Wall clock time and date at job start Tue Mar 31 2020 20:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47055 * 324.99804 * 10 9 7 12 12 C 1.52995 * 109.47120 * 84.99640 * 10 9 7 13 13 O 1.42899 * 109.47156 * 65.00268 * 12 10 9 14 14 C 1.52998 * 109.47009 * 204.99963 * 10 9 7 15 15 N 1.46500 * 109.47304 * 54.99714 * 14 10 9 16 16 C 1.34776 * 119.99630 * 179.97438 * 15 14 10 17 17 O 1.21622 * 120.00375 * 0.02562 * 16 15 14 18 18 C 1.47314 * 119.99541 * 179.97438 * 16 15 14 19 19 C 1.35205 * 122.42949 * 180.02562 * 18 16 15 20 20 S 1.71009 * 109.10562 * 180.02562 * 19 18 16 21 21 C 1.75998 * 90.57647 * 359.97438 * 20 19 18 22 22 C 1.47945 * 125.32223 * 180.02562 * 21 20 19 23 23 N 1.34101 * 125.67110 * 179.67005 * 22 21 20 24 24 C 1.30623 * 109.77754 * 179.81846 * 23 22 21 25 25 N 1.34575 * 108.33034 * 0.43917 * 24 23 22 26 26 H 0.97009 * 126.72916 * 179.75015 * 25 24 23 27 27 N 1.31645 * 125.66519 * 359.97438 * 22 21 20 28 28 N 1.29843 * 109.36217 * 359.74096 * 21 20 19 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47180 * 185.00052 * 12 10 9 32 32 H 1.09003 * 109.47292 * 304.99824 * 12 10 9 33 33 H 0.96704 * 113.99871 * 179.97438 * 13 12 10 34 34 H 1.09008 * 109.46958 * 174.99988 * 14 10 9 35 35 H 1.08993 * 109.47007 * 294.99451 * 14 10 9 36 36 H 0.96999 * 119.99793 * 0.02562 * 15 14 10 37 37 H 1.07998 * 125.44568 * 359.96415 * 19 18 16 38 38 H 1.07996 * 125.83182 * 180.21177 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9664 -3.5493 -0.6042 12 6 2.4273 -4.0388 1.4232 13 8 1.2359 -4.2934 2.1701 14 6 1.1784 -4.7507 -0.6202 15 7 0.7267 -4.3311 -1.9492 16 6 -0.0652 -5.1417 -2.6788 17 8 -0.4051 -6.2213 -2.2338 18 6 -0.5198 -4.7194 -4.0149 19 6 -1.3149 -5.4928 -4.7881 20 16 -1.6306 -4.6773 -6.2577 21 6 -0.6519 -3.3125 -5.7313 22 6 -0.4063 -2.0828 -6.5163 23 7 0.3328 -1.0365 -6.1197 24 6 0.3444 -0.1240 -7.0542 25 7 -0.4038 -0.5625 -8.0833 26 1 -0.5786 -0.0940 -8.9145 27 7 -0.8816 -1.8315 -7.7179 28 7 -0.1840 -3.5510 -4.5438 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 3.0478 -4.9349 1.4124 32 1 2.9788 -3.2206 1.8865 33 1 1.3947 -4.5421 3.0910 34 1 1.7530 -5.6731 -0.7062 35 1 0.3134 -4.9200 0.0209 36 1 0.9981 -3.4701 -2.3042 37 1 -1.6897 -6.4697 -4.5209 38 1 0.8627 0.8223 -7.0074 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507245059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:36 Heat of formation + Delta-G solvation = 38.565002 kcal Electronic energy + Delta-G solvation = -26182.878303 eV Core-core repulsion = 22188.738916 eV Total energy + Delta-G solvation = -3994.139386 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.16401 -41.60974 -39.86046 -38.66154 -36.55294 -35.44183 -34.14342 -33.14825 -32.83274 -31.32047 -29.93628 -27.82618 -26.52970 -25.52975 -24.37450 -23.84654 -21.83920 -21.61745 -20.60804 -19.77650 -19.51517 -19.28159 -18.29042 -17.92491 -17.12153 -16.97329 -16.81655 -16.51827 -16.09873 -15.92653 -15.82852 -15.45487 -15.20173 -14.95764 -14.77768 -14.47808 -14.37384 -13.49180 -13.35327 -13.09803 -13.06426 -12.69084 -12.51468 -12.08268 -11.86095 -11.74675 -11.42434 -11.25030 -11.24332 -11.18714 -11.06918 -10.92523 -10.76457 -10.73008 -10.20375 -9.78476 -9.07943 -8.30652 -5.24418 -0.96004 -0.10383 0.24056 0.32586 0.89392 1.48664 1.60645 1.72199 1.86035 1.87216 2.15291 2.29071 2.55319 2.76721 3.23034 3.47121 3.53119 3.66147 3.74149 3.89266 3.97260 3.99896 4.15066 4.33796 4.46101 4.49050 4.55695 4.75317 4.89626 4.91631 5.02341 5.11886 5.34547 5.64893 6.08316 6.19840 6.48571 6.54561 6.91571 6.98714 7.02431 7.13932 8.02961 8.17954 9.20063 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008684 B = 0.004241 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.496881 B = 6600.302567 C = 9426.416785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.103 4.103 3 Si 1.127 2.873 4 H -0.297 1.297 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.326 4.326 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.165 3.835 11 H 0.073 0.927 12 C 0.068 3.932 13 O -0.584 6.584 14 C 0.127 3.873 15 N -0.698 5.698 16 C 0.586 3.414 17 O -0.568 6.568 18 C -0.016 4.016 19 C -0.206 4.206 20 S 0.331 5.669 21 C 0.081 3.919 22 C 0.277 3.723 23 N -0.560 5.560 24 C 0.285 3.715 25 N -0.454 5.454 26 H 0.467 0.533 27 N -0.300 5.300 28 N -0.425 5.425 29 H 0.239 0.761 30 H 0.357 0.643 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.387 0.613 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.412 0.588 37 H 0.217 0.783 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.931 -6.178 -18.365 19.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.294 4.294 3 Si 0.952 3.048 4 H -0.224 1.224 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.457 4.457 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.056 3.944 11 H 0.090 0.910 12 C -0.013 4.013 13 O -0.391 6.391 14 C 0.003 3.997 15 N -0.347 5.347 16 C 0.370 3.630 17 O -0.449 6.449 18 C -0.154 4.154 19 C -0.349 4.349 20 S 0.587 5.413 21 C -0.196 4.196 22 C -0.006 4.006 23 N -0.289 5.289 24 C -0.013 4.013 25 N -0.177 5.177 26 H 0.318 0.682 27 N -0.134 5.134 28 N -0.142 5.142 29 H 0.049 0.951 30 H 0.188 0.812 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.235 0.765 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.249 0.751 37 H 0.234 0.766 38 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 0.025 -5.421 -19.303 20.050 hybrid contribution 0.459 -1.033 1.232 1.672 sum 0.484 -6.453 -18.071 19.195 Atomic orbital electron populations 1.70970 1.07387 1.27558 1.56230 1.27131 0.96976 1.04629 1.00653 0.82645 0.73316 0.71704 0.77085 1.22370 1.20544 1.20110 1.20326 0.92241 0.86667 1.46455 0.91107 1.42450 1.04418 1.01135 1.89498 1.20776 0.94805 0.84972 0.93817 0.90958 1.22809 0.86636 0.98685 0.93122 1.86506 1.32866 1.91979 1.27715 1.21525 0.98735 0.97460 0.82007 1.45926 1.49275 1.21683 1.17831 1.17382 0.78308 0.83788 0.83495 1.90738 1.59013 1.22980 1.72181 1.20030 1.05144 0.91712 0.98484 1.27161 1.01294 1.07305 0.99164 1.83412 1.41601 1.04932 1.11343 1.24075 1.04008 0.98023 0.93538 1.20605 0.96951 0.92688 0.90356 1.70691 1.23880 1.02455 1.31861 1.27160 0.92134 1.00212 0.81759 1.48049 1.37866 1.12609 1.19146 0.68186 1.78075 1.22853 0.99171 1.13328 1.66841 1.21416 1.16969 1.08982 0.95091 0.81158 0.91197 0.94576 0.76501 0.89595 0.92436 0.75114 0.76607 0.70671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.35 13.70 21.65 0.30 -63.06 16 2 C -0.10 -6.08 5.50 84.86 0.47 -5.61 16 3 Si 1.13 52.79 29.92 68.60 2.05 54.84 16 4 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.33 -18.33 9.93 84.03 0.83 -17.50 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.73 -37.86 4.51 -322.95 -1.46 -39.31 16 10 C 0.17 6.74 2.84 44.99 0.13 6.87 16 11 H 0.07 2.86 8.08 -2.39 -0.02 2.84 16 12 C 0.07 2.39 6.86 71.98 0.49 2.89 16 13 O -0.58 -21.12 12.64 -148.98 -1.88 -23.01 16 14 C 0.13 4.91 5.12 86.38 0.44 5.35 16 15 N -0.70 -28.44 5.38 -466.48 -2.51 -30.95 16 16 C 0.59 23.12 7.79 86.63 0.68 23.79 16 17 O -0.57 -23.65 16.65 -4.10 -0.07 -23.72 16 18 C -0.02 -0.57 6.64 40.72 0.27 -0.30 16 19 C -0.21 -5.28 10.57 67.12 0.71 -4.57 16 20 S 0.33 6.95 23.17 -56.49 -1.31 5.65 16 21 C 0.08 2.54 7.50 87.56 0.66 3.20 16 22 C 0.28 8.31 8.04 137.25 1.10 9.42 16 23 N -0.56 -17.32 11.22 -193.35 -2.17 -19.49 16 24 C 0.29 4.93 13.11 180.38 2.36 7.29 16 25 N -0.45 -6.40 7.44 -60.52 -0.45 -6.85 16 26 H 0.47 1.93 8.96 -213.10 -1.91 0.01 16 27 N -0.30 -6.96 12.84 -52.56 -0.67 -7.64 16 28 N -0.42 -15.76 10.07 -179.51 -1.81 -17.57 16 29 H 0.24 15.92 6.77 -92.71 -0.63 15.29 16 30 H 0.36 20.42 6.63 -92.71 -0.61 19.80 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.39 9.81 9.12 -74.05 -0.68 9.13 16 34 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 35 H 0.06 2.46 7.39 -2.39 -0.02 2.44 16 36 H 0.41 18.34 7.61 -92.71 -0.71 17.64 16 37 H 0.22 4.48 7.99 -2.91 -0.02 4.45 16 38 H 0.28 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -88.96 355.63 -4.41 -93.38 By element: Atomic # 1 Polarization: 49.46 SS G_CDS: -2.58 Total: 46.89 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: 8.14 Total: 30.83 kcal Atomic # 7 Polarization: -176.08 SS G_CDS: -8.77 Total: -184.86 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -1.95 Total: -46.72 kcal Atomic # 14 Polarization: 52.79 SS G_CDS: 2.05 Total: 54.84 kcal Atomic # 16 Polarization: 6.95 SS G_CDS: -1.31 Total: 5.65 kcal Total: -88.96 -4.41 -93.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507245059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.942 kcal (2) G-P(sol) polarization free energy of solvation -88.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds