Wall clock time and date at job start Tue Mar 31 2020 21:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00293 * 2 1 4 4 H 1.48491 * 109.47347 * 270.00728 * 3 2 1 5 5 H 1.48504 * 109.46716 * 30.00543 * 3 2 1 6 6 H 1.48496 * 109.46923 * 150.00221 * 3 2 1 7 7 C 1.37881 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46756 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46823 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99843 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00007 * 179.97438 * 11 10 9 14 14 C 1.47222 * 121.32884 * 180.02562 * 13 11 10 15 15 C 1.52787 * 107.91390 * 115.77927 * 14 13 11 16 16 C 1.50599 * 110.92079 * 47.31874 * 15 14 13 17 17 C 1.37723 * 122.84594 * 340.16176 * 16 15 14 18 18 C 1.38791 * 119.84195 * 181.01919 * 17 16 15 19 19 C 1.38001 * 120.50633 * 359.43840 * 18 17 16 20 20 C 1.38219 * 119.71915 * 359.84040 * 19 18 17 21 21 C 1.37954 * 119.82760 * 0.25976 * 20 19 18 22 22 S 1.76196 * 119.71227 * 180.02562 * 21 20 19 23 23 N 1.65597 * 107.21775 * 115.00138 * 22 21 20 24 24 O 1.42099 * 106.40200 * 1.46050 * 22 21 20 25 25 O 1.42099 * 106.40670 * 228.54605 * 22 21 20 26 26 C 1.46683 * 121.32368 * 0.02562 * 13 11 10 27 27 H 0.97000 * 119.99811 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47264 * 59.99923 * 9 7 2 29 29 H 1.08998 * 109.46850 * 299.99977 * 9 7 2 30 30 H 1.08999 * 109.47371 * 59.99899 * 10 9 7 31 31 H 1.08998 * 109.47349 * 299.99582 * 10 9 7 32 32 H 1.09004 * 109.77319 * 235.38859 * 14 13 11 33 33 H 1.09006 * 109.77350 * 356.12311 * 14 13 11 34 34 H 1.08999 * 109.20117 * 167.89044 * 15 14 13 35 35 H 1.08999 * 109.20566 * 287.23449 * 15 14 13 36 36 H 1.08004 * 119.74303 * 179.41698 * 18 17 16 37 37 H 1.08001 * 120.14022 * 179.81909 * 19 18 17 38 38 H 1.07995 * 120.08817 * 180.24057 * 20 19 18 39 39 H 0.97001 * 120.00224 * 0.02562 * 23 22 21 40 40 H 0.97005 * 120.00050 * 179.72515 * 23 22 21 41 41 H 1.08995 * 109.43497 * 104.35120 * 26 13 11 42 42 H 1.08998 * 109.43560 * 344.47715 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4916 -4.9672 0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1654 -6.1345 -0.0003 14 6 1.4590 -7.4261 -0.0003 15 6 1.7878 -8.1416 -1.3096 16 6 3.2679 -8.1054 -1.5853 17 6 4.1155 -7.1942 -0.9952 18 6 5.4671 -7.2033 -1.3107 19 6 5.9719 -8.1267 -2.2035 20 6 5.1250 -9.0514 -2.7851 21 6 3.7811 -9.0420 -2.4739 22 16 2.7045 -10.2226 -3.2166 23 7 2.1329 -11.1954 -2.0045 24 8 3.5185 -11.0451 -4.0411 25 8 1.5873 -9.4942 -3.7071 26 6 3.6319 -6.1684 -0.0008 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8718 -3.6044 0.8894 31 1 2.8718 -3.6045 -0.8905 32 1 1.7936 -8.0294 0.8437 33 1 0.3842 -7.2586 0.0695 34 1 1.4581 -9.1785 -1.2441 35 1 1.2631 -7.6497 -2.1286 36 1 6.1287 -6.4820 -0.8542 37 1 7.0241 -8.1266 -2.4469 38 1 5.5144 -9.7792 -3.4815 39 1 2.4128 -11.0438 -1.0882 40 1 1.5148 -11.9142 -2.2102 41 1 3.9889 -6.4317 0.9948 42 1 4.0173 -5.1867 -0.2759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558078357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:08 Heat of formation + Delta-G solvation = -85.764724 kcal Electronic energy + Delta-G solvation = -27131.085885 eV Core-core repulsion = 23202.802750 eV Total energy + Delta-G solvation = -3928.283136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.72868 -39.01125 -37.51905 -36.12437 -36.05638 -34.05439 -33.55911 -33.15075 -31.75154 -31.08400 -29.76136 -26.39855 -25.51892 -24.02530 -23.48975 -21.90532 -20.56790 -19.80182 -18.50052 -18.40015 -17.79223 -17.14045 -16.80632 -16.31197 -16.08339 -15.76581 -15.66264 -15.42328 -14.88303 -14.50227 -14.42697 -14.21928 -13.74845 -13.39338 -13.14520 -12.80738 -12.58946 -12.46024 -12.37740 -12.29845 -12.25068 -12.21585 -12.07506 -11.81442 -11.23649 -11.17465 -10.96010 -10.92965 -10.81285 -10.61231 -10.00388 -9.74393 -9.64058 -9.24294 -9.08140 -9.02585 -8.61992 -8.34066 -5.98072 -4.02782 0.03894 0.40056 0.86834 2.71338 3.00637 3.05197 3.11885 3.31818 3.35424 3.38060 3.40107 4.06686 4.20239 4.37216 4.44722 4.54290 4.58660 4.85232 4.88147 5.02937 5.04871 5.16522 5.26310 5.27764 5.36958 5.38624 5.50233 5.56991 5.64989 5.82117 5.88507 5.89530 6.01660 6.13169 6.14501 6.40102 6.51804 6.59113 6.82638 7.60799 7.71548 7.82817 8.04364 8.34787 8.62750 9.05266 9.60864 11.12870 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.002670 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.604680 B =10482.709974 C =11094.151316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.518 3.482 12 O -0.526 6.526 13 N -0.628 5.628 14 C 0.114 3.886 15 C -0.135 4.135 16 C 0.034 3.966 17 C -0.112 4.112 18 C -0.051 4.051 19 C -0.143 4.143 20 C -0.016 4.016 21 C -0.679 4.679 22 S 2.701 3.299 23 N -1.251 6.251 24 O -0.968 6.968 25 O -0.955 6.955 26 C 0.150 3.850 27 H 0.261 0.739 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.417 0.583 40 H 0.421 0.579 41 H 0.083 0.917 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.181 -24.956 -0.931 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.308 3.692 12 O -0.400 6.400 13 N -0.364 5.364 14 C -0.009 4.009 15 C -0.173 4.173 16 C 0.032 3.968 17 C -0.113 4.113 18 C -0.069 4.069 19 C -0.162 4.162 20 C -0.036 4.036 21 C -0.767 4.767 22 S 2.790 3.210 23 N -0.926 5.926 24 O -0.957 6.957 25 O -0.944 6.944 26 C 0.026 3.974 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.244 0.756 40 H 0.252 0.748 41 H 0.101 0.899 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.174 -24.743 -1.983 27.222 hybrid contribution 0.940 0.957 0.768 1.545 sum 12.114 -23.786 -1.215 26.721 Atomic orbital electron populations 1.69994 1.06061 1.26632 1.50030 1.25025 0.94826 0.99237 0.95271 0.86590 0.79743 0.83517 0.78083 1.20663 1.21207 1.19901 1.21194 0.92870 0.90968 1.51586 0.92637 1.18914 0.93153 0.89304 0.98701 1.21916 1.00850 0.91823 1.02313 1.21597 0.88452 0.85123 0.74006 1.90677 1.14233 1.86881 1.48182 1.48267 1.05846 1.06130 1.76188 1.21443 1.00144 0.84176 0.95117 1.21475 0.91276 1.02702 1.01821 1.19206 0.95235 0.91267 0.91094 1.20043 0.93723 0.97930 0.99653 1.21458 0.94401 0.96543 0.94508 1.21218 1.00427 0.96193 0.98322 1.20929 0.90922 0.96567 0.95152 1.30448 1.10275 1.19267 1.16712 1.01601 0.73758 0.73300 0.72323 1.53138 1.64552 1.50700 1.24228 1.93578 1.69827 1.67515 1.64826 1.93659 1.50922 1.72254 1.77550 1.20514 0.80953 0.98725 0.97176 0.92905 0.95765 0.95753 0.90127 0.90199 0.91081 0.87732 0.89560 0.86757 0.84537 0.84607 0.83720 0.75592 0.74842 0.89888 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.56 4.06 -27.88 -0.11 -2.67 16 11 C 0.52 9.83 7.72 -10.98 -0.08 9.75 16 12 O -0.53 -12.18 15.47 5.55 0.09 -12.09 16 13 N -0.63 -8.82 2.93 -174.38 -0.51 -9.33 16 14 C 0.11 1.34 6.44 -3.76 -0.02 1.32 16 15 C -0.13 -1.46 4.41 -28.04 -0.12 -1.59 16 16 C 0.03 0.35 5.76 -104.60 -0.60 -0.25 16 17 C -0.11 -1.11 5.82 -104.54 -0.61 -1.72 16 18 C -0.05 -0.40 9.62 -39.46 -0.38 -0.78 16 19 C -0.14 -1.08 10.05 -39.68 -0.40 -1.48 16 20 C -0.02 -0.14 9.53 -39.69 -0.38 -0.52 16 21 C -0.68 -6.53 5.88 -39.43 -0.23 -6.76 16 22 S 2.70 25.26 5.47 -107.50 -0.59 24.67 16 23 N -1.25 -6.31 8.29 60.35 0.50 -5.80 16 24 O -0.97 -11.37 16.94 -57.18 -0.97 -12.34 16 25 O -0.95 -12.38 16.03 -57.18 -0.92 -13.30 16 26 C 0.15 1.57 6.08 -5.03 -0.03 1.54 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 31 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 1.40 7.07 -51.93 -0.37 1.03 16 34 H 0.09 0.68 5.26 -51.93 -0.27 0.40 16 35 H 0.11 1.54 7.60 -51.93 -0.39 1.15 16 36 H 0.14 0.75 8.05 -52.48 -0.42 0.33 16 37 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.15 1.07 7.31 -52.49 -0.38 0.69 16 39 H 0.42 1.21 8.45 -34.47 -0.29 0.92 16 40 H 0.42 1.37 8.96 -34.47 -0.31 1.06 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.11 1.09 6.19 -51.93 -0.32 0.76 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -39.42 354.69 -10.07 -49.50 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.23 Total: -0.75 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -3.51 Total: -15.82 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.73 Total: -41.68 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.80 Total: -37.73 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 25.26 SS G_CDS: -0.59 Total: 24.67 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -39.42 -10.07 -49.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558078357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.267 kcal (2) G-P(sol) polarization free energy of solvation -39.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds