Wall clock time and date at job start Tue Mar 31 2020 20:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 120.00241 * 2 1 4 4 H 1.48503 * 109.47201 * 264.64988 * 3 2 1 5 5 H 1.48507 * 109.46913 * 24.64597 * 3 2 1 6 6 H 1.48500 * 109.47342 * 144.64636 * 3 2 1 7 7 C 1.37880 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99531 * 5.03962 * 7 2 1 9 9 C 1.50698 * 120.00198 * 185.03661 * 7 2 1 10 10 H 1.09001 * 109.47502 * 325.31345 * 9 7 2 11 11 N 1.46507 * 109.46918 * 85.31300 * 9 7 2 12 12 C 1.34775 * 119.99877 * 204.99951 * 11 9 7 13 13 O 1.21586 * 119.99976 * 359.72476 * 12 11 9 14 14 N 1.34782 * 119.99843 * 179.97438 * 12 11 9 15 15 C 1.46495 * 119.99919 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47102 * 180.02562 * 15 14 12 17 17 H 1.09007 * 110.85761 * 308.79962 * 16 15 14 18 18 C 1.54741 * 110.97571 * 184.99715 * 16 15 14 19 19 C 1.51684 * 102.54617 * 266.09662 * 18 16 15 20 20 C 1.47594 * 125.85908 * 164.57910 * 19 18 16 21 21 N 1.34784 * 119.99920 * 179.97438 * 20 19 18 22 22 O 1.21555 * 120.00156 * 0.02562 * 20 19 18 23 23 N 1.29013 * 108.27562 * 344.61009 * 19 18 16 24 24 O 1.41382 * 112.89070 * 359.68207 * 23 19 18 25 25 C 1.52997 * 109.47356 * 205.30849 * 9 7 2 26 26 F 1.39898 * 109.47419 * 304.14610 * 25 9 7 27 27 F 1.39902 * 109.46782 * 64.14089 * 25 9 7 28 28 F 1.39897 * 109.47367 * 184.13990 * 25 9 7 29 29 H 0.97000 * 120.00231 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99910 * 24.99516 * 11 9 7 31 31 H 0.96999 * 119.99944 * 359.97438 * 14 12 11 32 32 H 1.08999 * 109.47155 * 299.99573 * 15 14 12 33 33 H 1.09003 * 109.47548 * 59.99830 * 15 14 12 34 34 H 1.09002 * 110.79086 * 24.36162 * 18 16 15 35 35 H 1.09008 * 110.79290 * 147.82845 * 18 16 15 36 36 H 0.97006 * 119.99610 * 0.02562 * 21 20 19 37 37 H 0.96993 * 119.99851 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6097 1.9811 -1.3940 5 1 1.3946 2.6827 0.5839 6 1 3.4856 1.4755 0.8101 7 6 2.0045 -1.1940 -0.0005 8 1 1.4676 -2.1275 -0.0831 9 6 3.5071 -1.1966 0.1140 10 1 3.9125 -0.3271 -0.4034 11 7 3.8892 -1.1457 1.5275 12 6 5.0883 -0.6443 1.8838 13 8 5.8551 -0.2388 1.0318 14 7 5.4396 -0.5970 3.1842 15 6 6.7428 -0.0514 3.5715 16 6 6.8900 -0.1138 5.0931 17 1 6.0258 0.3326 5.5852 18 6 8.2016 0.5676 5.5512 19 6 9.1704 -0.5973 5.6230 20 6 10.6410 -0.4954 5.6977 21 7 11.3917 -1.6132 5.7577 22 8 11.1750 0.5965 5.7059 23 7 8.4885 -1.6923 5.6068 24 8 7.0939 -1.4706 5.5369 25 6 4.0648 -2.4728 -0.5193 26 9 3.4730 -3.5888 0.0819 27 9 3.7811 -2.4759 -1.8892 28 9 5.4500 -2.5207 -0.3297 29 1 -0.4850 0.8400 -0.0004 30 1 3.2790 -1.4729 2.2069 31 1 4.8291 -0.9235 3.8636 32 1 7.5350 -0.6377 3.1060 33 1 6.8157 0.9848 3.2412 34 1 8.5330 1.3019 4.8169 35 1 8.0766 1.0281 6.5313 36 1 10.9655 -2.4846 5.7515 37 1 12.3581 -1.5463 5.8072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434754976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:59 Heat of formation + Delta-G solvation = -199.452857 kcal Electronic energy + Delta-G solvation = -29776.826945 eV Core-core repulsion = 24755.463967 eV Total energy + Delta-G solvation = -5021.362978 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.03728 -46.54297 -46.53460 -41.11284 -39.64529 -39.18193 -35.34638 -34.60660 -34.21182 -33.18310 -32.58113 -31.41716 -29.05219 -26.35103 -24.96625 -24.86865 -22.36787 -21.49189 -20.40620 -20.27461 -18.62749 -18.25226 -17.75876 -17.45000 -17.21421 -17.13425 -16.70395 -16.43054 -16.14489 -15.66304 -15.28147 -14.97130 -14.59656 -14.56073 -14.10362 -13.72774 -13.49934 -13.41691 -13.35613 -13.03859 -12.95967 -12.76694 -12.72546 -12.63091 -12.55996 -12.41271 -12.14688 -11.74481 -11.46182 -11.14758 -10.98600 -10.67075 -10.36035 -10.19582 -10.06900 -9.83259 -9.70802 -8.99588 -8.91791 -8.29998 -6.54583 -4.69492 0.46249 2.20387 2.50471 2.83342 2.96961 3.15468 3.20334 3.30916 3.62875 3.74601 3.97680 4.01101 4.03831 4.10598 4.21660 4.58183 4.71441 4.88620 4.94854 5.04390 5.19334 5.21349 5.23212 5.43599 5.52958 5.65009 6.07605 6.29373 6.42882 6.65530 6.74871 6.87092 7.18997 7.40932 7.50956 7.90139 8.51941 8.61875 9.01308 9.14517 10.53488 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.003039 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.705898 B = 9212.745227 C =10015.605828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.099 3.901 3 Si 0.872 3.128 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.537 4.537 8 H 0.094 0.906 9 C 0.223 3.777 10 H 0.087 0.913 11 N -0.727 5.727 12 C 0.695 3.305 13 O -0.594 6.594 14 N -0.750 5.750 15 C 0.128 3.872 16 C 0.030 3.970 17 H 0.133 0.867 18 C -0.124 4.124 19 C 0.042 3.958 20 C 0.599 3.401 21 N -0.832 5.832 22 O -0.517 6.517 23 N -0.238 5.238 24 O -0.169 6.169 25 C 0.439 3.561 26 F -0.190 7.190 27 F -0.186 7.186 28 F -0.194 7.194 29 H 0.275 0.725 30 H 0.397 0.603 31 H 0.397 0.603 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.412 0.588 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.446 -0.750 13.642 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.111 4.111 3 Si 0.697 3.303 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.575 4.575 8 H 0.112 0.888 9 C 0.119 3.881 10 H 0.105 0.895 11 N -0.383 5.383 12 C 0.396 3.604 13 O -0.472 6.472 14 N -0.408 5.408 15 C 0.003 3.997 16 C -0.029 4.029 17 H 0.150 0.850 18 C -0.164 4.164 19 C -0.154 4.154 20 C 0.380 3.620 21 N -0.397 5.397 22 O -0.389 6.389 23 N 0.019 4.981 24 O -0.191 6.191 25 C 0.383 3.617 26 F -0.172 7.172 27 F -0.167 7.167 28 F -0.176 7.176 29 H 0.085 0.915 30 H 0.232 0.768 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.242 0.758 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 16.054 -0.709 12.873 20.590 hybrid contribution -0.126 0.761 0.473 0.904 sum 15.928 0.052 13.346 20.780 Atomic orbital electron populations 1.69865 1.06467 1.28404 1.44474 1.24982 0.94775 0.99369 0.91929 0.86886 0.80809 0.82535 0.80116 1.19244 1.20802 1.17605 1.20802 0.86448 0.96467 1.53734 0.88753 1.19868 0.97607 0.90243 0.80383 0.89550 1.46836 1.16049 1.65511 1.09855 1.16373 0.82933 0.78978 0.82161 1.90875 1.52352 1.54635 1.49340 1.45023 1.19077 1.69621 1.07055 1.21472 0.86497 1.00405 0.91374 1.24185 0.99549 0.83145 0.96049 0.84956 1.22823 0.89510 0.98230 1.05866 1.25869 0.95954 0.94353 0.99178 1.16843 0.83657 0.84841 0.76629 1.43677 1.11318 1.08943 1.75808 1.90916 1.72326 1.26805 1.48897 1.78325 0.90984 1.22384 1.06434 1.91340 1.12725 1.29910 1.85173 1.21629 0.74914 0.88317 0.76811 1.93075 1.83967 1.56624 1.83526 1.93098 1.93436 1.96900 1.33276 1.93141 1.32473 1.96992 1.94967 0.91471 0.76778 0.76919 0.91319 0.89955 0.86408 0.86603 0.75810 0.75454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.37 13.96 55.43 0.77 -22.60 16 2 C 0.10 2.57 5.47 -17.82 -0.10 2.47 16 3 Si 0.87 19.99 26.92 -169.99 -4.58 15.41 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.25 -5.84 6.83 56.52 0.39 -5.45 16 7 C -0.54 -13.64 8.68 -34.44 -0.30 -13.94 16 8 H 0.09 2.60 7.69 -52.49 -0.40 2.20 16 9 C 0.22 5.16 1.45 -69.08 -0.10 5.06 16 10 H 0.09 2.13 5.34 -51.93 -0.28 1.86 16 11 N -0.73 -14.72 4.94 -59.81 -0.30 -15.02 16 12 C 0.70 13.75 7.86 -86.92 -0.68 13.07 16 13 O -0.59 -13.84 14.93 5.29 0.08 -13.76 16 14 N -0.75 -11.02 5.56 -65.23 -0.36 -11.38 16 15 C 0.13 1.58 5.37 -4.04 -0.02 1.56 16 16 C 0.03 0.26 3.84 -25.82 -0.10 0.16 16 17 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.12 -0.93 6.45 -26.48 -0.17 -1.10 16 19 C 0.04 0.37 7.29 -79.48 -0.58 -0.21 16 20 C 0.60 5.24 8.09 -12.44 -0.10 5.14 16 21 N -0.83 -4.42 8.87 30.47 0.27 -4.15 16 22 O -0.52 -6.06 17.79 5.32 0.09 -5.97 16 23 N -0.24 -2.44 12.15 35.28 0.43 -2.01 16 24 O -0.17 -1.88 12.23 -11.36 -0.14 -2.02 16 25 C 0.44 9.95 2.83 37.16 0.11 10.05 16 26 F -0.19 -4.19 16.65 2.25 0.04 -4.15 16 27 F -0.19 -4.23 17.12 2.25 0.04 -4.20 16 28 F -0.19 -4.41 15.55 2.25 0.04 -4.37 16 29 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.40 7.17 8.61 -40.82 -0.35 6.81 16 31 H 0.40 4.76 8.49 -40.82 -0.35 4.42 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 34 H 0.12 0.83 7.90 -51.93 -0.41 0.42 16 35 H 0.12 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.41 1.68 8.51 -40.82 -0.35 1.34 16 37 H 0.41 1.40 8.93 -40.82 -0.36 1.04 16 LS Contribution 341.35 15.07 5.14 5.14 Total: -1.00 -33.61 341.35 -3.86 -37.46 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -3.34 Total: 9.34 kcal Atomic # 6 Polarization: 24.32 SS G_CDS: -2.05 Total: 22.27 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.81 Total: -55.15 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.03 Total: -21.75 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 0.11 Total: -12.72 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.58 Total: 15.41 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.61 -3.86 -37.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434754976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.988 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds