Wall clock time and date at job start Tue Mar 31 2020 20:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 120.00241 * 2 1 4 4 H 1.48503 * 109.47201 * 264.64988 * 3 2 1 5 5 H 1.48507 * 109.46913 * 24.64597 * 3 2 1 6 6 H 1.48500 * 109.47342 * 144.64636 * 3 2 1 7 7 C 1.37880 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99531 * 5.03962 * 7 2 1 9 9 C 1.50698 * 120.00198 * 185.03661 * 7 2 1 10 10 H 1.09001 * 109.47502 * 325.31345 * 9 7 2 11 11 N 1.46507 * 109.46918 * 85.31300 * 9 7 2 12 12 C 1.34775 * 119.99877 * 204.99951 * 11 9 7 13 13 O 1.21586 * 119.99976 * 359.72476 * 12 11 9 14 14 N 1.34782 * 119.99843 * 179.97438 * 12 11 9 15 15 C 1.46495 * 119.99919 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47102 * 180.02562 * 15 14 12 17 17 H 1.09007 * 110.85761 * 308.79962 * 16 15 14 18 18 C 1.54741 * 110.97571 * 184.99715 * 16 15 14 19 19 C 1.51684 * 102.54617 * 266.09662 * 18 16 15 20 20 C 1.47594 * 125.85908 * 164.57910 * 19 18 16 21 21 N 1.34784 * 119.99920 * 179.97438 * 20 19 18 22 22 O 1.21555 * 120.00156 * 0.02562 * 20 19 18 23 23 N 1.29013 * 108.27562 * 344.61009 * 19 18 16 24 24 O 1.41382 * 112.89070 * 359.68207 * 23 19 18 25 25 C 1.52997 * 109.47356 * 205.30849 * 9 7 2 26 26 F 1.39898 * 109.47419 * 304.14610 * 25 9 7 27 27 F 1.39902 * 109.46782 * 64.14089 * 25 9 7 28 28 F 1.39897 * 109.47367 * 184.13990 * 25 9 7 29 29 H 0.97000 * 120.00231 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99910 * 24.99516 * 11 9 7 31 31 H 0.96999 * 119.99944 * 359.97438 * 14 12 11 32 32 H 1.08999 * 109.47155 * 299.99573 * 15 14 12 33 33 H 1.09003 * 109.47548 * 59.99830 * 15 14 12 34 34 H 1.09002 * 110.79086 * 24.36162 * 18 16 15 35 35 H 1.09008 * 110.79290 * 147.82845 * 18 16 15 36 36 H 0.97006 * 119.99610 * 0.02562 * 21 20 19 37 37 H 0.96993 * 119.99851 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6097 1.9811 -1.3940 5 1 1.3946 2.6827 0.5839 6 1 3.4856 1.4755 0.8101 7 6 2.0045 -1.1940 -0.0005 8 1 1.4676 -2.1275 -0.0831 9 6 3.5071 -1.1966 0.1140 10 1 3.9125 -0.3271 -0.4034 11 7 3.8892 -1.1457 1.5275 12 6 5.0883 -0.6443 1.8838 13 8 5.8551 -0.2388 1.0318 14 7 5.4396 -0.5970 3.1842 15 6 6.7428 -0.0514 3.5715 16 6 6.8900 -0.1138 5.0931 17 1 6.0258 0.3326 5.5852 18 6 8.2016 0.5676 5.5512 19 6 9.1704 -0.5973 5.6230 20 6 10.6410 -0.4954 5.6977 21 7 11.3917 -1.6132 5.7577 22 8 11.1750 0.5965 5.7059 23 7 8.4885 -1.6923 5.6068 24 8 7.0939 -1.4706 5.5369 25 6 4.0648 -2.4728 -0.5193 26 9 3.4730 -3.5888 0.0819 27 9 3.7811 -2.4759 -1.8892 28 9 5.4500 -2.5207 -0.3297 29 1 -0.4850 0.8400 -0.0004 30 1 3.2790 -1.4729 2.2069 31 1 4.8291 -0.9235 3.8636 32 1 7.5350 -0.6377 3.1060 33 1 6.8157 0.9848 3.2412 34 1 8.5330 1.3019 4.8169 35 1 8.0766 1.0281 6.5313 36 1 10.9655 -2.4846 5.7515 37 1 12.3581 -1.5463 5.8072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434754976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:59 Heat of formation + Delta-G solvation = -229.184130 kcal Electronic energy + Delta-G solvation = -29778.116189 eV Core-core repulsion = 24755.463967 eV Total energy + Delta-G solvation = -5022.652223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.87679 -48.38594 -48.36600 -41.86305 -40.90407 -40.16762 -36.87812 -35.89304 -35.10648 -34.47044 -33.87172 -32.43576 -30.65886 -27.38401 -26.89069 -25.57376 -23.42396 -22.97795 -21.92088 -21.02569 -20.33900 -19.44136 -19.15265 -18.82900 -18.69324 -18.34402 -17.96555 -17.84632 -17.21633 -16.71084 -16.34167 -16.20770 -15.86925 -15.68328 -15.44355 -15.25443 -15.13107 -14.89855 -14.80922 -14.65090 -14.56927 -14.53852 -14.48822 -14.03052 -13.84467 -13.52151 -13.11406 -12.99979 -12.91823 -12.54234 -12.16200 -12.00703 -11.82735 -11.71348 -11.41660 -10.98325 -10.95697 -10.77567 -10.39756 -9.85073 -8.53899 -6.72941 -0.22712 1.26411 1.35413 1.45024 1.48413 1.68137 1.83486 1.94326 2.19206 2.24067 2.28942 2.81034 3.04014 3.12502 3.30943 3.36223 3.41534 3.45665 3.48148 3.76007 4.00214 4.22080 4.38978 4.46516 4.51236 4.69773 4.73228 4.94793 5.40498 5.50318 5.57124 5.81219 5.83481 6.10015 6.15222 6.45101 6.96470 7.00584 7.14248 7.59829 8.58159 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.003039 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.705898 B = 9212.745227 C =10015.605828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.065 3.935 3 Si 0.927 3.073 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.232 3.768 10 H 0.075 0.925 11 N -0.726 5.726 12 C 0.692 3.308 13 O -0.629 6.629 14 N -0.732 5.732 15 C 0.125 3.875 16 C 0.038 3.962 17 H 0.163 0.837 18 C -0.122 4.122 19 C 0.047 3.953 20 C 0.598 3.402 21 N -0.813 5.813 22 O -0.550 6.550 23 N -0.255 5.255 24 O -0.189 6.189 25 C 0.440 3.560 26 F -0.187 7.187 27 F -0.188 7.188 28 F -0.193 7.193 29 H 0.280 0.720 30 H 0.409 0.591 31 H 0.412 0.588 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.420 0.580 37 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.547 -0.015 15.273 22.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.751 3.249 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.127 3.873 10 H 0.093 0.907 11 N -0.381 5.381 12 C 0.393 3.607 13 O -0.510 6.510 14 N -0.389 5.389 15 C 0.000 4.000 16 C -0.020 4.020 17 H 0.180 0.820 18 C -0.162 4.162 19 C -0.149 4.149 20 C 0.379 3.621 21 N -0.378 5.378 22 O -0.426 6.426 23 N 0.000 5.000 24 O -0.210 6.210 25 C 0.384 3.616 26 F -0.168 7.168 27 F -0.169 7.169 28 F -0.174 7.174 29 H 0.090 0.910 30 H 0.246 0.754 31 H 0.249 0.751 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.251 0.749 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 17.154 -0.026 14.568 22.505 hybrid contribution -0.369 0.425 -0.011 0.563 sum 16.785 0.399 14.557 22.221 Atomic orbital electron populations 1.69931 1.07707 1.29437 1.46101 1.25528 0.95221 1.01876 0.91596 0.86028 0.79582 0.79556 0.79765 1.19587 1.19660 1.17813 1.20706 0.87431 0.95439 1.54090 0.91595 1.19535 0.96098 0.90038 0.81660 0.90732 1.46310 1.16888 1.65985 1.08945 1.16430 0.82197 0.78643 0.83462 1.90853 1.53207 1.56111 1.50872 1.44859 1.20142 1.68442 1.05492 1.21654 0.84330 0.99983 0.94018 1.24236 1.01494 0.82797 0.93494 0.81978 1.22926 0.88114 0.97731 1.07436 1.26089 0.96239 0.94797 0.97734 1.16889 0.83687 0.85002 0.76516 1.43601 1.11895 1.08529 1.73809 1.90906 1.72751 1.28030 1.50897 1.78338 0.90776 1.22935 1.07923 1.91323 1.13319 1.31041 1.85307 1.21569 0.74952 0.88345 0.76725 1.93080 1.83919 1.56375 1.83444 1.93092 1.93456 1.96916 1.33454 1.93144 1.32335 1.96989 1.94955 0.90982 0.75432 0.75108 0.93380 0.89472 0.85829 0.83908 0.74870 0.74194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.93 13.96 21.45 0.30 -48.63 16 2 C 0.06 3.32 5.47 84.66 0.46 3.78 16 3 Si 0.93 40.83 26.92 68.60 1.85 42.68 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 6 H -0.25 -11.20 6.83 99.48 0.68 -10.52 16 7 C -0.54 -27.49 8.68 25.60 0.22 -27.26 16 8 H 0.07 3.70 7.69 -2.91 -0.02 3.68 16 9 C 0.23 10.66 1.45 44.24 0.06 10.72 16 10 H 0.07 3.64 5.34 -2.39 -0.01 3.63 16 11 N -0.73 -28.57 4.94 -461.40 -2.28 -30.85 16 12 C 0.69 26.43 7.86 179.05 1.41 27.83 16 13 O -0.63 -28.74 14.93 -3.99 -0.06 -28.80 16 14 N -0.73 -20.01 5.56 -478.54 -2.66 -22.67 16 15 C 0.12 2.84 5.37 86.38 0.46 3.31 16 16 C 0.04 0.57 3.84 31.19 0.12 0.69 16 17 H 0.16 1.48 8.14 -2.38 -0.02 1.46 16 18 C -0.12 -1.50 6.45 30.76 0.20 -1.30 16 19 C 0.05 0.75 7.29 45.76 0.33 1.08 16 20 C 0.60 9.55 8.09 86.71 0.70 10.25 16 21 N -0.81 -7.29 8.87 -175.79 -1.56 -8.85 16 22 O -0.55 -12.23 17.79 -3.89 -0.07 -12.30 16 23 N -0.26 -4.82 12.15 -42.30 -0.51 -5.33 16 24 O -0.19 -3.81 12.23 -38.30 -0.47 -4.28 16 25 C 0.44 19.76 2.83 71.98 0.20 19.96 16 26 F -0.19 -8.14 16.65 44.97 0.75 -7.39 16 27 F -0.19 -8.52 17.12 44.97 0.77 -7.75 16 28 F -0.19 -8.61 15.55 44.97 0.70 -7.91 16 29 H 0.28 14.19 8.31 -92.71 -0.77 13.41 16 30 H 0.41 14.23 8.61 -92.71 -0.80 13.43 16 31 H 0.41 8.83 8.49 -92.71 -0.79 8.04 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.94 8.12 -2.39 -0.02 1.92 16 34 H 0.12 1.43 7.90 -2.39 -0.02 1.41 16 35 H 0.14 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.42 2.72 8.51 -92.70 -0.79 1.93 16 37 H 0.42 2.16 8.93 -92.71 -0.83 1.33 16 Total: -1.00 -71.88 341.35 -1.08 -72.96 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -2.01 Total: 20.05 kcal Atomic # 6 Polarization: 44.89 SS G_CDS: 4.18 Total: 49.07 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -6.71 Total: -116.33 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.60 Total: -45.38 kcal Atomic # 9 Polarization: -25.27 SS G_CDS: 2.22 Total: -23.05 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.85 Total: 42.68 kcal Total: -71.88 -1.08 -72.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434754976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.224 kcal (2) G-P(sol) polarization free energy of solvation -71.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds