Wall clock time and date at job start Tue Mar 31 2020 21:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00011 * 2 1 4 4 H 1.48502 * 109.46607 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47092 * 300.00147 * 3 2 1 6 6 H 1.48500 * 109.46773 * 60.00285 * 3 2 1 7 7 C 1.38808 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00294 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00189 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47450 * 179.97438 * 10 9 7 12 12 C 1.53778 * 113.61739 * 185.00263 * 11 10 9 13 13 C 1.53789 * 87.07783 * 220.02073 * 12 11 10 14 14 N 1.46499 * 113.61275 * 139.98141 * 13 12 11 15 15 C 1.34777 * 119.99731 * 156.52578 * 14 13 12 16 16 O 1.21772 * 120.00400 * 359.97438 * 15 14 13 17 17 C 1.41719 * 119.99805 * 179.97438 * 15 14 13 18 18 S 1.75661 * 125.10197 * 359.97438 * 17 15 14 19 19 C 1.75564 * 91.21158 * 179.97438 * 18 17 15 20 20 C 1.34197 * 110.67746 * 359.96653 * 19 18 17 21 21 C 1.37155 * 125.10018 * 180.02562 * 17 15 14 22 22 O 1.37655 * 124.48820 * 0.34724 * 21 17 15 23 23 C 1.43304 * 114.55828 * 163.44510 * 22 21 17 24 24 C 1.53220 * 109.21072 * 46.27688 * 23 22 21 25 25 O 1.38246 * 124.13895 * 180.24683 * 20 19 18 26 26 C 1.53771 * 87.17469 * 25.38815 * 13 12 11 27 27 H 0.96999 * 119.99655 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99798 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.46984 * 59.99802 * 10 9 7 30 30 H 1.08998 * 109.47311 * 299.99980 * 10 9 7 31 31 H 1.09008 * 112.84753 * 316.20221 * 11 10 9 32 32 H 1.08997 * 113.62062 * 105.46986 * 12 11 10 33 33 H 1.09002 * 113.61022 * 334.56217 * 12 11 10 34 34 H 1.09001 * 113.60900 * 270.79749 * 13 12 11 35 35 H 0.96994 * 120.00084 * 336.52758 * 14 13 12 36 36 H 1.07995 * 124.66183 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.42304 * 286.39970 * 23 22 21 38 38 H 1.08999 * 109.56043 * 166.24399 * 23 22 21 39 39 H 1.09009 * 109.52464 * 177.91148 * 24 23 22 40 40 H 1.09000 * 109.52791 * 57.71983 * 24 23 22 41 41 H 1.09005 * 113.61492 * 89.15920 * 26 13 12 42 42 H 1.08999 * 113.61791 * 220.06207 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 6 1.7304 -6.2001 0.1230 13 6 0.7044 -6.7000 -0.9077 14 7 1.2665 -7.6267 -1.8933 15 6 0.4617 -8.4950 -2.5375 16 8 -0.7325 -8.5096 -2.2999 17 6 1.0054 -9.3912 -3.4913 18 16 2.7020 -9.4850 -3.9369 19 6 2.3695 -10.7783 -5.0767 20 6 1.0620 -11.0803 -5.0825 21 6 0.2857 -10.3146 -4.2057 22 8 -1.0748 -10.4948 -4.0987 23 6 -1.6648 -11.2306 -5.1775 24 6 -0.8147 -12.4725 -5.4651 25 8 0.4960 -12.0619 -5.8745 26 6 0.6138 -5.2489 -1.4083 27 1 -0.4849 0.8401 -0.0004 28 1 0.3556 -2.3880 0.0002 29 1 2.6847 -3.7145 0.8895 30 1 2.6846 -3.7146 -0.8905 31 1 0.2379 -4.6701 0.6957 32 1 1.6169 -6.6538 1.1076 33 1 2.7585 -6.2221 -0.2384 34 1 -0.2200 -7.0664 -0.4612 35 1 2.2178 -7.6155 -2.0822 36 1 3.1149 -11.2646 -5.6884 37 1 -1.7034 -10.6016 -6.0669 38 1 -2.6743 -11.5359 -4.9020 39 1 -1.2792 -13.0558 -6.2604 40 1 -0.7399 -13.0797 -4.5630 41 1 1.3361 -5.0103 -2.1890 42 1 -0.3999 -4.9356 -1.6581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485106660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:19 Heat of formation + Delta-G solvation = -59.821734 kcal Electronic energy + Delta-G solvation = -25985.013488 eV Core-core repulsion = 22057.855325 eV Total energy + Delta-G solvation = -3927.158163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.16525 -41.15646 -39.54724 -38.09531 -36.72336 -36.30898 -34.67912 -32.86357 -30.96159 -30.78222 -28.48588 -26.64639 -26.31612 -24.97791 -24.73051 -23.07149 -21.93777 -20.99003 -20.35855 -19.98099 -19.03520 -18.39444 -18.09673 -17.57394 -17.08424 -16.62935 -16.42316 -16.21819 -16.03914 -15.85294 -15.62868 -15.41893 -15.18991 -15.02877 -14.67930 -14.59433 -14.15759 -13.74381 -13.37475 -13.24931 -13.02970 -12.92940 -12.76349 -12.45711 -12.16522 -12.11935 -12.06672 -12.04036 -11.85724 -11.82217 -11.39741 -11.31461 -11.09432 -10.87496 -10.15332 -9.67045 -9.05588 -8.97092 -7.93847 -5.22586 -0.76789 0.24320 0.47208 1.02926 1.47525 1.48902 1.59036 2.02104 2.09274 2.21138 2.45599 2.57160 3.05470 3.39119 3.51150 3.56098 3.60186 3.88107 3.89866 3.90779 3.95161 4.02494 4.21416 4.31538 4.38600 4.50081 4.56993 4.59002 4.66216 4.79975 4.84513 4.89787 4.96584 5.01386 5.10446 5.23410 5.40527 5.50795 5.57847 5.63470 5.95998 6.28744 6.43449 7.11382 7.34261 8.12602 8.34419 9.30219 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023653 B = 0.001995 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.519027 B =14029.902887 C =14335.653845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.242 4.242 8 H 0.078 0.922 9 N -0.748 5.748 10 C 0.164 3.836 11 C -0.112 4.112 12 C -0.112 4.112 13 C 0.129 3.871 14 N -0.704 5.704 15 C 0.588 3.412 16 O -0.569 6.569 17 C -0.325 4.325 18 S 0.274 5.726 19 C -0.191 4.191 20 C 0.011 3.989 21 C 0.120 3.880 22 O -0.295 6.295 23 C 0.002 3.998 24 C 0.018 3.982 25 O -0.300 6.300 26 C -0.141 4.141 27 H 0.250 0.750 28 H 0.372 0.628 29 H 0.025 0.975 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.409 0.591 36 H 0.214 0.786 37 H 0.080 0.920 38 H 0.150 0.850 39 H 0.161 0.839 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.678 -31.703 -12.538 34.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.274 4.274 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.390 5.390 10 C 0.038 3.962 11 C -0.131 4.131 12 C -0.151 4.151 13 C 0.025 3.975 14 N -0.356 5.356 15 C 0.377 3.623 16 O -0.450 6.450 17 C -0.444 4.444 18 S 0.538 5.462 19 C -0.329 4.329 20 C -0.045 4.045 21 C 0.057 3.943 22 O -0.209 6.209 23 C -0.073 4.073 24 C -0.057 4.057 25 O -0.216 6.216 26 C -0.180 4.180 27 H 0.059 0.941 28 H 0.203 0.797 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.246 0.754 36 H 0.231 0.769 37 H 0.098 0.902 38 H 0.167 0.833 39 H 0.179 0.821 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.276 -30.881 -11.924 33.692 hybrid contribution -1.618 0.468 -0.547 1.771 sum 4.658 -30.413 -12.471 33.199 Atomic orbital electron populations 1.69844 1.06740 1.25936 1.59821 1.25633 0.96443 1.01335 1.03967 0.85034 0.78313 0.79612 0.76576 1.18732 1.22166 1.22094 1.19723 0.91605 0.85390 1.40688 0.90368 1.42637 1.05646 1.01416 1.89296 1.20787 0.93473 0.84118 0.97816 1.22457 0.98878 0.94471 0.97296 1.23246 0.99100 0.93233 0.99507 1.22430 0.98548 0.87025 0.89533 1.45766 1.11301 1.36680 1.41830 1.15910 0.86045 0.79973 0.80360 1.90852 1.16399 1.71545 1.66206 1.22627 1.01397 1.07947 1.12468 1.83802 0.98184 1.31444 1.32811 1.25463 0.97315 1.04109 1.05981 1.18308 0.92617 0.95179 0.98346 1.19289 0.85086 0.93863 0.96054 1.87126 1.16084 1.71982 1.45673 1.24074 0.99651 0.93413 0.90130 1.23876 0.80986 0.96028 1.04835 1.87031 1.32704 1.52087 1.49780 1.23492 1.01332 0.95662 0.97548 0.94107 0.79666 0.95708 0.95648 0.89947 0.88966 0.87368 0.88130 0.75386 0.76898 0.90161 0.83274 0.82106 0.90163 0.89611 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.24 13.06 21.65 0.28 -60.95 16 2 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 3 Si 0.98 46.88 29.55 68.60 2.03 48.91 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 7 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 9 N -0.75 -38.95 5.60 -343.46 -1.92 -40.87 16 10 C 0.16 6.47 6.10 86.38 0.53 7.00 16 11 C -0.11 -3.56 3.75 -10.21 -0.04 -3.59 16 12 C -0.11 -2.56 7.39 31.12 0.23 -2.33 16 13 C 0.13 3.43 4.21 45.52 0.19 3.62 16 14 N -0.70 -16.76 5.35 -448.88 -2.40 -19.16 16 15 C 0.59 17.19 7.59 85.10 0.65 17.83 16 16 O -0.57 -21.72 15.48 11.69 0.18 -21.54 16 17 C -0.32 -7.69 6.25 22.88 0.14 -7.55 16 18 S 0.27 3.65 22.17 -56.49 -1.25 2.39 16 19 C -0.19 -2.44 11.17 66.90 0.75 -1.69 16 20 C 0.01 0.21 6.55 21.75 0.14 0.35 16 21 C 0.12 2.86 6.58 22.42 0.15 3.01 16 22 O -0.30 -7.59 9.60 -90.55 -0.87 -8.46 16 23 C 0.00 0.03 7.14 72.06 0.51 0.55 16 24 C 0.02 0.18 7.14 72.06 0.51 0.70 16 25 O -0.30 -4.77 10.77 -113.05 -1.22 -5.99 16 26 C -0.14 -4.44 7.45 31.18 0.23 -4.21 16 27 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.37 20.88 7.67 -92.71 -0.71 20.16 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.03 0.98 7.85 -2.39 -0.02 0.96 16 31 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.11 2.01 8.07 -2.39 -0.02 1.99 16 34 H 0.10 3.01 7.50 -2.39 -0.02 2.99 16 35 H 0.41 7.14 7.65 -92.71 -0.71 6.43 16 36 H 0.21 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.16 0.39 8.14 -2.38 -0.02 0.37 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 2.65 7.90 -2.38 -0.02 2.63 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -81.12 365.66 -0.21 -81.33 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -0.35 Total: 27.94 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 5.30 Total: -3.60 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -4.04 Total: -120.99 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -1.91 Total: -35.98 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.25 Total: 2.39 kcal Total: -81.12 -0.21 -81.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485106660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.509 kcal (2) G-P(sol) polarization free energy of solvation -81.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds