Wall clock time and date at job start Tue Mar 31 2020 20:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 117.00085 * 2 1 4 4 O 1.20827 * 119.99575 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00306 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47267 * 180.02562 * 5 3 2 7 7 N 1.46502 * 109.47196 * 180.02562 * 6 5 3 8 8 C 1.33310 * 120.00040 * 288.06750 * 7 6 5 9 9 H 1.08001 * 119.99579 * 41.61578 * 8 7 6 10 10 C 1.46787 * 120.00290 * 221.60945 * 8 7 6 11 11 N 1.29308 * 119.99978 * 22.56718 * 10 8 7 12 12 Si 1.86799 * 120.00156 * 202.56022 * 10 8 7 13 13 H 1.48498 * 109.47191 * 65.00159 * 12 10 8 14 14 H 1.48503 * 109.47224 * 185.00459 * 12 10 8 15 15 H 1.48507 * 109.47246 * 305.00234 * 12 10 8 16 16 C 1.34776 * 119.99952 * 108.07207 * 7 6 5 17 17 O 1.21516 * 119.99806 * 186.93072 * 16 7 6 18 18 C 1.47364 * 119.99856 * 6.92777 * 16 7 6 19 19 C 1.39808 * 120.20525 * 325.35332 * 18 16 7 20 20 C 1.37736 * 119.90441 * 179.97438 * 19 18 16 21 21 C 1.38590 * 120.31057 * 0.02562 * 20 19 18 22 22 N 1.48016 * 119.79491 * 180.02562 * 21 20 19 23 23 O 1.31703 * 119.99821 * 0.02562 * 22 21 20 24 24 O 1.31695 * 119.99976 * 179.97438 * 22 21 20 25 25 C 1.38061 * 120.41250 * 359.97438 * 21 20 19 26 26 C 1.38705 * 120.09055 * 0.02562 * 25 21 20 27 27 O 1.35631 * 120.15512 * 180.27538 * 26 25 21 28 28 H 1.09004 * 109.46618 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46784 * 299.99280 * 1 2 3 30 30 H 1.08997 * 109.47045 * 59.99820 * 1 2 3 31 31 H 1.09005 * 109.47105 * 59.99985 * 5 3 2 32 32 H 1.08999 * 109.47296 * 300.00385 * 5 3 2 33 33 H 1.08995 * 109.47106 * 60.00018 * 6 5 3 34 34 H 1.08999 * 109.47130 * 300.00307 * 6 5 3 35 35 H 0.96996 * 120.00505 * 184.96246 * 11 10 8 36 36 H 1.07999 * 120.04576 * 0.02562 * 19 18 16 37 37 H 1.07994 * 119.84408 * 180.02562 * 20 19 18 38 38 H 1.08002 * 119.95061 * 179.97438 * 25 21 20 39 39 H 0.96704 * 113.99795 * 269.72334 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8189 -0.0010 8 6 6.1484 2.4953 1.0957 9 1 5.8579 1.6344 1.6796 10 6 7.2978 3.3091 1.5097 11 7 7.3975 4.5360 1.1138 12 14 8.6165 2.5722 2.6086 13 1 9.3129 1.4803 1.8822 14 1 9.5969 3.6243 2.9791 15 1 7.9879 2.0264 3.8384 16 6 6.1161 3.2166 -1.1109 17 8 7.3292 3.1605 -1.1550 18 6 5.3590 3.7194 -2.2709 19 6 4.1081 3.1783 -2.5825 20 6 3.4056 3.6533 -3.6678 21 6 3.9330 4.6656 -4.4539 22 7 3.1680 5.1678 -5.6173 23 8 1.9896 4.6531 -5.9023 24 8 3.6651 6.1299 -6.3666 25 6 5.1671 5.2092 -4.1580 26 6 5.8891 4.7436 -3.0690 27 8 7.0991 5.2805 -2.7738 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 3.9557 0.7810 -0.8909 32 1 3.9564 0.7806 0.8891 33 1 3.6107 3.2356 0.8906 34 1 3.6099 3.2368 -0.8893 35 1 8.1910 5.0515 1.3269 36 1 3.6929 2.3897 -1.9725 37 1 2.4392 3.2350 -3.9074 38 1 5.5712 5.9974 -4.7759 39 1 7.8425 4.8337 -3.2014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001454945247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:51 Heat of formation + Delta-G solvation = -64.928989 kcal Electronic energy + Delta-G solvation = -29789.481648 eV Core-core repulsion = 25283.516052 eV Total energy + Delta-G solvation = -4505.965596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -40.79776 -40.28161 -38.91365 -37.95957 -36.68144 -36.43145 -34.91692 -34.24620 -33.07299 -31.54320 -30.90394 -30.02367 -27.78382 -27.10432 -25.11020 -23.96284 -22.86927 -22.24902 -20.69178 -20.25895 -18.93717 -18.01707 -17.76184 -17.58208 -16.96817 -16.68346 -16.59276 -16.00477 -15.82147 -15.74551 -15.22193 -14.99812 -14.73287 -14.11490 -13.92715 -13.84204 -13.53743 -13.28826 -12.75648 -12.50203 -12.31737 -12.17183 -11.95587 -11.85124 -11.63472 -11.21890 -11.13948 -11.13425 -11.06056 -10.88220 -10.73654 -10.56254 -10.55136 -10.48382 -10.40539 -9.24699 -9.14545 -8.86597 -8.53597 -7.84147 -6.68757 -4.08751 -0.64824 1.01958 1.08505 1.29736 2.20727 2.65865 3.02325 3.11794 3.12862 3.16807 3.83777 4.10326 4.15203 4.45495 4.47702 4.69272 4.75960 4.86882 4.97781 4.99583 5.05790 5.12848 5.14658 5.16169 5.33511 5.46524 5.49862 5.67789 5.73824 5.85613 5.93691 6.01582 6.18636 6.29397 6.40575 6.44568 6.94442 7.00961 7.63839 7.73486 7.86188 8.35346 8.75774 9.05657 9.86047 10.29291 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.007921 B = 0.005291 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3533.911114 B = 5290.524695 C = 8525.332753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.463 3.537 4 O -0.505 6.505 5 C -0.132 4.132 6 C 0.065 3.935 7 N -0.395 5.395 8 C -0.364 4.364 9 H 0.096 0.904 10 C 0.079 3.921 11 N -0.766 5.766 12 Si 0.920 3.080 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.269 1.269 16 C 0.479 3.521 17 O -0.538 6.538 18 C -0.064 4.064 19 C -0.118 4.118 20 C -0.062 4.062 21 C -0.005 4.005 22 N -0.006 5.006 23 O -0.190 6.190 24 O -0.191 6.191 25 C -0.091 4.091 26 C 0.151 3.849 27 O -0.463 6.463 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.283 0.717 36 H 0.164 0.836 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 -6.631 -2.718 9.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.305 3.695 4 O -0.393 6.393 5 C -0.171 4.171 6 C -0.058 4.058 7 N -0.111 5.111 8 C -0.491 4.491 9 H 0.113 0.887 10 C -0.144 4.144 11 N -0.392 5.392 12 Si 0.745 3.255 13 H -0.191 1.191 14 H -0.208 1.208 15 H -0.194 1.194 16 C 0.271 3.729 17 O -0.419 6.419 18 C -0.071 4.071 19 C -0.138 4.138 20 C -0.082 4.082 21 C -0.093 4.093 22 N 0.466 4.534 23 O -0.379 6.379 24 O -0.381 6.381 25 C -0.111 4.111 26 C 0.103 3.897 27 O -0.274 6.274 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.124 0.876 32 H 0.137 0.863 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.181 0.819 37 H 0.170 0.830 38 H 0.175 0.825 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -6.268 -5.944 -1.844 8.833 hybrid contribution 0.284 -0.173 -0.085 0.344 sum -5.984 -6.117 -1.929 8.772 Atomic orbital electron populations 1.23248 0.76630 1.03488 1.02592 1.86532 1.23251 1.33779 1.84248 1.23930 0.92210 0.81234 0.72108 1.90686 1.67276 1.36202 1.45087 1.21868 0.86464 1.01865 1.06867 1.22487 0.85388 0.92812 1.05086 1.42216 1.02534 1.56412 1.09943 1.20025 1.13830 1.10373 1.04877 0.88674 1.26920 0.99355 0.92864 0.95264 1.68854 1.26753 1.07447 1.36172 0.86140 0.80234 0.79577 0.79537 1.19121 1.20761 1.19433 1.17309 0.87448 0.86823 0.81305 1.90579 1.12833 1.57691 1.80829 1.21544 0.94171 0.93266 0.98081 1.21808 0.93753 1.02294 0.95907 1.20953 1.00981 0.93619 0.92599 1.20042 0.94796 1.03481 0.90972 1.50426 1.01723 0.99597 1.01661 1.96240 1.02790 1.60962 1.77943 1.96246 1.72796 1.20427 1.48586 1.21206 0.92736 1.00480 0.96671 1.18042 0.88849 0.91516 0.91329 1.84795 1.13044 1.56503 1.73011 0.88296 0.91941 0.91848 0.87557 0.86276 0.90200 0.88319 0.90426 0.81910 0.82961 0.82533 0.74417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.29 10.57 -39.27 -0.41 -4.70 16 3 C 0.46 6.25 7.95 36.00 0.29 6.54 16 4 O -0.51 -8.02 15.73 -18.75 -0.29 -8.31 16 5 C -0.13 -1.80 5.13 -27.89 -0.14 -1.95 16 6 C 0.07 1.13 4.17 -4.04 -0.02 1.11 16 7 N -0.40 -8.48 2.55 -114.50 -0.29 -8.77 16 8 C -0.36 -8.45 9.10 -13.46 -0.12 -8.58 16 9 H 0.10 2.04 7.46 -52.49 -0.39 1.65 16 10 C 0.08 1.92 4.38 -15.16 -0.07 1.85 16 11 N -0.77 -19.78 12.13 56.00 0.68 -19.10 16 12 Si 0.92 18.85 29.69 -169.99 -5.05 13.80 16 13 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 16 C 0.48 10.71 6.45 -12.55 -0.08 10.63 16 17 O -0.54 -13.68 13.96 -12.52 -0.17 -13.85 16 18 C -0.06 -1.19 5.54 -104.84 -0.58 -1.77 16 19 C -0.12 -1.81 7.44 -39.18 -0.29 -2.10 16 20 C -0.06 -0.90 9.55 -39.63 -0.38 -1.27 16 21 C 0.00 -0.08 6.89 -79.88 -0.55 -0.63 16 22 N -0.01 -0.11 4.98 33.99 0.17 0.06 16 23 O -0.19 -3.33 19.13 -31.57 -0.60 -3.93 16 24 O -0.19 -3.42 19.13 -31.56 -0.60 -4.02 16 25 C -0.09 -1.42 9.50 -39.47 -0.38 -1.79 16 26 C 0.15 2.64 6.69 -38.65 -0.26 2.38 16 27 O -0.46 -8.36 12.13 -36.47 -0.44 -8.80 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.11 1.29 7.43 -51.93 -0.39 0.90 16 32 H 0.12 1.58 7.50 -51.93 -0.39 1.19 16 33 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 34 H 0.10 1.64 3.44 -56.46 -0.19 1.45 16 35 H 0.28 6.96 8.27 -40.82 -0.34 6.62 16 36 H 0.16 2.25 3.78 -52.49 -0.20 2.05 16 37 H 0.15 1.91 7.56 -52.49 -0.40 1.51 16 38 H 0.16 2.21 7.55 -52.49 -0.40 1.82 16 39 H 0.40 5.63 9.06 45.56 0.41 6.04 16 LS Contribution 349.23 15.07 5.26 5.26 Total: -1.00 -31.24 349.23 -6.03 -37.27 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -2.76 Total: 9.30 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -1.51 Total: 5.80 kcal Atomic # 7 Polarization: -28.36 SS G_CDS: 0.56 Total: -27.81 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -2.53 Total: -43.63 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.05 Total: 13.80 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.24 -6.03 -37.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454945247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.660 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds