Wall clock time and date at job start Tue Mar 31 2020 20:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00095 * 2 1 4 4 H 1.48496 * 109.47107 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46894 * 119.99869 * 3 2 1 6 6 H 1.48500 * 109.46917 * 240.00264 * 3 2 1 7 7 C 1.37881 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99537 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00401 * 0.02562 * 7 2 1 10 10 O 1.42899 * 112.94489 * 50.32802 * 9 7 2 11 11 C 1.53943 * 113.73912 * 278.73979 * 9 7 2 12 12 N 1.47806 * 86.03624 * 222.08318 * 11 9 7 13 13 C 1.34775 * 134.45934 * 204.63976 * 12 11 9 14 14 O 1.21590 * 120.00405 * 174.67111 * 13 12 11 15 15 C 1.47599 * 119.99812 * 354.67731 * 13 12 11 16 16 C 1.41543 * 120.50590 * 334.97469 * 15 13 12 17 17 N 1.30894 * 120.07601 * 179.77065 * 16 15 13 18 18 C 1.34162 * 121.16683 * 0.49697 * 17 16 15 19 19 C 1.38702 * 132.24875 * 179.73903 * 18 17 16 20 20 C 1.38848 * 107.67252 * 180.02562 * 19 18 17 21 21 N 1.31287 * 108.99138 * 359.97438 * 20 19 18 22 22 N 1.37265 * 120.89993 * 359.76324 * 18 17 16 23 23 C 1.36076 * 119.97288 * 359.97438 * 22 18 17 24 24 C 1.50704 * 120.55251 * 180.02562 * 23 22 18 25 25 F 1.39901 * 109.47122 * 119.97764 * 24 23 22 26 26 F 1.39905 * 109.46904 * 239.97763 * 24 23 22 27 27 C 1.47585 * 91.05076 * 24.54888 * 12 11 9 28 28 H 0.96998 * 119.99701 * 359.97438 * 1 2 3 29 29 H 0.96697 * 114.00063 * 309.67315 * 10 9 7 30 30 H 1.09007 * 113.77218 * 336.34807 * 11 9 7 31 31 H 1.08999 * 113.77100 * 107.74361 * 11 9 7 32 32 H 1.08003 * 119.96059 * 0.02562 * 16 15 13 33 33 H 1.07997 * 126.16639 * 0.03715 * 19 18 17 34 34 H 1.08003 * 125.50113 * 179.97438 * 20 19 18 35 35 H 1.09002 * 109.47205 * 359.97438 * 24 23 22 36 36 H 1.09002 * 113.76716 * 221.15072 * 27 12 11 37 37 H 1.09001 * 113.76580 * 89.75413 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 0.2453 -2.5610 -1.0150 11 6 0.7551 -2.9298 1.3906 12 7 1.1911 -4.2904 1.0122 13 6 0.8416 -5.5344 1.3953 14 8 1.3158 -6.5006 0.8296 15 6 -0.1169 -5.7239 2.5016 16 6 -0.2765 -4.7262 3.4928 17 7 -1.1322 -4.9011 4.4677 18 6 -1.8640 -6.0220 4.5566 19 6 -2.8150 -6.4447 5.4735 20 6 -3.2545 -7.7005 5.0765 21 7 -2.6220 -8.0474 3.9795 22 7 -1.7407 -7.0203 3.6225 23 6 -0.8673 -6.8796 2.5885 24 6 -0.7218 -7.9671 1.5553 25 9 -1.0445 -7.4573 0.2931 26 9 0.5986 -8.4295 1.5478 27 6 2.1607 -3.7402 0.0451 28 1 -0.4849 0.8401 0.0004 29 1 -0.3467 -1.7965 -1.0287 30 1 1.3258 -2.4984 2.2131 31 1 -0.3226 -2.8333 1.5225 32 1 0.3054 -3.8178 3.4423 33 1 -3.1529 -5.8958 6.3401 34 1 -3.9968 -8.2957 5.5875 35 1 -1.3938 -8.7905 1.7973 36 1 2.2031 -4.2896 -0.8954 37 1 3.1452 -3.5474 0.4714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001472547879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:45 Heat of formation + Delta-G solvation = -7.129880 kcal Electronic energy + Delta-G solvation = -29832.868316 eV Core-core repulsion = 25250.614313 eV Total energy + Delta-G solvation = -4582.254003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.99635 -46.95655 -42.64027 -39.93239 -38.27649 -37.31830 -34.79779 -34.09183 -32.31001 -31.72026 -29.61267 -28.99837 -27.56810 -25.61560 -25.51104 -24.09160 -23.74719 -21.35946 -20.61587 -19.12166 -18.93419 -17.98002 -17.45141 -17.39432 -16.99871 -16.89736 -16.25418 -16.07570 -15.60413 -15.10260 -14.78573 -14.60552 -14.47138 -14.18759 -13.84219 -13.42221 -13.37151 -13.23829 -12.90182 -12.85610 -12.71804 -12.54463 -12.13709 -11.69224 -11.63510 -11.58881 -11.53884 -11.21142 -11.10010 -10.61742 -10.42773 -10.35355 -9.86632 -9.74424 -9.38828 -8.85424 -8.58961 -8.29826 -8.04162 -6.47374 -4.58585 -0.10866 0.36852 1.46874 2.16809 2.80677 2.85732 3.12088 3.17387 3.19040 3.23564 3.36286 3.57113 3.78593 3.91628 4.12589 4.32463 4.49485 4.69420 4.75161 4.78380 4.84784 4.89927 5.07582 5.43583 5.49603 5.65845 5.78228 5.89638 6.00418 6.12163 6.22577 6.25561 6.41463 6.50623 6.95301 6.99298 7.24648 7.54841 7.70982 8.14699 8.37597 8.45241 9.13193 9.32845 10.59444 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.003700 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.914226 B = 7566.523348 C = 8642.014844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.243 3.757 10 O -0.570 6.570 11 C 0.064 3.936 12 N -0.620 5.620 13 C 0.576 3.424 14 O -0.527 6.527 15 C -0.173 4.173 16 C 0.209 3.791 17 N -0.448 5.448 18 C 0.262 3.738 19 C -0.256 4.256 20 C 0.099 3.901 21 N -0.315 5.315 22 N -0.302 5.302 23 C 0.157 3.843 24 C 0.331 3.669 25 F -0.175 7.175 26 F -0.160 7.160 27 C 0.118 3.882 28 H 0.275 0.725 29 H 0.393 0.607 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.195 0.805 33 H 0.169 0.831 34 H 0.205 0.795 35 H 0.132 0.868 36 H 0.076 0.924 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 -10.053 9.466 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.091 0.909 9 C 0.201 3.799 10 O -0.382 6.382 11 C -0.058 4.058 12 N -0.353 5.353 13 C 0.362 3.638 14 O -0.406 6.406 15 C -0.183 4.183 16 C 0.023 3.977 17 N -0.158 5.158 18 C 0.036 3.964 19 C -0.287 4.287 20 C -0.079 4.079 21 N -0.139 5.139 22 N -0.073 5.073 23 C 0.036 3.964 24 C 0.276 3.724 25 F -0.156 7.156 26 F -0.140 7.140 27 C -0.003 4.003 28 H 0.085 0.915 29 H 0.247 0.753 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.212 0.788 33 H 0.186 0.814 34 H 0.221 0.779 35 H 0.149 0.851 36 H 0.095 0.905 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.574 -11.646 8.978 15.400 hybrid contribution 0.067 1.624 0.331 1.659 sum -4.507 -10.022 9.309 14.402 Atomic orbital electron populations 1.69385 1.06194 1.28475 1.49567 1.25067 0.95017 0.99918 0.92891 0.86379 0.79511 0.81566 0.79048 1.21000 1.19822 1.19817 1.21436 0.93956 0.89733 1.52728 0.90895 1.19778 0.85649 0.91279 0.83177 1.86083 1.47069 1.49921 1.55140 1.24643 1.00401 0.77132 1.03663 1.50086 1.39966 1.03949 1.41256 1.16964 0.81647 0.83158 0.82015 1.90895 1.56050 1.38366 1.55271 1.20947 1.01725 0.94350 1.01302 1.23964 0.90687 0.97257 0.85759 1.68204 1.06646 1.17488 1.23449 1.20964 0.98300 0.85708 0.91417 1.21066 1.04226 0.98764 1.04626 1.23952 0.96970 0.94951 0.92074 1.77837 1.08672 1.08096 1.19254 1.46825 1.26912 1.15835 1.17704 1.21509 0.89077 0.96754 0.89033 1.19888 0.82912 0.91142 0.78436 1.93109 1.92444 1.88750 1.41281 1.93158 1.36357 1.88399 1.96129 1.23565 0.93074 0.92372 0.91298 0.91499 0.75254 0.89156 0.90873 0.78795 0.81359 0.77891 0.85135 0.90522 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.55 11.20 55.43 0.62 -20.93 16 2 C 0.07 1.74 5.39 -17.82 -0.10 1.65 16 3 Si 0.91 18.53 29.54 -169.99 -5.02 13.51 16 4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.54 -12.61 8.61 -34.44 -0.30 -12.91 16 8 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.24 5.38 1.40 -90.85 -0.13 5.26 16 10 O -0.57 -13.93 13.48 -35.23 -0.48 -14.41 16 11 C 0.06 1.22 5.71 -2.84 -0.02 1.21 16 12 N -0.62 -11.99 3.58 -179.34 -0.64 -12.63 16 13 C 0.58 11.13 7.32 -12.44 -0.09 11.03 16 14 O -0.53 -11.31 12.97 5.29 0.07 -11.24 16 15 C -0.17 -2.91 5.80 -104.88 -0.61 -3.52 16 16 C 0.21 3.14 10.08 -16.69 -0.17 2.98 16 17 N -0.45 -6.76 10.45 -11.91 -0.12 -6.89 16 18 C 0.26 3.82 7.91 -155.32 -1.23 2.59 16 19 C -0.26 -2.88 10.91 -39.18 -0.43 -3.31 16 20 C 0.10 0.97 11.95 -17.56 -0.21 0.76 16 21 N -0.31 -4.08 12.17 30.49 0.37 -3.71 16 22 N -0.30 -4.52 3.88 -7.99 -0.03 -4.55 16 23 C 0.16 2.51 6.41 -80.77 -0.52 2.00 16 24 C 0.33 5.11 5.02 36.01 0.18 5.29 16 25 F -0.17 -3.09 15.95 2.25 0.04 -3.05 16 26 F -0.16 -2.75 14.40 2.25 0.03 -2.72 16 27 C 0.12 2.35 8.23 -2.97 -0.02 2.32 16 28 H 0.27 6.35 8.31 -40.82 -0.34 6.02 16 29 H 0.39 9.71 6.60 45.56 0.30 10.01 16 30 H 0.09 1.56 7.71 -51.92 -0.40 1.16 16 31 H 0.07 1.42 7.87 -51.93 -0.41 1.02 16 32 H 0.20 2.62 5.63 -52.48 -0.30 2.32 16 33 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.20 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.13 1.59 7.69 -51.93 -0.40 1.19 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 LS Contribution 327.67 15.07 4.94 4.94 Total: -1.00 -28.88 327.67 -6.30 -35.18 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -2.44 Total: 11.17 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: -3.63 Total: 15.35 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.19 Total: -48.71 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.41 Total: -25.65 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.07 Total: -5.77 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.88 -6.30 -35.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472547879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.045 kcal (2) G-P(sol) polarization free energy of solvation -28.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds