Wall clock time and date at job start Tue Mar 31 2020 20:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 117.00085 * 2 1 4 4 O 1.20827 * 119.99575 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00306 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47267 * 180.02562 * 5 3 2 7 7 N 1.46502 * 109.47196 * 180.02562 * 6 5 3 8 8 C 1.33310 * 120.00040 * 288.06750 * 7 6 5 9 9 H 1.08001 * 119.99579 * 41.61578 * 8 7 6 10 10 C 1.46787 * 120.00290 * 221.60945 * 8 7 6 11 11 N 1.29308 * 119.99978 * 22.56718 * 10 8 7 12 12 Si 1.86799 * 120.00156 * 202.56022 * 10 8 7 13 13 H 1.48498 * 109.47191 * 65.00159 * 12 10 8 14 14 H 1.48503 * 109.47224 * 185.00459 * 12 10 8 15 15 H 1.48507 * 109.47246 * 305.00234 * 12 10 8 16 16 C 1.34776 * 119.99952 * 108.07207 * 7 6 5 17 17 O 1.21516 * 119.99806 * 186.93072 * 16 7 6 18 18 C 1.47364 * 119.99856 * 6.92777 * 16 7 6 19 19 C 1.39808 * 120.20525 * 325.35332 * 18 16 7 20 20 C 1.37736 * 119.90441 * 179.97438 * 19 18 16 21 21 C 1.38590 * 120.31057 * 0.02562 * 20 19 18 22 22 N 1.48016 * 119.79491 * 180.02562 * 21 20 19 23 23 O 1.31703 * 119.99821 * 0.02562 * 22 21 20 24 24 O 1.31695 * 119.99976 * 179.97438 * 22 21 20 25 25 C 1.38061 * 120.41250 * 359.97438 * 21 20 19 26 26 C 1.38705 * 120.09055 * 0.02562 * 25 21 20 27 27 O 1.35631 * 120.15512 * 180.27538 * 26 25 21 28 28 H 1.09004 * 109.46618 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46784 * 299.99280 * 1 2 3 30 30 H 1.08997 * 109.47045 * 59.99820 * 1 2 3 31 31 H 1.09005 * 109.47105 * 59.99985 * 5 3 2 32 32 H 1.08999 * 109.47296 * 300.00385 * 5 3 2 33 33 H 1.08995 * 109.47106 * 60.00018 * 6 5 3 34 34 H 1.08999 * 109.47130 * 300.00307 * 6 5 3 35 35 H 0.96996 * 120.00505 * 184.96246 * 11 10 8 36 36 H 1.07999 * 120.04576 * 0.02562 * 19 18 16 37 37 H 1.07994 * 119.84408 * 180.02562 * 20 19 18 38 38 H 1.08002 * 119.95061 * 179.97438 * 25 21 20 39 39 H 0.96704 * 113.99795 * 269.72334 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8189 -0.0010 8 6 6.1484 2.4953 1.0957 9 1 5.8579 1.6344 1.6796 10 6 7.2978 3.3091 1.5097 11 7 7.3975 4.5360 1.1138 12 14 8.6165 2.5722 2.6086 13 1 9.3129 1.4803 1.8822 14 1 9.5969 3.6243 2.9791 15 1 7.9879 2.0264 3.8384 16 6 6.1161 3.2166 -1.1109 17 8 7.3292 3.1605 -1.1550 18 6 5.3590 3.7194 -2.2709 19 6 4.1081 3.1783 -2.5825 20 6 3.4056 3.6533 -3.6678 21 6 3.9330 4.6656 -4.4539 22 7 3.1680 5.1678 -5.6173 23 8 1.9896 4.6531 -5.9023 24 8 3.6651 6.1299 -6.3666 25 6 5.1671 5.2092 -4.1580 26 6 5.8891 4.7436 -3.0690 27 8 7.0991 5.2805 -2.7738 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 3.9557 0.7810 -0.8909 32 1 3.9564 0.7806 0.8891 33 1 3.6107 3.2356 0.8906 34 1 3.6099 3.2368 -0.8893 35 1 8.1910 5.0515 1.3269 36 1 3.6929 2.3897 -1.9725 37 1 2.4392 3.2350 -3.9074 38 1 5.5712 5.9974 -4.7759 39 1 7.8425 4.8337 -3.2014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454945247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:50 Heat of formation + Delta-G solvation = -84.570464 kcal Electronic energy + Delta-G solvation = -29790.333366 eV Core-core repulsion = 25283.516052 eV Total energy + Delta-G solvation = -4506.817314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.14489 -41.41674 -40.37891 -39.41352 -38.01193 -37.57556 -36.48925 -35.66250 -34.68067 -32.99458 -32.25016 -31.37732 -28.66913 -28.53574 -26.59197 -25.30565 -24.21348 -23.67474 -21.92102 -21.65153 -20.34251 -19.42426 -19.13948 -18.87229 -18.36207 -17.77321 -17.71722 -17.34001 -17.20142 -17.18150 -16.69826 -16.37170 -16.18419 -15.55130 -15.37628 -15.29195 -14.62531 -14.35997 -13.98264 -13.95976 -13.64830 -13.57503 -13.23653 -13.13684 -12.82480 -12.77250 -12.68769 -12.64008 -12.47073 -12.13482 -12.10653 -11.95849 -11.85152 -11.74046 -11.56983 -10.93012 -10.60633 -10.22926 -10.19627 -9.51958 -8.40033 -5.89324 -2.00960 -0.30043 -0.28231 -0.10229 1.15506 1.40949 1.48298 1.51703 1.66747 1.77611 2.22467 2.48743 2.79340 2.97642 3.06434 3.20565 3.46816 3.60730 3.69026 3.79312 3.83600 3.93336 4.17072 4.23236 4.37408 4.39705 4.43434 4.46632 4.47352 4.62593 4.75159 4.78229 4.83408 5.02539 5.10644 5.30165 5.38657 5.51582 5.98832 6.59452 6.67779 6.71721 7.12477 7.42868 8.19758 8.59781 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.007921 B = 0.005291 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3533.911114 B = 5290.524695 C = 8525.332753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.473 3.527 4 O -0.531 6.531 5 C -0.124 4.124 6 C 0.071 3.929 7 N -0.409 5.409 8 C -0.402 4.402 9 H 0.103 0.897 10 C 0.038 3.962 11 N -0.819 5.819 12 Si 0.974 3.026 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.252 1.252 16 C 0.476 3.524 17 O -0.576 6.576 18 C -0.082 4.082 19 C -0.100 4.100 20 C -0.048 4.048 21 C 0.002 3.998 22 N -0.010 5.010 23 O -0.172 6.172 24 O -0.201 6.201 25 C -0.077 4.077 26 C 0.146 3.854 27 O -0.482 6.482 28 H 0.131 0.869 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.275 0.725 36 H 0.181 0.819 37 H 0.184 0.816 38 H 0.174 0.826 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.077 -7.875 -4.483 12.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.317 3.683 4 O -0.421 6.421 5 C -0.163 4.163 6 C -0.051 4.051 7 N -0.125 5.125 8 C -0.529 4.529 9 H 0.120 0.880 10 C -0.180 4.180 11 N -0.448 5.448 12 Si 0.797 3.203 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.176 1.176 16 C 0.267 3.733 17 O -0.459 6.459 18 C -0.087 4.087 19 C -0.118 4.118 20 C -0.067 4.067 21 C -0.086 4.086 22 N 0.466 4.534 23 O -0.368 6.368 24 O -0.388 6.388 25 C -0.097 4.097 26 C 0.098 3.902 27 O -0.294 6.294 28 H 0.149 0.851 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.198 0.802 37 H 0.201 0.799 38 H 0.191 0.809 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -8.597 -7.204 -3.585 11.775 hybrid contribution 0.722 0.242 0.026 0.762 sum -7.875 -6.962 -3.558 11.097 Atomic orbital electron populations 1.23580 0.74677 1.05722 1.02700 1.86513 1.25083 1.32487 1.83656 1.23683 0.91847 0.81369 0.71424 1.90682 1.67757 1.37136 1.46536 1.21696 0.87073 0.99377 1.08109 1.22428 0.82966 0.95246 1.04485 1.42202 1.03940 1.57156 1.09233 1.20159 1.15605 1.11395 1.05752 0.87996 1.27691 1.01210 0.92977 0.96097 1.68961 1.27165 1.08756 1.39871 0.85335 0.78049 0.78253 0.78634 1.20118 1.21291 1.17611 1.17908 0.87392 0.85716 0.82261 1.90531 1.14762 1.58717 1.81901 1.21480 0.95637 0.94542 0.97039 1.21911 0.92156 1.01872 0.95910 1.21232 1.01716 0.92467 0.91251 1.20256 0.94586 1.03294 0.90415 1.50562 1.01718 0.99449 1.01700 1.96244 1.02647 1.60327 1.77577 1.96270 1.72869 1.20761 1.48919 1.21252 0.92319 1.00205 0.95958 1.18142 0.88898 0.91540 0.91634 1.84755 1.13902 1.57065 1.73698 0.85065 0.92140 0.91504 0.85570 0.85891 0.91992 0.87672 0.91326 0.80197 0.79891 0.80871 0.72831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.36 -7.61 10.57 -51.46 -0.54 -8.15 16 3 C 0.47 11.83 7.95 71.23 0.57 12.39 16 4 O -0.53 -15.95 15.73 21.96 0.35 -15.60 16 5 C -0.12 -3.21 5.13 29.85 0.15 -3.06 16 6 C 0.07 2.44 4.17 86.38 0.36 2.80 16 7 N -0.41 -17.92 2.55 -634.47 -1.62 -19.54 16 8 C -0.40 -19.32 9.10 86.71 0.79 -18.54 16 9 H 0.10 4.51 7.46 -2.91 -0.02 4.49 16 10 C 0.04 1.91 4.38 87.30 0.38 2.30 16 11 N -0.82 -44.71 12.13 23.26 0.28 -44.43 16 12 Si 0.97 40.38 29.69 68.60 2.04 42.42 16 13 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 14 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 16 C 0.48 21.64 6.45 86.65 0.56 22.20 16 17 O -0.58 -30.32 13.96 13.33 0.19 -30.14 16 18 C -0.08 -2.95 5.54 -20.01 -0.11 -3.06 16 19 C -0.10 -2.78 7.44 22.53 0.17 -2.61 16 20 C -0.05 -1.18 9.55 22.24 0.21 -0.97 16 21 C 0.00 0.04 6.89 36.42 0.25 0.29 16 22 N -0.01 -0.30 4.98 -46.36 -0.23 -0.53 16 23 O -0.17 -5.28 19.13 3.51 0.07 -5.21 16 24 O -0.20 -6.52 19.13 3.52 0.07 -6.46 16 25 C -0.08 -2.22 9.50 22.34 0.21 -2.01 16 26 C 0.15 4.96 6.69 22.87 0.15 5.11 16 27 O -0.48 -17.51 12.13 -72.34 -0.88 -18.38 16 28 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 30 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 31 H 0.13 2.75 7.43 -2.38 -0.02 2.74 16 32 H 0.12 3.15 7.50 -2.39 -0.02 3.13 16 33 H 0.06 2.33 8.10 -2.39 -0.02 2.31 16 34 H 0.11 3.36 3.44 -6.65 -0.02 3.34 16 35 H 0.28 14.48 8.27 -92.71 -0.77 13.71 16 36 H 0.18 4.46 3.78 -2.91 -0.01 4.45 16 37 H 0.18 3.56 7.56 -2.91 -0.02 3.54 16 38 H 0.17 4.43 7.55 -2.91 -0.02 4.40 16 39 H 0.41 11.88 9.06 -74.05 -0.67 11.21 16 Total: -1.00 -69.43 349.23 5.08 -64.35 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.47 Total: 25.24 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 4.89 Total: 16.43 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -1.56 Total: -64.50 kcal Atomic # 8 Polarization: -83.19 SS G_CDS: -0.76 Total: -83.95 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.04 Total: 42.42 kcal Total: -69.43 5.08 -64.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454945247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.220 kcal (2) G-P(sol) polarization free energy of solvation -69.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds