Wall clock time and date at job start Tue Mar 31 2020 20:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00095 * 2 1 4 4 H 1.48496 * 109.47107 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46894 * 119.99869 * 3 2 1 6 6 H 1.48500 * 109.46917 * 240.00264 * 3 2 1 7 7 C 1.37881 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99537 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00401 * 0.02562 * 7 2 1 10 10 O 1.42899 * 112.94489 * 50.32802 * 9 7 2 11 11 C 1.53943 * 113.73912 * 278.73979 * 9 7 2 12 12 N 1.47806 * 86.03624 * 222.08318 * 11 9 7 13 13 C 1.34775 * 134.45934 * 204.63976 * 12 11 9 14 14 O 1.21590 * 120.00405 * 174.67111 * 13 12 11 15 15 C 1.47599 * 119.99812 * 354.67731 * 13 12 11 16 16 C 1.41543 * 120.50590 * 334.97469 * 15 13 12 17 17 N 1.30894 * 120.07601 * 179.77065 * 16 15 13 18 18 C 1.34162 * 121.16683 * 0.49697 * 17 16 15 19 19 C 1.38702 * 132.24875 * 179.73903 * 18 17 16 20 20 C 1.38848 * 107.67252 * 180.02562 * 19 18 17 21 21 N 1.31287 * 108.99138 * 359.97438 * 20 19 18 22 22 N 1.37265 * 120.89993 * 359.76324 * 18 17 16 23 23 C 1.36076 * 119.97288 * 359.97438 * 22 18 17 24 24 C 1.50704 * 120.55251 * 180.02562 * 23 22 18 25 25 F 1.39901 * 109.47122 * 119.97764 * 24 23 22 26 26 F 1.39905 * 109.46904 * 239.97763 * 24 23 22 27 27 C 1.47585 * 91.05076 * 24.54888 * 12 11 9 28 28 H 0.96998 * 119.99701 * 359.97438 * 1 2 3 29 29 H 0.96697 * 114.00063 * 309.67315 * 10 9 7 30 30 H 1.09007 * 113.77218 * 336.34807 * 11 9 7 31 31 H 1.08999 * 113.77100 * 107.74361 * 11 9 7 32 32 H 1.08003 * 119.96059 * 0.02562 * 16 15 13 33 33 H 1.07997 * 126.16639 * 0.03715 * 19 18 17 34 34 H 1.08003 * 125.50113 * 179.97438 * 20 19 18 35 35 H 1.09002 * 109.47205 * 359.97438 * 24 23 22 36 36 H 1.09002 * 113.76716 * 221.15072 * 27 12 11 37 37 H 1.09001 * 113.76580 * 89.75413 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 0.2453 -2.5610 -1.0150 11 6 0.7551 -2.9298 1.3906 12 7 1.1911 -4.2904 1.0122 13 6 0.8416 -5.5344 1.3953 14 8 1.3158 -6.5006 0.8296 15 6 -0.1169 -5.7239 2.5016 16 6 -0.2765 -4.7262 3.4928 17 7 -1.1322 -4.9011 4.4677 18 6 -1.8640 -6.0220 4.5566 19 6 -2.8150 -6.4447 5.4735 20 6 -3.2545 -7.7005 5.0765 21 7 -2.6220 -8.0474 3.9795 22 7 -1.7407 -7.0203 3.6225 23 6 -0.8673 -6.8796 2.5885 24 6 -0.7218 -7.9671 1.5553 25 9 -1.0445 -7.4573 0.2931 26 9 0.5986 -8.4295 1.5478 27 6 2.1607 -3.7402 0.0451 28 1 -0.4849 0.8401 0.0004 29 1 -0.3467 -1.7965 -1.0287 30 1 1.3258 -2.4984 2.2131 31 1 -0.3226 -2.8333 1.5225 32 1 0.3054 -3.8178 3.4423 33 1 -3.1529 -5.8958 6.3401 34 1 -3.9968 -8.2957 5.5875 35 1 -1.3938 -8.7905 1.7973 36 1 2.2031 -4.2896 -0.8954 37 1 3.1452 -3.5474 0.4714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001472547879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:45 Heat of formation + Delta-G solvation = -27.005710 kcal Electronic energy + Delta-G solvation = -29833.730197 eV Core-core repulsion = 25250.614313 eV Total energy + Delta-G solvation = -4583.115884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.28528 -48.26334 -43.67013 -41.41894 -39.59061 -38.71667 -36.01221 -35.74215 -34.13152 -32.88513 -30.66362 -30.44467 -28.87720 -27.17646 -27.13187 -25.22773 -24.87524 -22.44483 -22.08315 -20.46123 -20.24830 -19.40111 -18.97343 -18.65548 -18.27025 -18.19817 -17.49804 -17.27532 -17.15916 -16.70127 -16.30781 -15.95967 -15.62979 -15.31899 -15.25919 -14.90297 -14.59079 -14.48942 -14.32006 -14.20557 -14.07723 -13.90253 -13.72876 -13.38851 -12.92224 -12.77190 -12.74701 -12.63893 -12.63437 -12.25070 -12.19698 -11.69024 -11.28287 -10.96893 -10.89563 -10.62784 -10.29234 -9.68235 -9.26930 -8.24491 -6.41268 -1.27418 -0.71491 0.39436 1.20016 1.51188 1.52513 1.57099 1.61115 1.65899 1.88890 2.09841 2.43203 2.53971 2.68707 2.76759 2.97150 3.05982 3.39814 3.55035 3.55565 3.72688 3.76193 3.91186 4.12109 4.20871 4.43034 4.52839 4.60814 4.69640 4.80459 4.82951 4.87692 4.95647 5.22666 5.31716 5.75060 5.93984 6.05609 6.16020 6.61962 6.65208 6.86267 7.32269 7.44852 8.81317 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.003700 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.914226 B = 7566.523348 C = 8642.014844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.037 3.963 3 Si 0.965 3.035 4 H -0.287 1.287 5 H -0.265 1.265 6 H -0.277 1.277 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.220 3.780 10 O -0.587 6.587 11 C 0.082 3.918 12 N -0.621 5.621 13 C 0.576 3.424 14 O -0.555 6.555 15 C -0.195 4.195 16 C 0.207 3.793 17 N -0.452 5.452 18 C 0.222 3.778 19 C -0.238 4.238 20 C 0.119 3.881 21 N -0.329 5.329 22 N -0.315 5.315 23 C 0.160 3.840 24 C 0.327 3.673 25 F -0.192 7.192 26 F -0.173 7.173 27 C 0.120 3.880 28 H 0.275 0.725 29 H 0.387 0.613 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.204 0.796 33 H 0.198 0.802 34 H 0.258 0.742 35 H 0.166 0.834 36 H 0.063 0.937 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 -10.473 11.797 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.164 4.164 3 Si 0.791 3.209 4 H -0.212 1.212 5 H -0.190 1.190 6 H -0.202 1.202 7 C -0.592 4.592 8 H 0.095 0.905 9 C 0.179 3.821 10 O -0.399 6.399 11 C -0.040 4.040 12 N -0.353 5.353 13 C 0.364 3.636 14 O -0.436 6.436 15 C -0.206 4.206 16 C 0.021 3.979 17 N -0.162 5.162 18 C -0.001 4.001 19 C -0.267 4.267 20 C -0.060 4.060 21 N -0.153 5.153 22 N -0.086 5.086 23 C 0.039 3.961 24 C 0.273 3.727 25 F -0.173 7.173 26 F -0.153 7.153 27 C -0.002 4.002 28 H 0.085 0.915 29 H 0.241 0.759 30 H 0.129 0.871 31 H 0.085 0.915 32 H 0.220 0.780 33 H 0.215 0.785 34 H 0.273 0.727 35 H 0.182 0.818 36 H 0.081 0.919 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.637 -12.069 11.334 17.490 hybrid contribution 0.242 1.630 -0.296 1.674 sum -5.395 -10.439 11.038 16.122 Atomic orbital electron populations 1.69461 1.07119 1.28945 1.50085 1.25695 0.95646 1.02432 0.92676 0.85488 0.78274 0.78238 0.78927 1.21215 1.18984 1.20237 1.21684 0.94304 0.90422 1.52797 0.90513 1.20102 0.85885 0.91951 0.84205 1.86072 1.47585 1.49715 1.56507 1.24452 1.00271 0.76777 1.02530 1.50031 1.39904 1.04216 1.41176 1.17267 0.81619 0.82518 0.82222 1.90867 1.57178 1.39015 1.56543 1.20670 1.02653 0.95828 1.01404 1.23968 0.91171 0.97199 0.85606 1.68184 1.06657 1.18069 1.23242 1.21548 0.99863 0.85994 0.92697 1.21662 1.02012 0.98982 1.04086 1.24895 0.96168 0.94485 0.90437 1.77855 1.08697 1.08023 1.20682 1.46936 1.27440 1.16572 1.17641 1.21495 0.88971 0.96320 0.89334 1.20307 0.82779 0.92039 0.77623 1.93066 1.92510 1.89127 1.42567 1.93121 1.37576 1.88513 1.96129 1.23581 0.93965 0.91285 0.91335 0.91537 0.75864 0.87059 0.91459 0.77955 0.78500 0.72668 0.81763 0.91855 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.20 11.20 21.45 0.24 -43.96 16 2 C 0.04 1.70 5.39 84.66 0.46 2.16 16 3 Si 0.97 37.58 29.54 68.60 2.03 39.60 16 4 H -0.29 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 6 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.55 -25.77 8.61 25.60 0.22 -25.55 16 8 H 0.08 3.42 7.81 -2.91 -0.02 3.40 16 9 C 0.22 9.84 1.40 -10.88 -0.02 9.83 16 10 O -0.59 -29.50 13.48 -148.98 -2.01 -31.50 16 11 C 0.08 3.14 5.71 86.44 0.49 3.63 16 12 N -0.62 -24.34 3.58 -843.41 -3.02 -27.36 16 13 C 0.58 22.73 7.32 86.71 0.64 23.36 16 14 O -0.56 -24.50 12.97 -4.00 -0.05 -24.55 16 15 C -0.20 -6.63 5.80 -20.03 -0.12 -6.74 16 16 C 0.21 6.21 10.08 85.65 0.86 7.07 16 17 N -0.45 -13.21 10.45 -191.60 -2.00 -15.22 16 18 C 0.22 6.07 7.91 133.01 1.05 7.12 16 19 C -0.24 -4.43 10.91 22.53 0.25 -4.18 16 20 C 0.12 1.79 11.95 84.92 1.01 2.80 16 21 N -0.33 -7.58 12.17 -57.45 -0.70 -8.28 16 22 N -0.32 -8.95 3.88 -179.18 -0.70 -9.65 16 23 C 0.16 5.10 6.41 41.86 0.27 5.37 16 24 C 0.33 10.08 5.02 71.24 0.36 10.44 16 25 F -0.19 -6.91 15.95 44.97 0.72 -6.19 16 26 F -0.17 -6.04 14.40 44.97 0.65 -5.39 16 27 C 0.12 4.82 8.23 86.48 0.71 5.53 16 28 H 0.27 12.73 8.31 -92.71 -0.77 11.96 16 29 H 0.39 19.77 6.60 -74.06 -0.49 19.28 16 30 H 0.11 3.77 7.71 -2.38 -0.02 3.75 16 31 H 0.07 2.65 7.87 -2.39 -0.02 2.64 16 32 H 0.20 5.43 5.63 -2.91 -0.02 5.42 16 33 H 0.20 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.26 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.17 3.83 7.69 -2.39 -0.02 3.81 16 36 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.12 4.05 8.09 -2.39 -0.02 4.03 16 Total: -1.00 -63.29 327.67 2.02 -61.27 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.68 Total: 30.40 kcal Atomic # 6 Polarization: 34.65 SS G_CDS: 6.19 Total: 40.83 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -6.18 Total: -104.47 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -2.06 Total: -56.06 kcal Atomic # 9 Polarization: -12.95 SS G_CDS: 1.36 Total: -11.59 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.60 kcal Total: -63.29 2.02 -61.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472547879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.263 kcal (2) G-P(sol) polarization free energy of solvation -63.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds