Wall clock time and date at job start Tue Mar 31 2020 20:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00229 * 2 1 4 4 H 1.48497 * 109.47193 * 265.17640 * 3 2 1 5 5 H 1.48507 * 109.46768 * 25.16878 * 3 2 1 6 6 H 1.48491 * 109.47168 * 145.17097 * 3 2 1 7 7 C 1.37874 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00080 * 354.10613 * 7 2 1 9 9 C 1.50703 * 120.00389 * 174.10956 * 7 2 1 10 10 H 1.09003 * 109.46488 * 56.81351 * 9 7 2 11 11 N 1.46493 * 109.46698 * 296.81717 * 9 7 2 12 12 C 1.34782 * 119.99772 * 154.99689 * 11 9 7 13 13 O 1.21583 * 119.99929 * 359.97438 * 12 11 9 14 14 N 1.34783 * 119.99934 * 179.97438 * 12 11 9 15 15 C 1.46492 * 119.99823 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47212 * 179.97438 * 15 14 12 17 17 N 1.46493 * 109.47253 * 179.97438 * 16 15 14 18 18 C 1.34766 * 124.18349 * 269.72507 * 17 16 15 19 19 O 1.21245 * 127.15380 * 0.02562 * 18 17 16 20 20 C 1.51582 * 105.68924 * 179.97438 * 18 17 16 21 21 N 1.47305 * 103.58970 * 0.32439 * 20 18 17 22 22 C 1.33798 * 124.17596 * 90.02520 * 17 16 15 23 23 O 1.21531 * 123.76838 * 359.96850 * 22 17 16 24 24 C 1.52996 * 109.47448 * 176.81540 * 9 7 2 25 25 F 1.39901 * 109.47073 * 65.23167 * 24 9 7 26 26 F 1.39893 * 109.47146 * 185.23536 * 24 9 7 27 27 F 1.39906 * 109.47073 * 305.23747 * 24 9 7 28 28 H 0.96996 * 119.99988 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00730 * 334.99684 * 11 9 7 30 30 H 0.97002 * 120.00044 * 0.02562 * 14 12 11 31 31 H 1.08999 * 109.47222 * 299.99564 * 15 14 12 32 32 H 1.08999 * 109.47467 * 59.99755 * 15 14 12 33 33 H 1.08991 * 109.47127 * 300.00264 * 16 15 14 34 34 H 1.09007 * 109.46811 * 59.99996 * 16 15 14 35 35 H 1.09001 * 110.76731 * 241.71646 * 20 18 17 36 36 H 1.09003 * 110.56306 * 118.83427 * 20 18 17 37 37 H 0.97010 * 126.68863 * 179.76945 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5987 1.9875 -1.3951 5 1 1.3992 2.6800 0.5955 6 1 3.4919 1.4717 0.7996 7 6 2.0045 -1.1940 -0.0005 8 1 1.4688 -2.1270 0.0951 9 6 3.5056 -1.1975 -0.1345 10 1 3.9426 -0.5928 0.6602 11 7 3.8809 -0.6390 -1.4357 12 6 5.0941 -0.0762 -1.6029 13 8 5.8768 -0.0317 -0.6735 14 7 5.4397 0.4371 -2.8002 15 6 6.7586 1.0483 -2.9820 16 6 6.8953 1.5476 -4.4218 17 7 8.2139 2.1593 -4.6035 18 6 8.4774 3.4651 -4.3993 19 8 7.6976 4.3226 -4.0437 20 6 9.9519 3.6385 -4.7054 21 7 10.3871 2.2846 -5.0896 22 6 9.3042 1.4917 -4.9981 23 8 9.3146 0.3024 -5.2478 24 6 4.0239 -2.6330 -0.0268 25 9 3.5582 -3.3797 -1.1143 26 9 5.4228 -2.6251 -0.0313 27 9 3.5646 -3.2066 1.1637 28 1 -0.4850 0.8400 -0.0004 29 1 3.2564 -0.6742 -2.1771 30 1 4.8151 0.4019 -3.5416 31 1 6.8683 1.8870 -2.2944 32 1 7.5330 0.3086 -2.7793 33 1 6.7857 0.7088 -5.1091 34 1 6.1208 2.2873 -4.6250 35 1 10.4925 3.9790 -3.8223 36 1 10.0919 4.3353 -5.5318 37 1 11.2806 2.0169 -5.3564 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477100976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:04 Heat of formation + Delta-G solvation = -218.438689 kcal Electronic energy + Delta-G solvation = -30026.873415 eV Core-core repulsion = 25004.687149 eV Total energy + Delta-G solvation = -5022.186265 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.03646 -46.54061 -46.53016 -42.70642 -39.48493 -38.94737 -36.47937 -36.24892 -34.88254 -33.92854 -32.47167 -30.09952 -28.51307 -27.86714 -24.98213 -23.98881 -23.25222 -21.45789 -20.92703 -20.29973 -18.61996 -18.31288 -17.80549 -17.50449 -17.42410 -17.01446 -16.81619 -16.40263 -16.02486 -15.69283 -15.52486 -15.17582 -14.59004 -14.53876 -14.28601 -14.24591 -13.80564 -13.70811 -13.45338 -13.41294 -12.99278 -12.97978 -12.73890 -12.72324 -12.63607 -12.48040 -11.90982 -11.63648 -11.37536 -11.14259 -10.66767 -10.63093 -10.24346 -10.17737 -9.96015 -9.90824 -9.70160 -8.99408 -8.91652 -8.34390 -6.50939 -4.64075 1.22208 1.69669 2.57797 2.67831 3.04548 3.18128 3.23465 3.34388 3.55999 3.61127 3.97606 4.13266 4.31465 4.49110 4.54635 4.57751 4.65952 5.00176 5.03961 5.04489 5.08352 5.16125 5.25292 5.44871 5.67584 5.80899 6.29292 6.39636 6.60964 6.63662 6.89109 6.94776 7.12544 7.38766 7.69905 7.91536 8.52612 8.56744 9.03071 9.10108 10.57191 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.015405 B = 0.003337 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.201622 B = 8387.981000 C = 9632.826297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.097 3.903 3 Si 0.881 3.119 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.536 4.536 8 H 0.096 0.904 9 C 0.220 3.780 10 H 0.091 0.909 11 N -0.730 5.730 12 C 0.694 3.306 13 O -0.587 6.587 14 N -0.750 5.750 15 C 0.127 3.873 16 C 0.108 3.892 17 N -0.573 5.573 18 C 0.519 3.481 19 O -0.462 6.462 20 C 0.064 3.936 21 N -0.729 5.729 22 C 0.701 3.299 23 O -0.535 6.535 24 C 0.441 3.559 25 F -0.190 7.190 26 F -0.192 7.192 27 F -0.185 7.185 28 H 0.275 0.725 29 H 0.398 0.602 30 H 0.396 0.604 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.283 7.939 -12.538 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.112 4.112 3 Si 0.708 3.292 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.183 1.183 7 C -0.574 4.574 8 H 0.114 0.886 9 C 0.116 3.884 10 H 0.109 0.891 11 N -0.386 5.386 12 C 0.394 3.606 13 O -0.464 6.464 14 N -0.408 5.408 15 C 0.001 3.999 16 C -0.013 4.013 17 N -0.320 5.320 18 C 0.306 3.694 19 O -0.330 6.330 20 C -0.064 4.064 21 N -0.395 5.395 22 C 0.401 3.599 23 O -0.407 6.407 24 C 0.385 3.615 25 F -0.172 7.172 26 F -0.174 7.174 27 F -0.166 7.166 28 H 0.085 0.915 29 H 0.234 0.766 30 H 0.230 0.770 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 17.300 7.854 -11.562 22.240 hybrid contribution 0.290 0.542 -0.847 1.046 sum 17.589 8.396 -12.408 23.105 Atomic orbital electron populations 1.69878 1.06404 1.28304 1.44954 1.24908 0.94749 0.99279 0.92296 0.86743 0.80442 0.82455 0.79569 1.19695 1.21344 1.18253 1.20833 0.86599 0.96552 1.53438 0.88643 1.20132 0.98351 0.84954 0.84961 0.89138 1.46822 1.14518 1.61582 1.15672 1.16349 0.83122 0.78472 0.82644 1.90899 1.51549 1.63771 1.40196 1.44930 1.17484 1.65541 1.12849 1.21293 0.85630 0.98385 0.94592 1.21815 0.81171 1.00070 0.98284 1.46200 1.11627 1.11103 1.63070 1.20959 0.90725 0.81829 0.75908 1.90876 1.54396 1.45461 1.42293 1.22473 0.92536 0.86751 1.04656 1.45413 1.12001 1.08839 1.73241 1.15871 0.80804 0.85179 0.78048 1.91062 1.83812 1.11879 1.53991 1.21538 0.74664 0.92262 0.73044 1.93078 1.88625 1.79727 1.55787 1.93151 1.30900 1.97129 1.96207 1.93105 1.88843 1.86807 1.47892 0.91542 0.76592 0.77026 0.91366 0.90910 0.87611 0.87871 0.85673 0.85795 0.71340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.67 13.96 55.43 0.77 -22.90 16 2 C 0.10 2.53 5.46 -17.82 -0.10 2.43 16 3 Si 0.88 20.57 26.12 -169.99 -4.44 16.13 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.26 -6.31 6.55 56.52 0.37 -5.94 16 7 C -0.54 -13.80 8.64 -34.44 -0.30 -14.10 16 8 H 0.10 2.67 7.91 -52.48 -0.42 2.26 16 9 C 0.22 5.14 1.41 -69.09 -0.10 5.05 16 10 H 0.09 2.27 6.29 -51.93 -0.33 1.94 16 11 N -0.73 -15.08 3.20 -59.81 -0.19 -15.27 16 12 C 0.69 14.08 7.95 -86.91 -0.69 13.39 16 13 O -0.59 -13.95 14.91 5.29 0.08 -13.87 16 14 N -0.75 -11.48 5.56 -65.23 -0.36 -11.85 16 15 C 0.13 1.74 6.00 -4.04 -0.02 1.71 16 16 C 0.11 1.09 5.82 -4.04 -0.02 1.06 16 17 N -0.57 -5.42 2.60 -120.73 -0.31 -5.73 16 18 C 0.52 4.38 8.32 -10.56 -0.09 4.29 16 19 O -0.46 -5.45 17.75 5.59 0.10 -5.35 16 20 C 0.06 0.23 7.97 -4.32 -0.03 0.20 16 21 N -0.73 -3.75 6.58 -65.74 -0.43 -4.18 16 22 C 0.70 6.81 8.62 -88.02 -0.76 6.05 16 23 O -0.54 -7.31 17.48 5.34 0.09 -7.22 16 24 C 0.44 9.97 2.79 37.16 0.10 10.07 16 25 F -0.19 -4.17 16.97 2.25 0.04 -4.13 16 26 F -0.19 -4.38 15.84 2.25 0.04 -4.35 16 27 F -0.18 -4.20 16.83 2.25 0.04 -4.17 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.40 7.42 8.61 -40.82 -0.35 7.07 16 30 H 0.40 4.76 8.49 -40.82 -0.35 4.42 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.11 0.98 7.86 -51.93 -0.41 0.57 16 34 H 0.10 0.93 8.00 -51.92 -0.42 0.51 16 35 H 0.13 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.12 0.12 8.14 -51.93 -0.42 -0.30 16 37 H 0.44 1.20 8.96 -40.82 -0.37 0.83 16 LS Contribution 338.57 15.07 5.10 5.10 Total: -1.00 -35.43 338.57 -4.98 -40.41 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.49 Total: 7.22 kcal Atomic # 6 Polarization: 32.16 SS G_CDS: -2.01 Total: 30.15 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.53 Total: -59.92 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: 0.27 Total: -26.44 kcal Atomic # 9 Polarization: -12.76 SS G_CDS: 0.11 Total: -12.64 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.44 Total: 16.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.43 -4.98 -40.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477100976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.031 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds