Wall clock time and date at job start Tue Mar 31 2020 20:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 S 1.81397 * 109.46883 * 180.02562 * 8 6 5 10 10 C 1.76199 * 103.00089 * 180.02562 * 9 8 6 11 11 N 1.31163 * 125.55637 * 359.69127 * 10 9 8 12 12 N 1.40413 * 106.90397 * 179.86149 * 11 10 9 13 13 H 0.96995 * 126.75972 * 180.13795 * 12 11 10 14 14 C 1.34763 * 106.47978 * 0.40180 * 12 11 10 15 15 O 1.35433 * 125.97014 * 179.78266 * 14 12 11 16 16 N 1.31409 * 108.06105 * 359.75496 * 14 12 11 17 17 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46500 * 125.97897 * 359.96594 * 18 2 1 20 20 C 1.50698 * 109.46965 * 89.99833 * 19 18 2 21 21 H 1.08000 * 120.00464 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99358 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00418 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99496 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47105 * 90.00179 * 24 22 20 26 26 H 1.48499 * 109.46684 * 210.00001 * 24 22 20 27 27 H 1.48496 * 109.47247 * 330.00058 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 32 32 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 33 33 H 1.08995 * 109.46887 * 299.99916 * 8 6 5 34 34 H 1.08992 * 109.46796 * 60.00190 * 8 6 5 35 35 H 0.96703 * 113.99539 * 269.99294 * 15 14 12 36 36 H 1.08994 * 109.46840 * 210.00162 * 19 18 2 37 37 H 1.09004 * 109.46443 * 329.99889 * 19 18 2 38 38 H 0.96998 * 120.00265 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 16 5.3479 5.4382 0.0318 10 6 6.8836 6.3020 0.0363 11 7 8.0715 5.7458 0.0382 12 7 9.0109 6.7894 0.0384 13 1 9.9768 6.7010 0.0377 14 6 8.3062 7.9381 0.0456 15 8 8.8246 9.1893 0.0525 16 7 7.0283 7.6321 0.0443 17 7 3.6337 -0.6577 -0.0036 18 7 2.3016 -1.0910 -0.0059 19 6 1.8500 -2.4847 -0.0128 20 6 1.6945 -2.9553 -1.4359 21 1 1.9108 -2.2836 -2.2535 22 6 1.2760 -4.2434 -1.6941 23 7 1.0121 -5.0611 -0.6985 24 14 1.0838 -4.8270 -3.4582 25 1 2.3645 -5.4139 -3.9277 26 1 0.0141 -5.8548 -3.5257 27 1 0.7200 -3.6763 -4.3235 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 -0.0006 32 1 5.6584 1.0776 0.0055 33 1 6.4538 3.4885 0.9100 34 1 6.4541 3.4989 -0.8699 35 1 8.9757 9.5475 0.9379 36 1 2.5849 -3.1072 0.4976 37 1 0.8916 -2.5584 0.5012 38 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433870128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:17 Heat of formation + Delta-G solvation = 73.116604 kcal Electronic energy + Delta-G solvation = -24796.739457 eV Core-core repulsion = 20804.098341 eV Total energy + Delta-G solvation = -3992.641117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.23898 -42.31561 -40.66177 -38.69069 -36.39657 -35.32576 -33.80043 -33.24287 -32.66862 -31.94521 -30.93669 -28.43476 -27.86435 -25.05830 -24.53527 -23.60397 -22.87906 -21.31903 -20.83724 -20.51423 -18.88296 -18.77291 -18.04315 -17.92971 -17.44399 -17.31005 -17.04186 -16.92473 -16.19441 -15.84062 -15.51821 -15.22788 -14.99501 -14.58539 -14.41063 -14.39100 -14.08214 -13.79464 -13.57477 -13.52242 -13.13443 -12.82496 -12.68594 -12.59479 -12.24586 -12.10893 -11.88458 -11.86656 -11.57107 -11.36676 -11.27500 -11.07844 -11.01440 -10.72905 -9.59104 -9.16051 -8.84197 -8.32109 -6.49491 -0.21844 0.18050 0.77374 0.84943 1.23996 1.32288 1.38619 1.40518 1.40988 1.45336 1.51894 2.16374 2.25678 2.38711 2.93438 2.97841 3.34652 3.61571 3.89463 3.95516 4.16681 4.23538 4.48131 4.50086 4.75883 4.79308 4.79909 4.88203 4.99987 5.00313 5.14627 5.26602 5.54578 5.68038 5.81911 5.92033 6.18793 6.26445 6.44455 6.62756 6.62801 6.87583 7.06154 7.21495 8.73830 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.028867 B = 0.001830 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.721995 B =15298.919555 C =15706.772996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.088 3.912 3 C -0.297 4.297 4 C 0.273 3.727 5 N -0.615 5.615 6 C 0.544 3.456 7 O -0.530 6.530 8 C -0.140 4.140 9 S 0.093 5.907 10 C 0.199 3.801 11 N -0.310 5.310 12 N -0.463 5.463 13 H 0.459 0.541 14 C 0.477 3.523 15 O -0.437 6.437 16 N -0.548 5.548 17 N -0.355 5.355 18 N -0.342 5.342 19 C 0.275 3.725 20 C -0.553 4.553 21 H 0.050 0.950 22 C 0.024 3.976 23 N -0.917 5.917 24 Si 0.970 3.030 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.270 1.270 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.169 0.831 32 H 0.429 0.571 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.442 0.558 36 H 0.025 0.975 37 H 0.052 0.948 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.967 24.676 4.213 29.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C -0.328 4.328 4 C 0.019 3.981 5 N -0.265 5.265 6 C 0.330 3.670 7 O -0.404 6.404 8 C -0.291 4.291 9 S 0.318 5.682 10 C -0.191 4.191 11 N -0.149 5.149 12 N -0.197 5.197 13 H 0.310 0.690 14 C 0.160 3.840 15 O -0.242 6.242 16 N -0.289 5.289 17 N -0.185 5.185 18 N -0.124 5.124 19 C 0.156 3.844 20 C -0.591 4.591 21 H 0.068 0.932 22 C -0.178 4.178 23 N -0.555 5.555 24 Si 0.794 3.206 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.194 1.194 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.187 0.813 32 H 0.268 0.732 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.306 0.694 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.637 23.763 3.701 28.153 hybrid contribution 2.131 -0.420 -0.249 2.186 sum 16.768 23.343 3.451 28.948 Atomic orbital electron populations 1.20509 0.85438 1.04389 1.04124 1.21753 0.96677 0.86464 0.99384 1.21457 0.89905 1.00015 1.21430 1.19235 0.88576 0.89175 1.01114 1.42301 1.07369 1.04551 1.72254 1.19985 0.90415 0.81205 0.75415 1.90703 1.27684 1.73773 1.48285 1.23618 0.99336 0.94285 1.11904 1.86756 0.93332 0.95992 1.92108 1.26208 0.99015 0.92249 1.01596 1.78410 0.96850 1.09812 1.29803 1.48140 1.11309 1.03158 1.57088 0.69044 1.21204 0.85135 0.83280 0.94419 1.84868 1.81744 1.20360 1.37234 1.70764 1.16512 1.13060 1.28606 1.77177 1.00086 1.09940 1.31328 1.48793 1.01735 1.07526 1.54371 1.19253 0.94966 0.72436 0.97754 1.21438 1.47501 0.98367 0.91795 0.93205 1.25712 0.93980 0.95929 1.02142 1.69993 1.45052 1.07420 1.33063 0.85376 0.78240 0.78194 0.78812 1.20022 1.19585 1.19443 0.88866 0.91483 0.87914 0.81326 0.73208 0.82829 0.83166 0.69394 0.95655 0.92991 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.85 9.89 71.24 0.70 -2.15 16 2 C 0.09 3.62 6.92 41.38 0.29 3.91 16 3 C -0.30 -11.76 9.52 22.11 0.21 -11.55 16 4 C 0.27 10.60 8.11 133.33 1.08 11.68 16 5 N -0.61 -16.84 5.45 -307.50 -1.68 -18.52 16 6 C 0.54 13.57 7.82 87.66 0.69 14.26 16 7 O -0.53 -16.96 13.00 -3.05 -0.04 -17.00 16 8 C -0.14 -2.27 6.04 71.24 0.43 -1.84 16 9 S 0.09 1.94 21.30 -56.49 -1.20 0.74 16 10 C 0.20 4.11 8.28 180.46 1.49 5.60 16 11 N -0.31 -5.32 12.34 -58.57 -0.72 -6.05 16 12 N -0.46 -5.09 7.45 -172.63 -1.29 -6.37 16 13 H 0.46 1.44 8.96 -213.12 -1.91 -0.47 16 14 C 0.48 6.42 9.54 180.08 1.72 8.13 16 15 O -0.44 -2.81 13.64 -87.29 -1.19 -4.00 16 16 N -0.55 -11.51 11.25 -314.71 -3.54 -15.05 16 17 N -0.35 -16.19 12.59 -54.44 -0.69 -16.88 16 18 N -0.34 -16.28 3.59 -338.45 -1.22 -17.49 16 19 C 0.27 14.39 5.81 85.63 0.50 14.88 16 20 C -0.55 -30.76 9.39 25.60 0.24 -30.52 16 21 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 22 C 0.02 1.28 5.46 84.66 0.46 1.74 16 23 N -0.92 -51.46 13.29 21.45 0.28 -51.17 16 24 Si 0.97 42.86 29.54 68.60 2.03 44.89 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.07 2.43 7.71 -2.39 -0.02 2.41 16 30 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 31 H 0.17 6.38 5.92 -2.91 -0.02 6.36 16 32 H 0.43 8.79 8.82 -92.71 -0.82 7.97 16 33 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.44 -2.29 9.06 -74.06 -0.67 -2.96 16 36 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 2.70 7.65 -2.39 -0.02 2.68 16 38 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -79.36 356.47 -3.66 -83.02 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -2.22 Total: 9.72 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 7.81 Total: 14.15 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -8.84 Total: -131.53 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -1.23 Total: -21.00 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.20 Total: 0.74 kcal Total: -79.36 -3.66 -83.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433870128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.139 kcal (2) G-P(sol) polarization free energy of solvation -79.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds