Wall clock time and date at job start Tue Mar 31 2020 20:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28469 * 124.87575 * 2 1 4 4 C 1.31861 * 110.06372 * 179.97438 * 3 2 1 5 5 C 1.47569 * 126.52933 * 179.97438 * 4 3 2 6 6 O 1.21499 * 120.00288 * 180.02562 * 5 4 3 7 7 O 1.34751 * 119.99653 * 0.02562 * 5 4 3 8 8 C 1.35913 * 116.99919 * 175.01506 * 7 5 4 9 9 C 1.38829 * 120.01926 * 255.31076 * 8 7 5 10 10 C 1.38193 * 120.08110 * 179.97438 * 9 8 7 11 11 C 1.38156 * 120.12082 * 359.74224 * 10 9 8 12 12 C 1.38893 * 120.04110 * 0.51027 * 11 10 9 13 13 O 1.35757 * 120.03907 * 179.76758 * 12 11 10 14 14 C 1.34826 * 116.99949 * 174.12829 * 13 12 11 15 15 H 1.08005 * 120.00117 * 5.06949 * 14 13 12 16 16 C 1.38651 * 120.00138 * 185.06271 * 14 13 12 17 17 N 1.31561 * 119.99766 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00459 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46940 * 59.99985 * 18 16 14 20 20 H 1.48493 * 109.47271 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46721 * 300.00259 * 18 16 14 22 22 C 1.38577 * 120.02256 * 75.28554 * 8 7 5 23 23 C 1.41554 * 106.94727 * 0.22609 * 4 3 2 24 24 C 1.35046 * 124.88226 * 179.97438 * 2 1 3 25 25 C 1.50704 * 126.37738 * 0.03868 * 24 2 1 26 26 F 1.39897 * 109.46980 * 210.00288 * 25 24 2 27 27 F 1.39903 * 109.46816 * 329.99958 * 25 24 2 28 28 H 1.09004 * 109.47034 * 90.02653 * 1 2 3 29 29 H 1.08999 * 109.47029 * 210.02287 * 1 2 3 30 30 H 1.08999 * 109.47422 * 330.02828 * 1 2 3 31 31 H 1.07998 * 119.96633 * 0.02562 * 9 8 7 32 32 H 1.08000 * 119.93700 * 180.02562 * 10 9 8 33 33 H 1.08003 * 119.97878 * 180.27954 * 11 10 9 34 34 H 0.97006 * 119.99726 * 180.02562 * 17 16 14 35 35 H 1.08000 * 120.06015 * 0.02562 * 22 8 7 36 36 H 1.08003 * 127.24749 * 179.75647 * 23 4 3 37 37 H 1.08998 * 109.46644 * 89.99946 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1996 1.0540 0.0000 4 6 3.4743 0.7169 0.0006 5 6 4.6267 1.6387 0.0002 6 8 5.7584 1.1966 0.0003 7 8 4.4237 2.9708 -0.0002 8 6 5.5235 3.7625 0.1047 9 6 5.8084 4.4000 1.3046 10 6 6.9266 5.2049 1.4129 11 6 7.7670 5.3734 0.3294 12 6 7.4839 4.7422 -0.8750 13 8 8.3073 4.9117 -1.9411 14 6 8.0441 4.1771 -3.0406 15 1 7.1627 3.5539 -3.0754 16 6 8.9048 4.2219 -4.1267 17 7 9.9781 4.9816 -4.0845 18 14 8.5398 3.2048 -5.6504 19 1 7.2282 3.6123 -6.2151 20 1 9.6043 3.4281 -6.6613 21 1 8.4963 1.7658 -5.2861 22 6 6.3613 3.9335 -0.9858 23 6 3.5271 -0.6977 -0.0044 24 6 2.2373 -1.1078 0.0005 25 6 1.7531 -2.5350 0.0003 26 9 2.6846 -3.3435 0.6604 27 9 0.5212 -2.6095 0.6592 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 5.1560 4.2662 2.1548 32 1 7.1462 5.6994 2.3475 33 1 8.6427 5.9994 0.4179 34 1 10.5801 5.0132 -4.8445 35 1 6.1412 3.4384 -1.9200 36 1 4.4106 -1.3189 -0.0091 37 1 1.6370 -2.8790 -1.0274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460845782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:59 Heat of formation + Delta-G solvation = -102.751360 kcal Electronic energy + Delta-G solvation = -27935.193707 eV Core-core repulsion = 23316.500495 eV Total energy + Delta-G solvation = -4618.693213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.20385 -48.23323 -44.08140 -42.29207 -40.56571 -38.68340 -37.40862 -34.81522 -34.35395 -33.25910 -31.49478 -30.70441 -29.00461 -27.57971 -27.29321 -25.61791 -23.68714 -23.24043 -22.53571 -21.57770 -20.13589 -19.66343 -19.30864 -18.76366 -18.17709 -18.07687 -17.73124 -17.43026 -17.12256 -16.89619 -16.56222 -16.12214 -15.93208 -15.66361 -15.39038 -15.16707 -14.91733 -14.71937 -14.66909 -14.51508 -14.07578 -13.82417 -13.69040 -13.28385 -13.22043 -13.05324 -12.81681 -12.73366 -12.59076 -12.20496 -12.18530 -12.16068 -11.97903 -11.52524 -10.87063 -10.67379 -10.46630 -9.85865 -9.19413 -8.54139 -6.23612 -0.10156 0.08429 0.47365 0.51619 1.05176 1.29311 1.39841 1.45894 1.59395 1.74522 2.12593 2.41408 2.69532 2.90208 3.00459 3.04377 3.33829 3.40391 3.77138 3.84638 3.96521 4.02646 4.14642 4.25694 4.28537 4.29328 4.36564 4.49371 4.62408 4.67006 4.88908 4.92090 4.99904 5.23739 5.34468 5.36675 5.45109 5.50716 5.91791 5.92515 6.34837 6.63171 6.89342 7.63607 8.67870 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012685 B = 0.002859 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.797535 B = 9792.945833 C =11191.979220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.241 5.241 3 N -0.226 5.226 4 C -0.030 4.030 5 C 0.547 3.453 6 O -0.505 6.505 7 O -0.282 6.282 8 C 0.108 3.892 9 C -0.189 4.189 10 C -0.046 4.046 11 C -0.189 4.189 12 C 0.128 3.872 13 O -0.218 6.218 14 C -0.420 4.420 15 H 0.090 0.910 16 C -0.014 4.014 17 N -0.912 5.912 18 Si 1.013 2.987 19 H -0.257 1.257 20 H -0.261 1.261 21 H -0.262 1.262 22 C -0.245 4.245 23 C -0.136 4.136 24 C -0.065 4.065 25 C 0.361 3.639 26 F -0.193 7.193 27 F -0.193 7.193 28 H 0.118 0.882 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.154 0.846 32 H 0.179 0.821 33 H 0.135 0.865 34 H 0.276 0.724 35 H 0.110 0.890 36 H 0.181 0.819 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.304 -15.443 8.918 29.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.032 5.032 3 N -0.067 5.067 4 C -0.183 4.183 5 C 0.391 3.609 6 O -0.389 6.389 7 O -0.196 6.196 8 C 0.067 3.933 9 C -0.207 4.207 10 C -0.063 4.063 11 C -0.208 4.208 12 C 0.077 3.923 13 O -0.124 6.124 14 C -0.496 4.496 15 H 0.107 0.893 16 C -0.213 4.213 17 N -0.549 5.549 18 Si 0.832 3.168 19 H -0.181 1.181 20 H -0.185 1.185 21 H -0.187 1.187 22 C -0.265 4.265 23 C -0.164 4.164 24 C -0.191 4.191 25 C 0.306 3.694 26 F -0.175 7.175 27 F -0.174 7.174 28 H 0.136 0.864 29 H 0.152 0.848 30 H 0.130 0.870 31 H 0.172 0.828 32 H 0.196 0.804 33 H 0.153 0.847 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.198 0.802 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -23.398 -14.452 8.772 28.867 hybrid contribution 0.876 -0.685 -0.792 1.365 sum -22.522 -15.138 7.980 28.286 Atomic orbital electron populations 1.23201 0.69034 1.08645 1.07640 1.45914 1.09746 1.01025 1.46556 1.73779 1.02574 1.14042 1.16316 1.20429 0.89335 0.92545 1.15990 1.20269 0.87473 0.80841 0.72328 1.90918 1.24646 1.77680 1.45700 1.84632 1.34727 1.17240 1.83002 1.18458 0.86904 0.93645 0.94290 1.21101 1.00608 1.03331 0.95684 1.21085 0.91327 0.95581 0.98325 1.20744 1.03680 1.05459 0.90907 1.19681 0.89555 0.93835 0.89198 1.83957 1.49224 1.58838 1.20351 1.21651 1.10794 1.25360 0.91807 0.89305 1.26521 0.94344 0.98464 1.01965 1.70149 1.13187 1.38625 1.32922 0.84742 0.79047 0.77814 0.75210 1.18140 1.18536 1.18671 1.21175 0.98144 1.07255 0.99924 1.21700 0.98161 0.91833 1.04692 1.22228 0.91312 0.92542 1.12995 1.20069 0.72028 0.81609 0.95663 1.93058 1.66566 1.73643 1.84187 1.92924 1.43810 1.96238 1.84435 0.86369 0.84799 0.87001 0.82795 0.80370 0.84706 0.91452 0.87183 0.80199 0.79689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.33 11.03 127.77 1.41 1.74 16 2 N -0.24 -4.14 3.70 -355.93 -1.32 -5.45 16 3 N -0.23 -5.93 11.99 -48.22 -0.58 -6.51 16 4 C -0.03 -0.90 7.17 42.42 0.30 -0.59 16 5 C 0.55 21.09 7.83 70.28 0.55 21.64 16 6 O -0.51 -22.44 16.40 19.84 0.33 -22.12 16 7 O -0.28 -11.30 10.04 -0.21 0.00 -11.30 16 8 C 0.11 4.64 5.19 22.49 0.12 4.75 16 9 C -0.19 -6.70 9.99 22.40 0.22 -6.47 16 10 C -0.05 -1.53 10.03 22.24 0.22 -1.30 16 11 C -0.19 -8.07 9.99 22.41 0.22 -7.84 16 12 C 0.13 6.77 6.65 22.56 0.15 6.92 16 13 O -0.22 -13.55 9.76 -22.78 -0.22 -13.77 16 14 C -0.42 -25.84 9.49 67.92 0.64 -25.20 16 15 H 0.09 5.25 5.20 -2.91 -0.02 5.23 16 16 C -0.01 -0.83 5.49 84.83 0.47 -0.37 16 17 N -0.91 -56.65 13.67 21.61 0.30 -56.35 16 18 Si 1.01 44.59 29.55 68.60 2.03 46.62 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 20 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 C -0.25 -12.32 8.59 22.49 0.19 -12.13 16 23 C -0.14 -3.20 10.41 22.42 0.23 -2.97 16 24 C -0.07 -1.06 6.66 41.40 0.28 -0.79 16 25 C 0.36 3.00 5.72 71.24 0.41 3.41 16 26 F -0.19 -2.62 17.06 44.97 0.77 -1.85 16 27 F -0.19 -1.55 14.49 44.97 0.65 -0.90 16 28 H 0.12 0.24 8.14 -2.38 -0.02 0.22 16 29 H 0.13 0.37 5.44 -2.39 -0.01 0.36 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 32 H 0.18 4.08 8.06 -2.91 -0.02 4.06 16 33 H 0.14 5.38 8.06 -2.91 -0.02 5.36 16 34 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 35 H 0.11 5.89 5.64 -2.91 -0.02 5.87 16 36 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 37 H 0.19 -0.10 8.14 -2.39 -0.02 -0.12 16 Total: -1.00 -85.09 343.44 8.52 -76.57 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.15 Total: 14.28 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 5.42 Total: -19.20 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -1.60 Total: -68.31 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: 0.10 Total: -47.20 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 1.42 Total: -2.76 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -85.09 8.52 -76.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460845782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.181 kcal (2) G-P(sol) polarization free energy of solvation -85.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds