Wall clock time and date at job start Tue Mar 31 2020 20:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00229 * 2 1 4 4 H 1.48497 * 109.47193 * 265.17640 * 3 2 1 5 5 H 1.48507 * 109.46768 * 25.16878 * 3 2 1 6 6 H 1.48491 * 109.47168 * 145.17097 * 3 2 1 7 7 C 1.37874 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00080 * 354.10613 * 7 2 1 9 9 C 1.50703 * 120.00389 * 174.10956 * 7 2 1 10 10 H 1.09003 * 109.46488 * 56.81351 * 9 7 2 11 11 N 1.46493 * 109.46698 * 296.81717 * 9 7 2 12 12 C 1.34782 * 119.99772 * 154.99689 * 11 9 7 13 13 O 1.21583 * 119.99929 * 359.97438 * 12 11 9 14 14 N 1.34783 * 119.99934 * 179.97438 * 12 11 9 15 15 C 1.46492 * 119.99823 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47212 * 179.97438 * 15 14 12 17 17 N 1.46493 * 109.47253 * 179.97438 * 16 15 14 18 18 C 1.34766 * 124.18349 * 269.72507 * 17 16 15 19 19 O 1.21245 * 127.15380 * 0.02562 * 18 17 16 20 20 C 1.51582 * 105.68924 * 179.97438 * 18 17 16 21 21 N 1.47305 * 103.58970 * 0.32439 * 20 18 17 22 22 C 1.33798 * 124.17596 * 90.02520 * 17 16 15 23 23 O 1.21531 * 123.76838 * 359.96850 * 22 17 16 24 24 C 1.52996 * 109.47448 * 176.81540 * 9 7 2 25 25 F 1.39901 * 109.47073 * 65.23167 * 24 9 7 26 26 F 1.39893 * 109.47146 * 185.23536 * 24 9 7 27 27 F 1.39906 * 109.47073 * 305.23747 * 24 9 7 28 28 H 0.96996 * 119.99988 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00730 * 334.99684 * 11 9 7 30 30 H 0.97002 * 120.00044 * 0.02562 * 14 12 11 31 31 H 1.08999 * 109.47222 * 299.99564 * 15 14 12 32 32 H 1.08999 * 109.47467 * 59.99755 * 15 14 12 33 33 H 1.08991 * 109.47127 * 300.00264 * 16 15 14 34 34 H 1.09007 * 109.46811 * 59.99996 * 16 15 14 35 35 H 1.09001 * 110.76731 * 241.71646 * 20 18 17 36 36 H 1.09003 * 110.56306 * 118.83427 * 20 18 17 37 37 H 0.97010 * 126.68863 * 179.76945 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5987 1.9875 -1.3951 5 1 1.3992 2.6800 0.5955 6 1 3.4919 1.4717 0.7996 7 6 2.0045 -1.1940 -0.0005 8 1 1.4688 -2.1270 0.0951 9 6 3.5056 -1.1975 -0.1345 10 1 3.9426 -0.5928 0.6602 11 7 3.8809 -0.6390 -1.4357 12 6 5.0941 -0.0762 -1.6029 13 8 5.8768 -0.0317 -0.6735 14 7 5.4397 0.4371 -2.8002 15 6 6.7586 1.0483 -2.9820 16 6 6.8953 1.5476 -4.4218 17 7 8.2139 2.1593 -4.6035 18 6 8.4774 3.4651 -4.3993 19 8 7.6976 4.3226 -4.0437 20 6 9.9519 3.6385 -4.7054 21 7 10.3871 2.2846 -5.0896 22 6 9.3042 1.4917 -4.9981 23 8 9.3146 0.3024 -5.2478 24 6 4.0239 -2.6330 -0.0268 25 9 3.5582 -3.3797 -1.1143 26 9 5.4228 -2.6251 -0.0313 27 9 3.5646 -3.2066 1.1637 28 1 -0.4850 0.8400 -0.0004 29 1 3.2564 -0.6742 -2.1771 30 1 4.8151 0.4019 -3.5416 31 1 6.8683 1.8870 -2.2944 32 1 7.5330 0.3086 -2.7793 33 1 6.7857 0.7088 -5.1091 34 1 6.1208 2.2873 -4.6250 35 1 10.4925 3.9790 -3.8223 36 1 10.0919 4.3353 -5.5318 37 1 11.2806 2.0169 -5.3564 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477100976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:03 Heat of formation + Delta-G solvation = -248.300328 kcal Electronic energy + Delta-G solvation = -30028.168312 eV Core-core repulsion = 25004.687149 eV Total energy + Delta-G solvation = -5023.481163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.88475 -48.39382 -48.36624 -43.36731 -41.09772 -39.70147 -37.41965 -37.22471 -36.49503 -35.10244 -34.40636 -31.52018 -29.77623 -28.51163 -26.94701 -25.04075 -23.91055 -23.22352 -22.12828 -21.47642 -20.27738 -19.48593 -19.25044 -18.93781 -18.71906 -18.34552 -18.23857 -17.72002 -17.27537 -16.71462 -16.52194 -16.29033 -16.07785 -15.61301 -15.33630 -15.29883 -15.24969 -15.10859 -14.97973 -14.84199 -14.81632 -14.59150 -14.56961 -14.49843 -14.33454 -13.68867 -13.45388 -13.02611 -12.77196 -12.51527 -12.17500 -12.09670 -11.89486 -11.51833 -11.37643 -11.06882 -10.98809 -10.47415 -10.43451 -9.95473 -8.54152 -6.71485 0.58599 0.96061 1.24295 1.33274 1.44763 1.64772 1.86941 1.91654 2.14989 2.23684 2.26984 2.81987 3.03229 3.15332 3.24709 3.38291 3.60168 3.64674 3.67782 4.14891 4.18554 4.31764 4.32805 4.47634 4.52363 4.72535 4.77529 4.93704 5.31237 5.38297 5.81580 5.82213 5.98160 6.02049 6.33804 6.42638 6.99145 7.03689 7.07301 7.49432 8.58106 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.015405 B = 0.003337 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.201622 B = 8387.981000 C = 9632.826297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.067 3.933 3 Si 0.930 3.070 4 H -0.249 1.249 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.230 3.770 10 H 0.075 0.925 11 N -0.727 5.727 12 C 0.691 3.309 13 O -0.622 6.622 14 N -0.731 5.731 15 C 0.132 3.868 16 C 0.115 3.885 17 N -0.578 5.578 18 C 0.513 3.487 19 O -0.500 6.500 20 C 0.076 3.924 21 N -0.708 5.708 22 C 0.695 3.305 23 O -0.582 6.582 24 C 0.444 3.556 25 F -0.185 7.185 26 F -0.191 7.191 27 F -0.186 7.186 28 H 0.280 0.720 29 H 0.410 0.590 30 H 0.415 0.585 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.127 9.741 -14.252 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.755 3.245 4 H -0.173 1.173 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.124 3.876 10 H 0.093 0.907 11 N -0.384 5.384 12 C 0.391 3.609 13 O -0.503 6.503 14 N -0.390 5.390 15 C 0.007 3.993 16 C -0.007 4.007 17 N -0.325 5.325 18 C 0.303 3.697 19 O -0.371 6.371 20 C -0.050 4.050 21 N -0.373 5.373 22 C 0.395 3.605 23 O -0.459 6.459 24 C 0.388 3.612 25 F -0.166 7.166 26 F -0.173 7.173 27 F -0.168 7.168 28 H 0.090 0.910 29 H 0.248 0.752 30 H 0.252 0.748 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.173 0.827 36 H 0.181 0.819 37 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 19.181 9.696 -13.353 25.302 hybrid contribution -0.215 -0.042 -0.313 0.383 sum 18.965 9.653 -13.666 25.291 Atomic orbital electron populations 1.69938 1.07616 1.29351 1.46436 1.25392 0.95110 1.01553 0.91872 0.85980 0.78479 0.79564 0.80436 1.17298 1.20974 1.20122 1.20742 0.87596 0.95560 1.53880 0.91502 1.19738 0.96761 0.85365 0.85737 0.90696 1.46320 1.15260 1.61767 1.15029 1.16403 0.82426 0.78469 0.83560 1.90878 1.52416 1.65100 1.41871 1.44721 1.18469 1.64007 1.11758 1.21306 0.83988 0.97185 0.96864 1.21693 0.82422 1.00913 0.95703 1.46294 1.11399 1.11776 1.62990 1.21743 0.92540 0.80776 0.74661 1.90862 1.55973 1.46168 1.44094 1.22738 0.88821 0.86177 1.07304 1.45387 1.11466 1.08903 1.71543 1.16058 0.81656 0.84863 0.77929 1.91032 1.84577 1.13955 1.56306 1.21394 0.74645 0.92014 0.73162 1.93086 1.88566 1.79529 1.55466 1.93154 1.30807 1.97117 1.96215 1.93101 1.88873 1.86795 1.48036 0.91002 0.75216 0.74812 0.92701 0.92614 0.86727 0.86456 0.82673 0.81895 0.69728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.46 13.96 21.45 0.30 -49.17 16 2 C 0.07 3.49 5.46 84.65 0.46 3.95 16 3 Si 0.93 41.91 26.12 68.60 1.79 43.71 16 4 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -13.24 6.55 99.48 0.65 -12.59 16 7 C -0.54 -28.02 8.64 25.60 0.22 -27.80 16 8 H 0.07 3.82 7.91 -2.91 -0.02 3.80 16 9 C 0.23 10.73 1.41 44.25 0.06 10.79 16 10 H 0.08 3.79 6.29 -2.39 -0.02 3.77 16 11 N -0.73 -29.36 3.20 -461.41 -1.48 -30.84 16 12 C 0.69 27.39 7.95 179.05 1.42 28.81 16 13 O -0.62 -29.43 14.91 -3.98 -0.06 -29.49 16 14 N -0.73 -21.31 5.56 -478.54 -2.66 -23.97 16 15 C 0.13 3.50 6.00 86.38 0.52 4.02 16 16 C 0.12 2.14 5.82 86.38 0.50 2.64 16 17 N -0.58 -9.96 2.60 -773.12 -2.01 -11.97 16 18 C 0.51 7.47 8.32 87.94 0.73 8.20 16 19 O -0.50 -10.95 17.75 -2.92 -0.05 -11.00 16 20 C 0.08 0.24 7.97 85.76 0.68 0.93 16 21 N -0.71 -5.08 6.58 -480.33 -3.16 -8.24 16 22 C 0.69 12.33 8.62 179.44 1.55 13.87 16 23 O -0.58 -15.55 17.48 -3.81 -0.07 -15.62 16 24 C 0.44 20.02 2.79 71.98 0.20 20.22 16 25 F -0.18 -8.00 16.97 44.97 0.76 -7.24 16 26 F -0.19 -8.66 15.84 44.97 0.71 -7.94 16 27 F -0.19 -8.51 16.83 44.97 0.76 -7.75 16 28 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.41 14.70 8.61 -92.71 -0.80 13.90 16 30 H 0.41 9.03 8.49 -92.71 -0.79 8.24 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.11 1.94 7.86 -2.39 -0.02 1.93 16 34 H 0.12 1.86 8.00 -2.38 -0.02 1.84 16 35 H 0.16 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.16 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.46 1.00 8.96 -92.70 -0.83 0.17 16 Total: -1.00 -78.11 338.57 -0.09 -78.19 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -1.27 Total: 15.69 kcal Atomic # 6 Polarization: 59.28 SS G_CDS: 6.35 Total: 65.63 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -9.01 Total: -124.18 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -0.18 Total: -56.11 kcal Atomic # 9 Polarization: -25.17 SS G_CDS: 2.23 Total: -22.94 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.79 Total: 43.71 kcal Total: -78.11 -0.09 -78.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477100976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.108 kcal (2) G-P(sol) polarization free energy of solvation -78.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds