Wall clock time and date at job start Tue Mar 31 2020 20:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86791 * 120.00188 * 2 1 4 4 H 1.48506 * 109.47120 * 269.99603 * 3 2 1 5 5 H 1.48501 * 109.47170 * 29.99242 * 3 2 1 6 6 H 1.48500 * 109.47283 * 149.99918 * 3 2 1 7 7 C 1.37883 * 119.99544 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99363 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00095 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47295 * 60.00312 * 9 7 2 11 11 N 1.46503 * 109.46693 * 180.02562 * 9 7 2 12 12 C 1.34783 * 119.99449 * 204.99984 * 11 9 7 13 13 O 1.21590 * 119.99935 * 359.97438 * 12 11 9 14 14 N 1.34779 * 119.99768 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 12 17 17 H 1.08999 * 110.86512 * 56.19164 * 16 15 14 18 18 C 1.54745 * 110.97273 * 179.97438 * 16 15 14 19 19 C 1.51686 * 102.54693 * 142.31905 * 18 16 15 20 20 C 1.47591 * 125.86421 * 164.57749 * 19 18 16 21 21 N 1.34779 * 120.00626 * 179.97438 * 20 19 18 22 22 O 1.21560 * 119.99497 * 359.97438 * 20 19 18 23 23 N 1.29013 * 108.27803 * 344.61319 * 19 18 16 24 24 O 1.41392 * 112.89106 * 359.68038 * 23 19 18 25 25 C 1.52996 * 109.47050 * 299.99901 * 9 7 2 26 26 F 1.39907 * 109.47394 * 299.99946 * 25 9 7 27 27 F 1.39904 * 109.47511 * 60.00343 * 25 9 7 28 28 F 1.39908 * 109.47025 * 180.02562 * 25 9 7 29 29 H 0.96996 * 119.99647 * 0.02562 * 1 2 3 30 30 H 0.96992 * 120.00655 * 24.99710 * 11 9 7 31 31 H 0.97000 * 119.99708 * 359.97438 * 14 12 11 32 32 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 33 33 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 34 34 H 1.08992 * 110.79270 * 260.58252 * 18 16 15 35 35 H 1.09002 * 110.79197 * 23.86465 * 18 16 15 36 36 H 0.96998 * 119.99510 * 0.02562 * 21 20 19 37 37 H 0.96998 * 120.00265 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 2.2030 -3.6127 0.0018 12 6 1.8371 -4.8126 -0.4913 13 8 0.7168 -4.9709 -0.9367 14 7 2.7131 -5.8369 -0.4907 15 6 2.3156 -7.1409 -1.0271 16 6 3.4856 -8.1196 -0.9075 17 1 3.8260 -8.1933 0.1253 18 6 3.1025 -9.5115 -1.4648 19 6 4.3831 -9.9585 -2.1437 20 6 4.7007 -11.3353 -2.5700 21 7 5.8799 -11.6013 -3.1661 22 8 3.8987 -12.2295 -2.3835 23 7 5.1475 -8.9286 -2.2839 24 8 4.5671 -7.7406 -1.7830 25 6 0.3709 -2.5799 1.2494 26 9 1.1748 -2.5056 2.3921 27 9 -0.5383 -1.5165 1.2489 28 9 -0.3283 -3.7917 1.2497 29 1 -0.4849 0.8400 -0.0004 30 1 3.0965 -3.4865 0.3573 31 1 3.6069 -5.7104 -0.1357 32 1 2.0373 -7.0330 -2.0755 33 1 1.4645 -7.5219 -0.4626 34 1 2.8354 -10.1918 -0.6562 35 1 2.2879 -9.4294 -2.1843 36 1 6.5200 -10.8878 -3.3146 37 1 6.0888 -12.5062 -3.4459 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434754987.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:07 Heat of formation + Delta-G solvation = -205.107305 kcal Electronic energy + Delta-G solvation = -29396.551440 eV Core-core repulsion = 24374.943267 eV Total energy + Delta-G solvation = -5021.608173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.37763 -48.00873 -47.69322 -41.78675 -40.88554 -40.14331 -36.78957 -35.94549 -35.08766 -34.45096 -33.85337 -32.39674 -30.13235 -27.24918 -26.52747 -25.58816 -23.60932 -22.94396 -21.87981 -21.03324 -20.02857 -18.98484 -18.86272 -18.73860 -18.54258 -18.33528 -17.96138 -17.24297 -16.95467 -16.79731 -16.39296 -16.28573 -15.93517 -15.60771 -15.11229 -14.97126 -14.84268 -14.81073 -14.51674 -14.42087 -14.26378 -14.09420 -13.99525 -13.86679 -13.84348 -13.07302 -12.99218 -12.88455 -12.72061 -12.59362 -12.20157 -12.14906 -11.70373 -11.56944 -11.30348 -10.94463 -10.76817 -10.66717 -10.34452 -9.80429 -8.19653 -6.50183 -0.23897 1.44830 1.48340 1.49057 1.59726 1.69770 1.83057 2.13240 2.18510 2.38210 2.58675 2.96223 3.03946 3.18774 3.39241 3.51279 3.64724 3.82090 3.89519 3.90627 4.22385 4.24983 4.39138 4.54346 4.70945 4.78738 4.91420 5.41519 5.44902 5.53999 5.58406 5.67160 5.80702 6.09696 6.16404 6.55047 6.98486 7.14925 7.21046 7.63655 8.73098 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.024292 B = 0.002345 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.386480 B =11937.043762 C =12670.667241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.014 3.986 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.561 4.561 8 H 0.092 0.908 9 C 0.271 3.729 10 H 0.046 0.954 11 N -0.720 5.720 12 C 0.697 3.303 13 O -0.627 6.627 14 N -0.731 5.731 15 C 0.147 3.853 16 C 0.041 3.959 17 H 0.124 0.876 18 C -0.127 4.127 19 C 0.054 3.946 20 C 0.599 3.401 21 N -0.811 5.811 22 O -0.550 6.550 23 N -0.250 5.250 24 O -0.196 6.196 25 C 0.413 3.587 26 F -0.203 7.203 27 F -0.151 7.151 28 F -0.218 7.218 29 H 0.268 0.732 30 H 0.410 0.590 31 H 0.412 0.588 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.421 0.579 37 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.429 -18.904 -2.507 23.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.597 4.597 8 H 0.110 0.890 9 C 0.163 3.837 10 H 0.064 0.936 11 N -0.374 5.374 12 C 0.397 3.603 13 O -0.508 6.508 14 N -0.388 5.388 15 C 0.022 3.978 16 C -0.018 4.018 17 H 0.142 0.858 18 C -0.167 4.167 19 C -0.142 4.142 20 C 0.380 3.620 21 N -0.377 5.377 22 O -0.426 6.426 23 N 0.006 4.994 24 O -0.217 6.217 25 C 0.357 3.643 26 F -0.185 7.185 27 F -0.132 7.132 28 F -0.200 7.200 29 H 0.078 0.922 30 H 0.247 0.753 31 H 0.248 0.752 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.154 0.846 35 H 0.139 0.861 36 H 0.252 0.748 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 12.613 -18.846 -3.117 22.891 hybrid contribution 0.077 0.809 0.723 1.088 sum 12.690 -18.037 -2.393 22.183 Atomic orbital electron populations 1.70540 1.07462 1.28134 1.44720 1.26004 0.95911 1.03674 0.93532 0.85155 0.78521 0.77103 0.78518 1.19627 1.21034 1.18225 1.21221 0.94551 0.88291 1.55680 0.88995 1.19169 0.88396 0.86534 0.89646 0.93604 1.44988 1.17461 1.09091 1.65861 1.16185 0.84317 0.81026 0.78797 1.90896 1.21817 1.83619 1.54418 1.44755 1.16321 1.09892 1.67842 1.21300 0.95659 0.80710 1.00140 1.24100 0.87438 0.93238 0.96997 0.85814 1.22869 0.96247 0.94671 1.02899 1.26005 0.95444 0.94450 0.98273 1.16838 0.82829 0.84448 0.77858 1.43581 1.17556 1.16431 1.60102 1.90917 1.49243 1.45971 1.56438 1.78343 1.18838 0.92947 1.09280 1.91337 1.47795 1.20747 1.61842 1.23323 0.80869 0.72369 0.87764 1.92984 1.74166 1.96154 1.55192 1.93375 1.68999 1.54558 1.96314 1.93062 1.81599 1.48333 1.97013 0.92178 0.75331 0.75155 0.91697 0.88869 0.84556 0.86101 0.74782 0.74129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.56 9.50 21.45 0.20 -48.36 16 2 C 0.01 0.72 5.20 84.66 0.44 1.17 16 3 Si 0.98 40.48 29.54 68.60 2.03 42.51 16 4 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.56 -28.26 8.46 25.60 0.22 -28.04 16 8 H 0.09 4.26 7.74 -2.91 -0.02 4.23 16 9 C 0.27 13.61 2.21 44.24 0.10 13.71 16 10 H 0.05 2.68 7.58 -2.39 -0.02 2.66 16 11 N -0.72 -29.02 4.99 -461.40 -2.30 -31.32 16 12 C 0.70 27.22 8.10 179.05 1.45 28.67 16 13 O -0.63 -30.14 14.91 -4.00 -0.06 -30.20 16 14 N -0.73 -19.69 5.56 -478.52 -2.66 -22.35 16 15 C 0.15 3.22 5.36 86.38 0.46 3.68 16 16 C 0.04 0.63 3.84 31.19 0.12 0.75 16 17 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 18 C -0.13 -1.63 6.45 30.76 0.20 -1.43 16 19 C 0.05 0.78 7.28 45.76 0.33 1.11 16 20 C 0.60 8.35 8.09 86.71 0.70 9.05 16 21 N -0.81 -5.26 8.87 -175.79 -1.56 -6.82 16 22 O -0.55 -11.32 17.79 -3.90 -0.07 -11.39 16 23 N -0.25 -4.30 12.15 -42.30 -0.51 -4.82 16 24 O -0.20 -3.98 12.23 -38.32 -0.47 -4.44 16 25 C 0.41 21.44 2.81 71.98 0.20 21.64 16 26 F -0.20 -9.89 16.94 44.97 0.76 -9.13 16 27 F -0.15 -8.55 12.91 44.97 0.58 -7.97 16 28 F -0.22 -11.28 15.67 44.97 0.70 -10.58 16 29 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.41 13.74 8.55 -92.71 -0.79 12.94 16 31 H 0.41 8.68 8.49 -92.71 -0.79 7.89 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.12 1.49 7.91 -2.39 -0.02 1.47 16 36 H 0.42 1.56 8.51 -92.71 -0.79 0.77 16 37 H 0.42 1.15 8.93 -92.71 -0.83 0.32 16 Total: -1.00 -74.07 338.78 -1.11 -75.18 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -1.98 Total: 19.39 kcal Atomic # 6 Polarization: 46.08 SS G_CDS: 4.22 Total: 50.30 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -6.83 Total: -113.67 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -0.60 Total: -46.04 kcal Atomic # 9 Polarization: -29.73 SS G_CDS: 2.05 Total: -27.68 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -74.07 -1.11 -75.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434754987.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.926 kcal (2) G-P(sol) polarization free energy of solvation -74.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds