Wall clock time and date at job start Tue Mar 31 2020 20:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86791 * 120.00188 * 2 1 4 4 H 1.48506 * 109.47120 * 269.99603 * 3 2 1 5 5 H 1.48501 * 109.47170 * 29.99242 * 3 2 1 6 6 H 1.48500 * 109.47283 * 149.99918 * 3 2 1 7 7 C 1.37883 * 119.99544 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99363 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00095 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47295 * 60.00312 * 9 7 2 11 11 N 1.46503 * 109.46693 * 180.02562 * 9 7 2 12 12 C 1.34783 * 119.99449 * 204.99984 * 11 9 7 13 13 O 1.21590 * 119.99935 * 359.97438 * 12 11 9 14 14 N 1.34779 * 119.99768 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 12 17 17 H 1.08999 * 110.86512 * 56.19164 * 16 15 14 18 18 C 1.54745 * 110.97273 * 179.97438 * 16 15 14 19 19 C 1.51686 * 102.54693 * 142.31905 * 18 16 15 20 20 C 1.47591 * 125.86421 * 164.57749 * 19 18 16 21 21 N 1.34779 * 120.00626 * 179.97438 * 20 19 18 22 22 O 1.21560 * 119.99497 * 359.97438 * 20 19 18 23 23 N 1.29013 * 108.27803 * 344.61319 * 19 18 16 24 24 O 1.41392 * 112.89106 * 359.68038 * 23 19 18 25 25 C 1.52996 * 109.47050 * 299.99901 * 9 7 2 26 26 F 1.39907 * 109.47394 * 299.99946 * 25 9 7 27 27 F 1.39904 * 109.47511 * 60.00343 * 25 9 7 28 28 F 1.39908 * 109.47025 * 180.02562 * 25 9 7 29 29 H 0.96996 * 119.99647 * 0.02562 * 1 2 3 30 30 H 0.96992 * 120.00655 * 24.99710 * 11 9 7 31 31 H 0.97000 * 119.99708 * 359.97438 * 14 12 11 32 32 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 33 33 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 34 34 H 1.08992 * 110.79270 * 260.58252 * 18 16 15 35 35 H 1.09002 * 110.79197 * 23.86465 * 18 16 15 36 36 H 0.96998 * 119.99510 * 0.02562 * 21 20 19 37 37 H 0.96998 * 120.00265 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 2.2030 -3.6127 0.0018 12 6 1.8371 -4.8126 -0.4913 13 8 0.7168 -4.9709 -0.9367 14 7 2.7131 -5.8369 -0.4907 15 6 2.3156 -7.1409 -1.0271 16 6 3.4856 -8.1196 -0.9075 17 1 3.8260 -8.1933 0.1253 18 6 3.1025 -9.5115 -1.4648 19 6 4.3831 -9.9585 -2.1437 20 6 4.7007 -11.3353 -2.5700 21 7 5.8799 -11.6013 -3.1661 22 8 3.8987 -12.2295 -2.3835 23 7 5.1475 -8.9286 -2.2839 24 8 4.5671 -7.7406 -1.7830 25 6 0.3709 -2.5799 1.2494 26 9 1.1748 -2.5056 2.3921 27 9 -0.5383 -1.5165 1.2489 28 9 -0.3283 -3.7917 1.2497 29 1 -0.4849 0.8400 -0.0004 30 1 3.0965 -3.4865 0.3573 31 1 3.6069 -5.7104 -0.1357 32 1 2.0373 -7.0330 -2.0755 33 1 1.4645 -7.5219 -0.4626 34 1 2.8354 -10.1918 -0.6562 35 1 2.2879 -9.4294 -2.1843 36 1 6.5200 -10.8878 -3.3146 37 1 6.0888 -12.5062 -3.4459 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434754987.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:07 Heat of formation + Delta-G solvation = -175.527475 kcal Electronic energy + Delta-G solvation = -29395.268763 eV Core-core repulsion = 24374.943267 eV Total energy + Delta-G solvation = -5020.325495 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.31302 -45.96551 -45.58232 -41.07220 -39.66213 -39.17806 -35.34864 -34.59863 -34.22981 -33.18675 -32.60639 -31.39792 -28.42926 -26.20140 -24.94088 -24.52156 -22.34163 -21.59867 -20.45379 -20.19623 -18.50752 -18.24404 -17.72294 -17.08002 -16.80692 -16.58603 -16.53873 -16.34351 -15.82005 -15.55804 -15.14083 -14.90924 -14.68615 -14.55755 -14.03087 -13.65790 -13.51875 -13.21935 -12.89488 -12.79418 -12.54529 -12.37094 -12.29031 -12.25153 -12.05538 -11.94571 -11.78787 -11.47004 -11.16727 -11.03134 -10.83560 -10.79479 -10.41831 -10.39342 -10.08581 -9.66466 -9.59866 -8.90153 -8.70449 -8.18072 -6.22700 -4.46370 0.40860 2.15630 2.44281 2.74440 3.03789 3.19401 3.26041 3.29265 3.70420 3.78840 3.94977 4.02201 4.20595 4.33075 4.57197 4.61502 4.82310 4.87459 4.94640 5.08610 5.19175 5.52454 5.65774 5.86493 5.90727 6.02179 6.23983 6.38546 6.63666 6.70052 6.83184 7.19576 7.35965 7.45468 7.62643 7.67131 8.50101 8.63036 9.13106 9.24194 10.68945 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.024292 B = 0.002345 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.386480 B =11937.043762 C =12670.667241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.262 3.738 10 H 0.085 0.915 11 N -0.725 5.725 12 C 0.701 3.299 13 O -0.584 6.584 14 N -0.752 5.752 15 C 0.150 3.850 16 C 0.031 3.969 17 H 0.103 0.897 18 C -0.126 4.126 19 C 0.044 3.956 20 C 0.599 3.401 21 N -0.833 5.833 22 O -0.516 6.516 23 N -0.241 5.241 24 O -0.170 6.170 25 C 0.416 3.584 26 F -0.210 7.210 27 F -0.137 7.137 28 F -0.217 7.217 29 H 0.268 0.732 30 H 0.395 0.605 31 H 0.397 0.603 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.412 0.588 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.225 -18.222 -2.764 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.145 4.145 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.103 0.897 11 N -0.377 5.377 12 C 0.400 3.600 13 O -0.461 6.461 14 N -0.410 5.410 15 C 0.024 3.976 16 C -0.028 4.028 17 H 0.121 0.879 18 C -0.166 4.166 19 C -0.151 4.151 20 C 0.380 3.620 21 N -0.398 5.398 22 O -0.388 6.388 23 N 0.017 4.983 24 O -0.193 6.193 25 C 0.359 3.641 26 F -0.192 7.192 27 F -0.118 7.118 28 F -0.199 7.199 29 H 0.079 0.921 30 H 0.229 0.771 31 H 0.230 0.770 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.242 0.758 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 10.303 -18.129 -3.371 21.123 hybrid contribution 0.738 0.718 0.846 1.333 sum 11.041 -17.411 -2.525 20.771 Atomic orbital electron populations 1.70408 1.05840 1.27351 1.43681 1.25086 0.95164 1.00106 0.94095 0.86203 0.79565 0.81646 0.78350 1.20203 1.20816 1.19544 1.20879 0.93803 0.88086 1.56090 0.90468 1.19607 0.88234 0.84926 0.91614 0.89703 1.45254 1.17472 1.09595 1.65407 1.16010 0.84239 0.80491 0.79229 1.90926 1.19635 1.82882 1.52636 1.44927 1.16579 1.10351 1.69121 1.21146 0.93954 0.81517 1.00978 1.24151 0.88844 0.93704 0.96101 0.87912 1.22804 0.96452 0.95215 1.02169 1.25843 0.95440 0.94522 0.99336 1.16855 0.82343 0.85076 0.77759 1.43678 1.18701 1.15408 1.62007 1.90923 1.47991 1.45274 1.54648 1.78318 1.18548 0.93140 1.08337 1.91361 1.47218 1.19535 1.61172 1.23188 0.80922 0.72792 0.87165 1.92984 1.74475 1.96194 1.55575 1.93403 1.68419 1.53813 1.96200 1.93070 1.81489 1.48361 1.96970 0.92123 0.77146 0.76974 0.90446 0.89390 0.86490 0.86526 0.75833 0.75449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.02 9.50 55.43 0.53 -22.49 16 2 C 0.06 1.67 5.20 -17.81 -0.09 1.58 16 3 Si 0.92 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.55 -14.03 8.46 -34.44 -0.29 -14.32 16 8 H 0.08 1.85 7.74 -52.49 -0.41 1.45 16 9 C 0.26 6.53 2.21 -69.08 -0.15 6.37 16 10 H 0.09 2.38 7.58 -51.93 -0.39 1.98 16 11 N -0.72 -14.75 4.99 -59.81 -0.30 -15.05 16 12 C 0.70 13.76 8.10 -86.91 -0.70 13.05 16 13 O -0.58 -13.79 14.91 5.29 0.08 -13.71 16 14 N -0.75 -10.59 5.56 -65.22 -0.36 -10.95 16 15 C 0.15 1.73 5.36 -4.04 -0.02 1.71 16 16 C 0.03 0.27 3.84 -25.81 -0.10 0.17 16 17 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 18 C -0.13 -0.93 6.45 -26.48 -0.17 -1.10 16 19 C 0.04 0.36 7.28 -79.48 -0.58 -0.22 16 20 C 0.60 4.67 8.09 -12.44 -0.10 4.57 16 21 N -0.83 -3.54 8.87 30.47 0.27 -3.27 16 22 O -0.52 -5.64 17.79 5.31 0.09 -5.54 16 23 N -0.24 -2.28 12.15 35.28 0.43 -1.85 16 24 O -0.17 -1.86 12.23 -11.37 -0.14 -2.00 16 25 C 0.42 10.68 2.81 37.16 0.10 10.79 16 26 F -0.21 -5.18 16.94 2.25 0.04 -5.14 16 27 F -0.14 -3.81 12.91 2.25 0.03 -3.78 16 28 F -0.22 -5.54 15.67 2.25 0.04 -5.51 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.40 6.88 8.55 -40.82 -0.35 6.53 16 31 H 0.40 4.58 8.49 -40.82 -0.35 4.23 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.12 0.81 7.91 -51.93 -0.41 0.39 16 36 H 0.41 1.21 8.51 -40.82 -0.35 0.86 16 37 H 0.41 0.98 8.93 -40.82 -0.36 0.62 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -34.16 338.78 -4.76 -38.93 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -3.44 Total: 7.61 kcal Atomic # 6 Polarization: 24.70 SS G_CDS: -2.11 Total: 22.59 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.56 Total: -53.61 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.03 Total: -21.25 kcal Atomic # 9 Polarization: -14.53 SS G_CDS: 0.10 Total: -14.43 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.16 -4.76 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434754987.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.601 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds