Wall clock time and date at job start Tue Mar 31 2020 20:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28469 * 124.87575 * 2 1 4 4 C 1.31861 * 110.06372 * 179.97438 * 3 2 1 5 5 C 1.47569 * 126.52933 * 179.97438 * 4 3 2 6 6 O 1.21499 * 120.00288 * 180.02562 * 5 4 3 7 7 O 1.34751 * 119.99653 * 0.02562 * 5 4 3 8 8 C 1.35913 * 116.99919 * 175.01506 * 7 5 4 9 9 C 1.38829 * 120.01926 * 255.31076 * 8 7 5 10 10 C 1.38193 * 120.08110 * 179.97438 * 9 8 7 11 11 C 1.38156 * 120.12082 * 359.74224 * 10 9 8 12 12 C 1.38893 * 120.04110 * 0.51027 * 11 10 9 13 13 O 1.35757 * 120.03907 * 179.76758 * 12 11 10 14 14 C 1.34826 * 116.99949 * 174.12829 * 13 12 11 15 15 H 1.08005 * 120.00117 * 5.06949 * 14 13 12 16 16 C 1.38651 * 120.00138 * 185.06271 * 14 13 12 17 17 N 1.31561 * 119.99766 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00459 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46940 * 59.99985 * 18 16 14 20 20 H 1.48493 * 109.47271 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46721 * 300.00259 * 18 16 14 22 22 C 1.38577 * 120.02256 * 75.28554 * 8 7 5 23 23 C 1.41554 * 106.94727 * 0.22609 * 4 3 2 24 24 C 1.35046 * 124.88226 * 179.97438 * 2 1 3 25 25 C 1.50704 * 126.37738 * 0.03868 * 24 2 1 26 26 F 1.39897 * 109.46980 * 210.00288 * 25 24 2 27 27 F 1.39903 * 109.46816 * 329.99958 * 25 24 2 28 28 H 1.09004 * 109.47034 * 90.02653 * 1 2 3 29 29 H 1.08999 * 109.47029 * 210.02287 * 1 2 3 30 30 H 1.08999 * 109.47422 * 330.02828 * 1 2 3 31 31 H 1.07998 * 119.96633 * 0.02562 * 9 8 7 32 32 H 1.08000 * 119.93700 * 180.02562 * 10 9 8 33 33 H 1.08003 * 119.97878 * 180.27954 * 11 10 9 34 34 H 0.97006 * 119.99726 * 180.02562 * 17 16 14 35 35 H 1.08000 * 120.06015 * 0.02562 * 22 8 7 36 36 H 1.08003 * 127.24749 * 179.75647 * 23 4 3 37 37 H 1.08998 * 109.46644 * 89.99946 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1996 1.0540 0.0000 4 6 3.4743 0.7169 0.0006 5 6 4.6267 1.6387 0.0002 6 8 5.7584 1.1966 0.0003 7 8 4.4237 2.9708 -0.0002 8 6 5.5235 3.7625 0.1047 9 6 5.8084 4.4000 1.3046 10 6 6.9266 5.2049 1.4129 11 6 7.7670 5.3734 0.3294 12 6 7.4839 4.7422 -0.8750 13 8 8.3073 4.9117 -1.9411 14 6 8.0441 4.1771 -3.0406 15 1 7.1627 3.5539 -3.0754 16 6 8.9048 4.2219 -4.1267 17 7 9.9781 4.9816 -4.0845 18 14 8.5398 3.2048 -5.6504 19 1 7.2282 3.6123 -6.2151 20 1 9.6043 3.4281 -6.6613 21 1 8.4963 1.7658 -5.2861 22 6 6.3613 3.9335 -0.9858 23 6 3.5271 -0.6977 -0.0044 24 6 2.2373 -1.1078 0.0005 25 6 1.7531 -2.5350 0.0003 26 9 2.6846 -3.3435 0.6604 27 9 0.5212 -2.6095 0.6592 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 5.1560 4.2662 2.1548 32 1 7.1462 5.6994 2.3475 33 1 8.6427 5.9994 0.4179 34 1 10.5801 5.0132 -4.8445 35 1 6.1412 3.4384 -1.9200 36 1 4.4106 -1.3189 -0.0091 37 1 1.6370 -2.8790 -1.0274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460845782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:00 Heat of formation + Delta-G solvation = -79.723182 kcal Electronic energy + Delta-G solvation = -27934.195131 eV Core-core repulsion = 23316.500495 eV Total energy + Delta-G solvation = -4617.694636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.70334 -47.72038 -43.17674 -40.72372 -38.74304 -37.00965 -35.69789 -33.99428 -32.45400 -32.28405 -29.83405 -28.95245 -28.14574 -26.71061 -25.43328 -24.44077 -22.17767 -21.69296 -21.51141 -20.26669 -18.64720 -18.27048 -18.21484 -17.71204 -17.64704 -16.79540 -16.70463 -15.94253 -15.84446 -15.67047 -15.10639 -14.75510 -14.38155 -14.33695 -14.22180 -14.05780 -13.83903 -13.52546 -13.46043 -13.24110 -13.04614 -12.79499 -12.62246 -12.11309 -11.87838 -11.54115 -11.34980 -11.27595 -11.06239 -10.87536 -10.60159 -10.49962 -10.29789 -9.80280 -9.58407 -9.51991 -8.85412 -8.16549 -7.34272 -6.46464 -4.05734 1.05203 1.36888 1.66542 1.89291 2.22762 2.78954 3.03377 3.12986 3.13928 3.17326 3.19123 3.44124 3.76231 3.96584 4.10699 4.21697 4.47174 4.59001 4.65959 4.89819 4.93564 5.02117 5.08571 5.20389 5.26662 5.61096 5.78539 5.82839 6.00339 6.05604 6.17056 6.28702 6.56566 6.84353 6.99259 7.09465 7.14702 7.30294 7.35734 7.60225 7.97081 8.12698 8.98649 9.64568 10.70969 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012685 B = 0.002859 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.797535 B = 9792.945833 C =11191.979220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.256 5.256 3 N -0.208 5.208 4 C 0.005 3.995 5 C 0.546 3.454 6 O -0.468 6.468 7 O -0.280 6.280 8 C 0.118 3.882 9 C -0.208 4.208 10 C -0.065 4.065 11 C -0.184 4.184 12 C 0.163 3.837 13 O -0.170 6.170 14 C -0.393 4.393 15 H 0.091 0.909 16 C 0.042 3.958 17 N -0.860 5.860 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.268 1.268 22 C -0.228 4.228 23 C -0.121 4.121 24 C -0.083 4.083 25 C 0.356 3.644 26 F -0.181 7.181 27 F -0.196 7.196 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.271 0.729 35 H 0.133 0.867 36 H 0.177 0.823 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.201 -13.738 7.636 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.047 5.047 3 N -0.047 5.047 4 C -0.152 4.152 5 C 0.388 3.612 6 O -0.350 6.350 7 O -0.194 6.194 8 C 0.078 3.922 9 C -0.227 4.227 10 C -0.084 4.084 11 C -0.203 4.203 12 C 0.109 3.891 13 O -0.073 6.073 14 C -0.469 4.469 15 H 0.108 0.892 16 C -0.163 4.163 17 N -0.495 5.495 18 Si 0.764 3.236 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.193 1.193 22 C -0.247 4.247 23 C -0.149 4.149 24 C -0.207 4.207 25 C 0.301 3.699 26 F -0.163 7.163 27 F -0.177 7.177 28 H 0.110 0.890 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.195 0.805 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.243 -12.753 7.439 25.055 hybrid contribution 0.213 -1.185 -0.718 1.402 sum -20.030 -13.938 6.721 25.311 Atomic orbital electron populations 1.22701 0.72037 1.07267 1.05477 1.45406 1.08261 1.01696 1.49318 1.73855 1.02961 1.12332 1.15519 1.20737 0.89677 0.92175 1.12577 1.19693 0.86609 0.81264 0.73672 1.90951 1.22923 1.77450 1.43641 1.84620 1.35512 1.16462 1.82773 1.18229 0.86865 0.93030 0.94124 1.20523 1.00611 1.05743 0.95859 1.20489 0.93151 0.97177 0.97551 1.20345 1.02621 1.06003 0.91378 1.19105 0.89229 0.92236 0.88547 1.83998 1.47189 1.56932 1.19164 1.21279 1.10125 1.24579 0.90907 0.89198 1.25277 0.94828 0.97357 0.98800 1.70030 1.11704 1.36309 1.31442 0.85792 0.78431 0.79698 0.79647 1.19447 1.20128 1.19350 1.21219 0.97205 1.06729 0.99578 1.21560 0.96484 0.93103 1.03748 1.21749 0.92380 0.90931 1.15678 1.19621 0.72587 0.84060 0.93654 1.93074 1.65891 1.73620 1.83668 1.92917 1.44183 1.96452 1.84185 0.88953 0.86785 0.87718 0.86661 0.85904 0.85802 0.91868 0.84968 0.80525 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 11.03 59.85 0.66 0.98 16 2 N -0.26 -2.51 3.70 -63.85 -0.24 -2.75 16 3 N -0.21 -2.83 11.99 33.41 0.40 -2.43 16 4 C 0.00 0.07 7.17 -82.79 -0.59 -0.52 16 5 C 0.55 10.21 7.83 34.54 0.27 10.48 16 6 O -0.47 -9.93 16.40 -19.26 -0.32 -10.25 16 7 O -0.28 -5.52 10.04 -24.87 -0.25 -5.77 16 8 C 0.12 2.52 5.19 -39.24 -0.20 2.31 16 9 C -0.21 -3.96 9.99 -39.38 -0.39 -4.35 16 10 C -0.07 -1.20 10.03 -39.63 -0.40 -1.59 16 11 C -0.18 -3.95 9.99 -39.37 -0.39 -4.34 16 12 C 0.16 4.10 6.65 -39.13 -0.26 3.84 16 13 O -0.17 -4.94 9.76 0.04 0.00 -4.94 16 14 C -0.39 -11.31 9.49 30.88 0.29 -11.02 16 15 H 0.09 2.45 5.20 -52.48 -0.27 2.18 16 16 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16 17 N -0.86 -25.44 13.67 55.48 0.76 -24.69 16 18 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 C -0.23 -5.43 8.59 -39.25 -0.34 -5.77 16 23 C -0.12 -1.46 10.41 -39.35 -0.41 -1.87 16 24 C -0.08 -0.78 6.66 -82.21 -0.55 -1.32 16 25 C 0.36 2.13 5.72 36.01 0.21 2.34 16 26 F -0.18 -1.47 17.06 2.25 0.04 -1.43 16 27 F -0.20 -1.19 14.49 2.25 0.03 -1.15 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.11 0.40 5.44 -51.93 -0.28 0.11 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.12 2.48 8.06 -52.48 -0.42 2.05 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.13 3.24 5.64 -52.49 -0.30 2.95 16 36 H 0.18 1.92 8.06 -52.48 -0.42 1.49 16 37 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -35.49 343.44 -4.57 -40.06 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -2.95 Total: 1.93 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -2.20 Total: -9.75 kcal Atomic # 7 Polarization: -30.79 SS G_CDS: 0.92 Total: -29.87 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.57 Total: -20.96 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.07 Total: -2.58 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.49 -4.57 -40.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460845782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.667 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds