Wall clock time and date at job start Tue Mar 31 2020 20:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47055 * 324.99804 * 10 9 7 12 12 C 1.52995 * 109.47120 * 84.99640 * 10 9 7 13 13 O 1.42899 * 109.47156 * 65.00268 * 12 10 9 14 14 C 1.52998 * 109.47009 * 204.99963 * 10 9 7 15 15 N 1.46500 * 109.47304 * 54.99714 * 14 10 9 16 16 C 1.34776 * 119.99630 * 179.97438 * 15 14 10 17 17 O 1.21622 * 120.00375 * 0.02562 * 16 15 14 18 18 C 1.47314 * 119.99541 * 179.97438 * 16 15 14 19 19 C 1.35205 * 122.42949 * 180.02562 * 18 16 15 20 20 S 1.71009 * 109.10562 * 180.02562 * 19 18 16 21 21 C 1.75998 * 90.57647 * 359.97438 * 20 19 18 22 22 C 1.47945 * 125.32223 * 180.02562 * 21 20 19 23 23 N 1.34101 * 125.67110 * 179.67005 * 22 21 20 24 24 C 1.30623 * 109.77754 * 179.81846 * 23 22 21 25 25 N 1.34575 * 108.33034 * 0.43917 * 24 23 22 26 26 H 0.97009 * 126.72916 * 179.75015 * 25 24 23 27 27 N 1.31645 * 125.66519 * 359.97438 * 22 21 20 28 28 N 1.29843 * 109.36217 * 359.74096 * 21 20 19 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47180 * 185.00052 * 12 10 9 32 32 H 1.09003 * 109.47292 * 304.99824 * 12 10 9 33 33 H 0.96704 * 113.99871 * 179.97438 * 13 12 10 34 34 H 1.09008 * 109.46958 * 174.99988 * 14 10 9 35 35 H 1.08993 * 109.47007 * 294.99451 * 14 10 9 36 36 H 0.96999 * 119.99793 * 0.02562 * 15 14 10 37 37 H 1.07998 * 125.44568 * 359.96415 * 19 18 16 38 38 H 1.07996 * 125.83182 * 180.21177 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9664 -3.5493 -0.6042 12 6 2.4273 -4.0388 1.4232 13 8 1.2359 -4.2934 2.1701 14 6 1.1784 -4.7507 -0.6202 15 7 0.7267 -4.3311 -1.9492 16 6 -0.0652 -5.1417 -2.6788 17 8 -0.4051 -6.2213 -2.2338 18 6 -0.5198 -4.7194 -4.0149 19 6 -1.3149 -5.4928 -4.7881 20 16 -1.6306 -4.6773 -6.2577 21 6 -0.6519 -3.3125 -5.7313 22 6 -0.4063 -2.0828 -6.5163 23 7 0.3328 -1.0365 -6.1197 24 6 0.3444 -0.1240 -7.0542 25 7 -0.4038 -0.5625 -8.0833 26 1 -0.5786 -0.0940 -8.9145 27 7 -0.8816 -1.8315 -7.7179 28 7 -0.1840 -3.5510 -4.5438 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 3.0478 -4.9349 1.4124 32 1 2.9788 -3.2206 1.8865 33 1 1.3947 -4.5421 3.0910 34 1 1.7530 -5.6731 -0.7062 35 1 0.3134 -4.9200 0.0209 36 1 0.9981 -3.4701 -2.3042 37 1 -1.6897 -6.4697 -4.5209 38 1 0.8627 0.8223 -7.0074 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507245059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:37 Heat of formation + Delta-G solvation = 72.594347 kcal Electronic energy + Delta-G solvation = -26181.402680 eV Core-core repulsion = 22188.738916 eV Total energy + Delta-G solvation = -3992.663763 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.30393 -40.33038 -38.47477 -37.08324 -34.94656 -33.60972 -33.24492 -31.92494 -31.29380 -30.24685 -28.09389 -26.54778 -25.25850 -23.53852 -23.13134 -22.87033 -20.49537 -20.15184 -19.45094 -18.67942 -18.36164 -17.59103 -16.71688 -16.53731 -15.93631 -15.82323 -15.38942 -15.19886 -15.12917 -14.49887 -14.21962 -13.74309 -13.61161 -13.53491 -13.33116 -13.16247 -12.93228 -12.48897 -12.02382 -11.77471 -11.40813 -10.83465 -10.77706 -10.67436 -10.36358 -10.31170 -10.25184 -10.08106 -9.94975 -9.81166 -9.71804 -9.43290 -9.08386 -8.89206 -8.86531 -8.52816 -6.98146 -6.01613 -3.02024 0.08525 0.90199 1.25188 1.39169 1.95577 2.21227 2.90522 3.36510 3.54921 3.58401 3.59490 3.67248 3.76418 4.19282 4.66397 4.71720 4.75635 4.92961 5.07676 5.15635 5.41656 5.52491 5.62798 5.67089 5.81319 5.88022 5.91226 6.03332 6.05433 6.34937 6.48107 6.68220 6.73513 6.87943 7.28638 7.75195 7.84502 7.98829 8.19617 8.52584 8.84336 9.28923 10.15905 10.30884 11.46340 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008684 B = 0.004241 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.496881 B = 6600.302567 C = 9426.416785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.038 4.038 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.295 1.295 7 C -0.337 4.337 8 H 0.063 0.937 9 N -0.722 5.722 10 C 0.172 3.828 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.562 6.562 14 C 0.116 3.884 15 N -0.692 5.692 16 C 0.588 3.412 17 O -0.548 6.548 18 C 0.018 3.982 19 C -0.212 4.212 20 S 0.224 5.776 21 C 0.114 3.886 22 C 0.302 3.698 23 N -0.495 5.495 24 C 0.271 3.729 25 N -0.478 5.478 26 H 0.445 0.555 27 N -0.295 5.295 28 N -0.384 5.384 29 H 0.257 0.743 30 H 0.372 0.628 31 H 0.028 0.972 32 H 0.050 0.950 33 H 0.364 0.636 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.420 0.580 37 H 0.197 0.803 38 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.151 -6.036 -16.593 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.237 4.237 3 Si 0.910 3.090 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.222 1.222 7 C -0.467 4.467 8 H 0.081 0.919 9 N -0.365 5.365 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.021 4.021 13 O -0.365 6.365 14 C -0.009 4.009 15 N -0.342 5.342 16 C 0.370 3.630 17 O -0.427 6.427 18 C -0.120 4.120 19 C -0.355 4.355 20 S 0.479 5.521 21 C -0.165 4.165 22 C 0.019 3.981 23 N -0.222 5.222 24 C -0.028 4.028 25 N -0.198 5.198 26 H 0.292 0.708 27 N -0.128 5.128 28 N -0.100 5.100 29 H 0.068 0.932 30 H 0.206 0.794 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.209 0.791 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.259 0.741 37 H 0.214 0.786 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.794 -5.238 -17.503 18.287 hybrid contribution 0.731 -1.004 0.832 1.495 sum -0.063 -6.243 -16.671 17.801 Atomic orbital electron populations 1.70837 1.06060 1.28670 1.52680 1.25693 0.97009 1.00816 1.00181 0.83268 0.74195 0.75816 0.75695 1.21185 1.22528 1.22197 1.19969 0.91789 0.85701 1.49271 0.91881 1.42335 1.05047 0.99998 1.89139 1.20514 0.95005 0.86530 0.91925 0.91494 1.23031 0.86534 0.97304 0.95269 1.86555 1.32359 1.91819 1.25782 1.21647 0.99591 0.97165 0.82447 1.45889 1.48753 1.21939 1.17651 1.17041 0.79032 0.84245 0.82681 1.90776 1.58268 1.22327 1.71328 1.20298 1.02471 0.90515 0.98682 1.26781 1.03307 1.06896 0.98543 1.83848 1.45023 1.08743 1.14446 1.23691 1.03017 0.96226 0.93578 1.20513 0.95722 0.92373 0.89497 1.70776 1.21766 1.00795 1.28814 1.26390 0.93326 1.00073 0.83035 1.48138 1.39164 1.13951 1.18529 0.70825 1.78210 1.22845 0.97367 1.14425 1.66923 1.19666 1.16108 1.07334 0.93189 0.79442 0.95420 0.93208 0.79125 0.91761 0.90438 0.74114 0.78621 0.75194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.54 13.70 55.49 0.76 -28.78 16 2 C -0.04 -1.12 5.50 -17.43 -0.10 -1.22 16 3 Si 1.08 26.08 29.92 -169.99 -5.09 21.00 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.34 -9.37 9.93 -15.06 -0.15 -9.52 16 8 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 9 N -0.72 -18.20 4.51 -53.43 -0.24 -18.44 16 10 C 0.17 3.49 2.84 -67.93 -0.19 3.30 16 11 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 12 C 0.06 1.09 6.86 37.16 0.25 1.35 16 13 O -0.56 -10.36 12.64 -35.23 -0.45 -10.81 16 14 C 0.12 2.22 5.12 -4.04 -0.02 2.19 16 15 N -0.69 -13.57 5.38 -61.42 -0.33 -13.90 16 16 C 0.59 11.24 7.79 -12.57 -0.10 11.14 16 17 O -0.55 -11.23 16.65 5.26 0.09 -11.15 16 18 C 0.02 0.30 6.64 -84.93 -0.56 -0.26 16 19 C -0.21 -2.82 10.57 29.65 0.31 -2.50 16 20 S 0.22 2.54 23.17 -107.50 -2.49 0.05 16 21 C 0.11 1.76 7.50 -14.42 -0.11 1.65 16 22 C 0.30 4.53 8.04 -156.60 -1.26 3.27 16 23 N -0.49 -7.60 11.22 -12.46 -0.14 -7.74 16 24 C 0.27 2.56 13.11 -90.70 -1.19 1.37 16 25 N -0.48 -3.86 7.44 29.52 0.22 -3.65 16 26 H 0.45 1.55 8.96 -182.34 -1.63 -0.09 16 27 N -0.30 -3.61 12.84 32.03 0.41 -3.20 16 28 N -0.38 -6.86 10.07 -8.09 -0.08 -6.94 16 29 H 0.26 8.15 6.77 -40.82 -0.28 7.87 16 30 H 0.37 10.16 6.63 -40.82 -0.27 9.89 16 31 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.36 4.86 9.12 45.56 0.42 5.28 16 34 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 35 H 0.08 1.62 7.39 -51.93 -0.38 1.23 16 36 H 0.42 8.88 7.61 -40.82 -0.31 8.57 16 37 H 0.20 2.20 7.99 -52.49 -0.42 1.78 16 38 H 0.23 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -39.07 355.63 -9.28 -48.35 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -4.20 Total: 19.06 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -3.11 Total: 10.78 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: 0.60 Total: -82.65 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.36 Total: -21.95 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.09 Total: 21.00 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.49 Total: 0.05 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -39.07 -9.28 -48.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507245059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.945 kcal (2) G-P(sol) polarization free energy of solvation -39.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds