 4 C 0.009 3.991 5 N -0.270 5.270 6 C 0.324 3.676 7 O -0.372 6.372 8 C -0.311 4.311 9 S 0.352 5.648 10 C -0.183 4.183 11 N -0.141 5.141 12 N -0.210 5.210 13 H 0.289 0.711 14 C 0.148 3.852 15 O -0.241 6.241 16 N -0.248 5.248 17 N -0.148 5.148 18 N -0.097 5.097 19 C 0.140 3.860 20 C -0.576 4.576 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.196 1.196 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.178 0.822 32 H 0.249 0.751 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.277 0.723 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.213 22.299 4.208 26.259 hybrid contribution 2.424 -0.187 -0.472 2.477 sum 15.637 22.112 3.736 27.339 Atomic orbital electron populations 1.20391 0.87814 1.03962 1.02604 1.21080 0.94994 0.87068 1.00682 1.21255 0.89621 0.99922 1.21174 1.18912 0.86937 0.89582 1.03683 1.42201 1.07980 1.04499 1.72328 1.19343 0.89541 0.81663 0.77092 1.90721 1.25911 1.73347 1.47221 1.23727 1.01393 0.96532 1.09468 1.86652 0.92045 0.94526 1.91607 1.26418 0.99072 0.92146 1.00685 1.78510 0.96910 1.08789 1.29864 1.48254 1.10723 1.03953 1.58072 0.71084 1.21276 0.85731 0.82238 0.95956 1.84878 1.82300 1.21929 1.34968 1.70850 1.14445 1.12663 1.26855 1.77257 1.00094 1.08375 1.29094 1.49022 1.00879 1.07863 1.51972 1.19712 0.96033 0.71250 0.98980 1.21320 1.46887 0.98017 0.91335 0.91711 1.24926 0.94640 0.96043 0.98142 1.69913 1.44821 1.06998 1.31153 0.86356 0.78014 0.78588 0.83742 1.20354 1.20866 1.19625 0.91012 0.89873 0.90511 0.82179 0.75121 0.85529 0.85500 0.72342 0.92968 0.92697 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.50 9.89 36.01 0.36 -1.14 16 2 C 0.09 1.92 6.92 -82.28 -0.57 1.35 16 3 C -0.29 -5.75 9.52 -39.83 -0.38 -6.13 16 4 C 0.26 5.10 8.11 -154.38 -1.25 3.85 16 5 N -0.62 -8.91 5.45 -11.13 -0.06 -8.97 16 6 C 0.54 7.13 7.82 -10.98 -0.09 7.05 16 7 O -0.50 -8.19 13.00 5.55 0.07 -8.12 16 8 C -0.16 -1.46 6.04 36.01 0.22 -1.24 16 9 S 0.13 1.38 21.30 -107.50 -2.29 -0.91 16 10 C 0.21 2.26 8.28 -90.94 -0.75 1.51 16 11 N -0.30 -2.92 12.34 30.14 0.37 -2.54 16 12 N -0.48 -3.19 7.45 29.39 0.22 -2.97 16 13 H 0.44 1.29 8.96 -182.36 -1.63 -0.34 16 14 C 0.47 3.60 9.54 -89.87 -0.86 2.74 16 15 O -0.44 -1.96 13.64 -17.99 -0.25 -2.20 16 16 N -0.51 -5.64 11.25 -14.97 -0.17 -5.81 16 17 N -0.32 -7.13 12.59 31.44 0.40 -6.73 16 18 N -0.31 -7.32 3.59 -58.33 -0.21 -7.53 16 19 C 0.26 6.51 5.81 -5.19 -0.03 6.48 16 20 C -0.54 -14.61 9.39 -34.44 -0.32 -14.93 16 21 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 24 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.16 3.08 5.92 -52.49 -0.31 2.77 16 32 H 0.41 4.57 8.82 -40.82 -0.36 4.21 16 33 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.42 -0.51 9.06 45.56 0.41 -0.10 16 36 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.06 1.37 7.65 -51.93 -0.40 0.97 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -36.19 356.47 -8.95 -45.14 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.35 Total: 2.17 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -3.77 Total: 1.22 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 1.28 Total: -58.59 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.17 Total: -10.33 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.29 Total: -0.91 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.19 -8.95 -45.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433870128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.379 kcal (2) G-P(sol) polarization free energy of solvation -36.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds