Wall clock time and date at job start Tue Mar 31 2020 21:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00011 * 2 1 4 4 H 1.48502 * 109.46607 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47092 * 300.00147 * 3 2 1 6 6 H 1.48500 * 109.46773 * 60.00285 * 3 2 1 7 7 C 1.38808 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00294 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00189 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47450 * 179.97438 * 10 9 7 12 12 C 1.53778 * 113.61739 * 185.00263 * 11 10 9 13 13 C 1.53789 * 87.07783 * 220.02073 * 12 11 10 14 14 N 1.46499 * 113.61275 * 139.98141 * 13 12 11 15 15 C 1.34777 * 119.99731 * 156.52578 * 14 13 12 16 16 O 1.21772 * 120.00400 * 359.97438 * 15 14 13 17 17 C 1.41719 * 119.99805 * 179.97438 * 15 14 13 18 18 S 1.75661 * 125.10197 * 359.97438 * 17 15 14 19 19 C 1.75564 * 91.21158 * 179.97438 * 18 17 15 20 20 C 1.34197 * 110.67746 * 359.96653 * 19 18 17 21 21 C 1.37155 * 125.10018 * 180.02562 * 17 15 14 22 22 O 1.37655 * 124.48820 * 0.34724 * 21 17 15 23 23 C 1.43304 * 114.55828 * 163.44510 * 22 21 17 24 24 C 1.53220 * 109.21072 * 46.27688 * 23 22 21 25 25 O 1.38246 * 124.13895 * 180.24683 * 20 19 18 26 26 C 1.53771 * 87.17469 * 25.38815 * 13 12 11 27 27 H 0.96999 * 119.99655 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99798 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.46984 * 59.99802 * 10 9 7 30 30 H 1.08998 * 109.47311 * 299.99980 * 10 9 7 31 31 H 1.09008 * 112.84753 * 316.20221 * 11 10 9 32 32 H 1.08997 * 113.62062 * 105.46986 * 12 11 10 33 33 H 1.09002 * 113.61022 * 334.56217 * 12 11 10 34 34 H 1.09001 * 113.60900 * 270.79749 * 13 12 11 35 35 H 0.96994 * 120.00084 * 336.52758 * 14 13 12 36 36 H 1.07995 * 124.66183 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.42304 * 286.39970 * 23 22 21 38 38 H 1.08999 * 109.56043 * 166.24399 * 23 22 21 39 39 H 1.09009 * 109.52464 * 177.91148 * 24 23 22 40 40 H 1.09000 * 109.52791 * 57.71983 * 24 23 22 41 41 H 1.09005 * 113.61492 * 89.15920 * 26 13 12 42 42 H 1.08999 * 113.61791 * 220.06207 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 6 1.7304 -6.2001 0.1230 13 6 0.7044 -6.7000 -0.9077 14 7 1.2665 -7.6267 -1.8933 15 6 0.4617 -8.4950 -2.5375 16 8 -0.7325 -8.5096 -2.2999 17 6 1.0054 -9.3912 -3.4913 18 16 2.7020 -9.4850 -3.9369 19 6 2.3695 -10.7783 -5.0767 20 6 1.0620 -11.0803 -5.0825 21 6 0.2857 -10.3146 -4.2057 22 8 -1.0748 -10.4948 -4.0987 23 6 -1.6648 -11.2306 -5.1775 24 6 -0.8147 -12.4725 -5.4651 25 8 0.4960 -12.0619 -5.8745 26 6 0.6138 -5.2489 -1.4083 27 1 -0.4849 0.8401 -0.0004 28 1 0.3556 -2.3880 0.0002 29 1 2.6847 -3.7145 0.8895 30 1 2.6846 -3.7146 -0.8905 31 1 0.2379 -4.6701 0.6957 32 1 1.6169 -6.6538 1.1076 33 1 2.7585 -6.2221 -0.2384 34 1 -0.2200 -7.0664 -0.4612 35 1 2.2178 -7.6155 -2.0822 36 1 3.1149 -11.2646 -5.6884 37 1 -1.7034 -10.6016 -6.0669 38 1 -2.6743 -11.5359 -4.9020 39 1 -1.2792 -13.0558 -6.2604 40 1 -0.7399 -13.0797 -4.5630 41 1 1.3361 -5.0103 -2.1890 42 1 -0.3999 -4.9356 -1.6581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485106660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:19 Heat of formation + Delta-G solvation = -33.598401 kcal Electronic energy + Delta-G solvation = -25983.876359 eV Core-core repulsion = 22057.855325 eV Total energy + Delta-G solvation = -3926.021034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47747 -40.06442 -38.37316 -37.38899 -36.00137 -34.52046 -33.31005 -30.94898 -30.29494 -30.01701 -26.88353 -25.47033 -25.26032 -24.20706 -23.21163 -21.82032 -20.77188 -19.88509 -19.66953 -18.97972 -17.67649 -17.30525 -17.02982 -16.75892 -16.06487 -15.62122 -15.27087 -15.15564 -15.08679 -14.72681 -14.65438 -14.46280 -13.94189 -13.60479 -13.38282 -13.14253 -13.07409 -12.91521 -12.24287 -11.83541 -11.76659 -11.58356 -11.51977 -11.44061 -11.20495 -11.11894 -10.84249 -10.68429 -10.30875 -10.06845 -10.00890 -9.81235 -9.59776 -9.11728 -8.87479 -8.79842 -8.41435 -6.86180 -5.72029 -3.00302 0.00193 0.91031 1.14347 1.75964 2.77792 2.97165 3.10624 3.13837 3.45925 3.51055 3.53676 3.66847 4.06922 4.36548 4.41743 4.61554 4.68539 4.77912 4.86506 4.87335 4.89443 5.02679 5.04771 5.10892 5.17202 5.49575 5.61810 5.77318 5.87874 5.96422 6.09322 6.13570 6.18580 6.29036 6.33964 6.46960 6.61631 6.66571 6.82702 6.96937 7.42099 7.74016 8.13415 8.47129 9.58032 10.17712 10.52126 11.50988 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023653 B = 0.001995 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.519027 B =14029.902887 C =14335.653845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.165 3.835 11 C -0.110 4.110 12 C -0.137 4.137 13 C 0.121 3.879 14 N -0.716 5.716 15 C 0.589 3.411 16 O -0.517 6.517 17 C -0.278 4.278 18 S 0.213 5.787 19 C -0.210 4.210 20 C 0.033 3.967 21 C 0.128 3.872 22 O -0.259 6.259 23 C 0.012 3.988 24 C 0.018 3.982 25 O -0.291 6.291 26 C -0.139 4.139 27 H 0.254 0.746 28 H 0.384 0.616 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.395 0.605 36 H 0.183 0.817 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 -30.060 -11.671 32.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.038 3.962 11 C -0.129 4.129 12 C -0.176 4.176 13 C 0.017 3.983 14 N -0.367 5.367 15 C 0.377 3.623 16 O -0.395 6.395 17 C -0.399 4.399 18 S 0.476 5.524 19 C -0.347 4.347 20 C -0.023 4.023 21 C 0.067 3.933 22 O -0.171 6.171 23 C -0.065 4.065 24 C -0.059 4.059 25 O -0.207 6.207 26 C -0.177 4.177 27 H 0.064 0.936 28 H 0.218 0.782 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.229 0.771 36 H 0.200 0.800 37 H 0.099 0.901 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.477 -29.203 -11.054 31.418 hybrid contribution -0.797 0.052 -0.750 1.096 sum 2.680 -29.151 -11.805 31.564 Atomic orbital electron populations 1.69676 1.05090 1.25457 1.57961 1.24752 0.95538 0.97698 1.03226 0.86120 0.78745 0.84198 0.77157 1.20591 1.21915 1.21908 1.19283 0.91032 0.84256 1.42323 0.91195 1.42368 1.05924 0.99976 1.89351 1.20599 0.92879 0.85144 0.97600 1.22564 0.99456 0.93816 0.97113 1.23342 0.98663 0.96757 0.98832 1.22696 0.98319 0.88119 0.89215 1.45937 1.10714 1.37548 1.42507 1.15560 0.86566 0.79853 0.80361 1.90891 1.14263 1.69951 1.64410 1.22626 0.98490 1.07143 1.11603 1.84124 1.01946 1.32344 1.33973 1.24947 0.97357 1.05285 1.07100 1.18244 0.92099 0.94324 0.97671 1.18909 0.84947 0.93656 0.95805 1.87190 1.15302 1.71066 1.43586 1.23747 0.98464 0.93070 0.91182 1.23648 0.82185 0.96667 1.03352 1.87056 1.31518 1.52401 1.49696 1.23488 1.02622 0.93902 0.97728 0.93605 0.78238 0.96334 0.96347 0.88803 0.90868 0.89682 0.86767 0.77098 0.80010 0.90144 0.85469 0.85640 0.90326 0.89774 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.92 5.60 -59.91 -0.34 -19.25 16 10 C 0.17 3.33 6.10 -4.04 -0.02 3.30 16 11 C -0.11 -1.78 3.75 -89.72 -0.34 -2.11 16 12 C -0.14 -1.71 7.39 -25.92 -0.19 -1.90 16 13 C 0.12 1.62 4.21 -67.12 -0.28 1.34 16 14 N -0.72 -8.78 5.35 -55.88 -0.30 -9.07 16 15 C 0.59 8.46 7.59 -14.93 -0.11 8.35 16 16 O -0.52 -9.38 15.48 -11.89 -0.18 -9.57 16 17 C -0.28 -3.33 6.25 -38.65 -0.24 -3.57 16 18 S 0.21 1.67 22.17 -107.50 -2.38 -0.71 16 19 C -0.21 -1.62 11.17 29.31 0.33 -1.30 16 20 C 0.03 0.32 6.55 -40.38 -0.26 0.06 16 21 C 0.13 1.53 6.58 -39.35 -0.26 1.27 16 22 O -0.26 -3.20 9.60 -49.14 -0.47 -3.67 16 23 C 0.01 0.08 7.14 37.27 0.27 0.35 16 24 C 0.02 0.10 7.14 37.27 0.27 0.37 16 25 O -0.29 -2.55 10.77 -35.40 -0.38 -2.93 16 26 C -0.14 -2.15 7.45 -25.83 -0.19 -2.34 16 27 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.37 7.85 -51.93 -0.41 -0.03 16 31 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.11 1.66 7.50 -51.93 -0.39 1.28 16 35 H 0.39 3.84 7.65 -40.82 -0.31 3.52 16 36 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 1.31 7.90 -51.93 -0.41 0.90 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -36.25 365.66 -9.74 -45.98 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.60 Total: 7.77 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.29 Total: -3.70 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.09 Total: -56.40 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -1.04 Total: -16.16 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.38 Total: -0.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.25 -9.74 -45.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485106660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.385 kcal (2) G-P(sol) polarization free energy of solvation -36.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds