Wall clock time and date at job start Tue Mar 31 2020 21:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00293 * 2 1 4 4 H 1.48491 * 109.47347 * 270.00728 * 3 2 1 5 5 H 1.48504 * 109.46716 * 30.00543 * 3 2 1 6 6 H 1.48496 * 109.46923 * 150.00221 * 3 2 1 7 7 C 1.37881 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46756 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46823 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99843 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00007 * 179.97438 * 11 10 9 14 14 C 1.47222 * 121.32884 * 180.02562 * 13 11 10 15 15 C 1.52787 * 107.91390 * 115.77927 * 14 13 11 16 16 C 1.50599 * 110.92079 * 47.31874 * 15 14 13 17 17 C 1.37723 * 122.84594 * 340.16176 * 16 15 14 18 18 C 1.38791 * 119.84195 * 181.01919 * 17 16 15 19 19 C 1.38001 * 120.50633 * 359.43840 * 18 17 16 20 20 C 1.38219 * 119.71915 * 359.84040 * 19 18 17 21 21 C 1.37954 * 119.82760 * 0.25976 * 20 19 18 22 22 S 1.76196 * 119.71227 * 180.02562 * 21 20 19 23 23 N 1.65597 * 107.21775 * 115.00138 * 22 21 20 24 24 O 1.42099 * 106.40200 * 1.46050 * 22 21 20 25 25 O 1.42099 * 106.40670 * 228.54605 * 22 21 20 26 26 C 1.46683 * 121.32368 * 0.02562 * 13 11 10 27 27 H 0.97000 * 119.99811 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47264 * 59.99923 * 9 7 2 29 29 H 1.08998 * 109.46850 * 299.99977 * 9 7 2 30 30 H 1.08999 * 109.47371 * 59.99899 * 10 9 7 31 31 H 1.08998 * 109.47349 * 299.99582 * 10 9 7 32 32 H 1.09004 * 109.77319 * 235.38859 * 14 13 11 33 33 H 1.09006 * 109.77350 * 356.12311 * 14 13 11 34 34 H 1.08999 * 109.20117 * 167.89044 * 15 14 13 35 35 H 1.08999 * 109.20566 * 287.23449 * 15 14 13 36 36 H 1.08004 * 119.74303 * 179.41698 * 18 17 16 37 37 H 1.08001 * 120.14022 * 179.81909 * 19 18 17 38 38 H 1.07995 * 120.08817 * 180.24057 * 20 19 18 39 39 H 0.97001 * 120.00224 * 0.02562 * 23 22 21 40 40 H 0.97005 * 120.00050 * 179.72515 * 23 22 21 41 41 H 1.08995 * 109.43497 * 104.35120 * 26 13 11 42 42 H 1.08998 * 109.43560 * 344.47715 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4916 -4.9672 0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1654 -6.1345 -0.0003 14 6 1.4590 -7.4261 -0.0003 15 6 1.7878 -8.1416 -1.3096 16 6 3.2679 -8.1054 -1.5853 17 6 4.1155 -7.1942 -0.9952 18 6 5.4671 -7.2033 -1.3107 19 6 5.9719 -8.1267 -2.2035 20 6 5.1250 -9.0514 -2.7851 21 6 3.7811 -9.0420 -2.4739 22 16 2.7045 -10.2226 -3.2166 23 7 2.1329 -11.1954 -2.0045 24 8 3.5185 -11.0451 -4.0411 25 8 1.5873 -9.4942 -3.7071 26 6 3.6319 -6.1684 -0.0008 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8718 -3.6044 0.8894 31 1 2.8718 -3.6045 -0.8905 32 1 1.7936 -8.0294 0.8437 33 1 0.3842 -7.2586 0.0695 34 1 1.4581 -9.1785 -1.2441 35 1 1.2631 -7.6497 -2.1286 36 1 6.1287 -6.4820 -0.8542 37 1 7.0241 -8.1266 -2.4469 38 1 5.5144 -9.7792 -3.4815 39 1 2.4128 -11.0438 -1.0882 40 1 1.5148 -11.9142 -2.2102 41 1 3.9889 -6.4317 0.9948 42 1 4.0173 -5.1867 -0.2759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558078357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:07 Heat of formation + Delta-G solvation = -116.805069 kcal Electronic energy + Delta-G solvation = -27132.431896 eV Core-core repulsion = 23202.802750 eV Total energy + Delta-G solvation = -3929.629146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.66247 -40.20809 -38.37794 -37.17376 -36.98010 -35.61926 -34.73275 -33.90697 -32.99683 -32.50032 -30.70532 -27.98628 -26.72767 -25.10957 -24.22320 -23.44996 -21.79147 -20.52899 -19.69703 -19.11932 -18.79842 -18.44766 -17.72631 -17.51730 -17.13708 -16.92697 -16.60696 -16.42527 -16.34455 -15.82767 -15.56302 -15.03577 -14.76848 -14.59249 -14.25699 -14.21688 -13.73266 -13.60125 -13.38888 -13.27784 -13.24220 -13.16259 -13.06679 -13.00039 -12.83041 -12.67444 -12.45122 -12.06750 -11.93591 -11.72465 -11.57754 -11.36798 -11.30311 -10.76843 -10.56748 -10.34572 -9.82793 -9.67719 -8.17488 -6.31668 -0.67212 -0.28537 0.18637 1.42680 1.45516 1.56224 1.62944 1.92840 2.07366 2.33304 2.43436 2.66169 3.15807 3.31165 3.43611 3.62310 3.71788 3.80841 3.94135 4.13676 4.20227 4.28718 4.39566 4.41624 4.45972 4.52485 4.56612 4.64368 4.74638 4.80549 5.00418 5.02574 5.04885 5.22663 5.26986 5.33603 5.44460 5.52056 5.62136 5.77638 5.85157 6.17065 6.28065 6.33171 6.86869 7.19951 7.38766 8.95326 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.002670 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.604680 B =10482.709974 C =11094.151316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.042 3.958 10 C -0.116 4.116 11 C 0.514 3.486 12 O -0.585 6.585 13 N -0.618 5.618 14 C 0.110 3.890 15 C -0.131 4.131 16 C 0.014 3.986 17 C -0.122 4.122 18 C -0.045 4.045 19 C -0.137 4.137 20 C -0.026 4.026 21 C -0.681 4.681 22 S 2.716 3.284 23 N -1.234 6.234 24 O -0.994 6.994 25 O -0.998 6.998 26 C 0.142 3.858 27 H 0.262 0.738 28 H -0.022 1.022 29 H -0.016 1.016 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.155 0.845 39 H 0.429 0.571 40 H 0.431 0.569 41 H 0.117 0.883 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.409 -25.603 -0.051 30.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.175 1.175 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.004 3.996 10 C -0.156 4.156 11 C 0.305 3.695 12 O -0.464 6.464 13 N -0.351 5.351 14 C -0.012 4.012 15 C -0.169 4.169 16 C 0.013 3.987 17 C -0.124 4.124 18 C -0.064 4.064 19 C -0.156 4.156 20 C -0.045 4.045 21 C -0.770 4.770 22 S 2.807 3.193 23 N -0.915 5.915 24 O -0.983 6.983 25 O -0.987 6.987 26 C 0.021 3.979 27 H 0.071 0.929 28 H -0.004 1.004 29 H 0.002 0.998 30 H 0.129 0.871 31 H 0.119 0.881 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.097 0.903 36 H 0.185 0.815 37 H 0.185 0.815 38 H 0.172 0.828 39 H 0.260 0.740 40 H 0.265 0.735 41 H 0.135 0.865 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 15.461 -25.462 -1.102 29.809 hybrid contribution -0.324 1.043 0.495 1.199 sum 15.137 -24.420 -0.607 28.737 Atomic orbital electron populations 1.70184 1.08394 1.27787 1.51513 1.26157 0.95703 1.04021 0.94681 0.85318 0.78790 0.77683 0.78436 1.19924 1.21318 1.17534 1.21708 0.94058 0.91431 1.50681 0.90319 1.18695 0.93711 0.92550 0.94595 1.21666 0.99365 0.89857 1.04704 1.21391 0.87667 0.86435 0.73992 1.90657 1.16579 1.87811 1.51344 1.48172 1.07763 1.05355 1.73813 1.21654 0.98858 0.83519 0.97215 1.21381 0.92002 1.03673 0.99870 1.19168 0.94713 0.92467 0.92392 1.20089 0.94740 0.97651 0.99924 1.21798 0.93728 0.96830 0.93997 1.21619 1.01788 0.94989 0.97168 1.21229 0.90667 0.97247 0.95356 1.30275 1.10734 1.19211 1.16818 1.00799 0.72985 0.72997 0.72520 1.52726 1.64470 1.50222 1.24071 1.93545 1.70284 1.68066 1.66437 1.93622 1.52636 1.73361 1.79072 1.20883 0.78119 0.99559 0.99386 0.92905 1.00400 0.99797 0.87090 0.88104 0.87080 0.90192 0.87046 0.90301 0.81454 0.81508 0.82772 0.73995 0.73533 0.86526 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.75 13.29 21.45 0.28 -59.46 16 2 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.54 -30.42 9.11 25.60 0.23 -30.18 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.34 4.26 29.85 0.13 2.47 16 10 C -0.12 -4.58 4.06 29.85 0.12 -4.46 16 11 C 0.51 19.99 7.72 87.66 0.68 20.67 16 12 O -0.58 -28.95 15.47 -3.04 -0.05 -29.00 16 13 N -0.62 -16.77 2.93 -823.99 -2.42 -19.18 16 14 C 0.11 2.53 6.44 86.17 0.55 3.08 16 15 C -0.13 -2.83 4.41 29.75 0.13 -2.70 16 16 C 0.01 0.28 5.76 -19.85 -0.11 0.16 16 17 C -0.12 -2.07 5.82 -19.81 -0.12 -2.18 16 18 C -0.05 -0.52 9.62 22.35 0.22 -0.31 16 19 C -0.14 -1.51 10.05 22.21 0.22 -1.29 16 20 C -0.03 -0.38 9.53 22.20 0.21 -0.17 16 21 C -0.68 -12.06 5.88 22.37 0.13 -11.93 16 22 S 2.72 49.64 5.47 -56.49 -0.31 49.33 16 23 N -1.23 -10.79 8.29 37.02 0.31 -10.48 16 24 O -0.99 -22.80 16.94 -128.00 -2.17 -24.96 16 25 O -1.00 -26.75 16.03 -128.00 -2.05 -28.80 16 26 C 0.14 2.51 6.08 85.64 0.52 3.04 16 27 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 28 H -0.02 -1.43 8.10 -2.39 -0.02 -1.45 16 29 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 30 H 0.11 3.67 8.11 -2.39 -0.02 3.65 16 31 H 0.10 3.52 7.58 -2.39 -0.02 3.51 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 33 H 0.08 2.26 7.07 -2.38 -0.02 2.24 16 34 H 0.11 1.69 5.26 -2.39 -0.01 1.68 16 35 H 0.08 2.28 7.60 -2.39 -0.02 2.26 16 36 H 0.17 0.88 8.05 -2.91 -0.02 0.86 16 37 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 38 H 0.15 1.94 7.31 -2.91 -0.02 1.91 16 39 H 0.43 1.60 8.45 -96.74 -0.82 0.78 16 40 H 0.43 2.23 8.96 -96.74 -0.87 1.36 16 41 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.11 1.86 6.19 -2.39 -0.01 1.85 16 Total: -1.00 -91.77 354.69 -1.60 -93.37 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -0.60 Total: 7.08 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 3.38 Total: -23.82 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -1.83 Total: -89.13 kcal Atomic # 8 Polarization: -78.50 SS G_CDS: -4.27 Total: -82.76 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 49.64 SS G_CDS: -0.31 Total: 49.33 kcal Total: -91.77 -1.60 -93.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558078357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.432 kcal (2) G-P(sol) polarization free energy of solvation -91.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds