Wall clock time and date at job start Tue Mar 31 2020 20:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00154 * 2 1 4 4 H 1.48497 * 109.47218 * 270.00174 * 3 2 1 5 5 H 1.48500 * 109.46750 * 30.00687 * 3 2 1 6 6 H 1.48508 * 109.46817 * 150.00289 * 3 2 1 7 7 C 1.38818 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00098 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99825 * 359.97438 * 7 2 1 10 10 C 1.47150 * 125.58046 * 0.02708 * 9 7 2 11 11 C 1.54626 * 107.37677 * 179.04044 * 10 9 7 12 12 C 1.53509 * 102.70652 * 339.38633 * 11 10 9 13 13 C 1.51779 * 117.00446 * 164.16316 * 12 11 10 14 14 N 1.47395 * 87.51939 * 92.92768 * 13 12 11 15 15 C 1.34769 * 135.85457 * 205.66980 * 14 13 12 16 16 O 1.21578 * 120.00186 * 5.45575 * 15 14 13 17 17 C 1.47640 * 120.00018 * 185.46298 * 15 14 13 18 18 C 1.39694 * 120.15288 * 24.29277 * 17 15 14 19 19 C 1.37787 * 119.89066 * 180.02562 * 18 17 15 20 20 C 1.38612 * 120.20768 * 359.97438 * 19 18 17 21 21 Cl 1.73600 * 119.84830 * 180.02562 * 20 19 18 22 22 C 1.38351 * 120.31135 * 359.97438 * 20 19 18 23 23 C 1.38260 * 120.10485 * 0.02562 * 22 20 19 24 24 F 1.35092 * 120.10619 * 179.97438 * 23 22 20 25 25 C 1.47389 * 88.29099 * 25.92123 * 14 13 12 26 26 C 1.47758 * 125.57980 * 179.97438 * 9 7 2 27 27 H 0.97005 * 119.99923 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.86614 * 59.59284 * 10 9 7 29 29 H 1.09003 * 109.86390 * 298.48906 * 10 9 7 30 30 H 1.09001 * 110.76903 * 221.08145 * 11 10 9 31 31 H 1.09004 * 110.76355 * 97.68691 * 11 10 9 32 32 H 1.08994 * 113.54402 * 338.26927 * 13 12 11 33 33 H 1.09005 * 113.61001 * 207.59877 * 13 12 11 34 34 H 1.08001 * 120.05611 * 0.04285 * 18 17 15 35 35 H 1.08001 * 119.89855 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.95350 * 179.74138 * 22 20 19 37 37 H 1.08997 * 113.54521 * 88.74345 * 25 14 13 38 38 H 1.09004 * 113.54226 * 219.42136 * 25 14 13 39 39 H 1.08996 * 110.40249 * 83.55163 * 26 9 7 40 40 H 1.09002 * 110.40309 * 321.12361 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1390 -2.5312 -0.0006 11 6 -0.4552 -4.0445 -0.0253 12 6 0.8470 -4.6528 -0.5648 13 6 1.0378 -6.1472 -0.3805 14 7 0.4459 -6.3230 -1.7189 15 6 -0.2204 -7.3031 -2.3605 16 8 -0.5374 -8.3140 -1.7640 17 6 -0.5653 -7.1494 -3.7878 18 6 0.1827 -6.2960 -4.6024 19 6 -0.1443 -6.1562 -5.9336 20 6 -1.2127 -6.8600 -6.4670 21 17 -1.6160 -6.6773 -8.1456 22 6 -1.9586 -7.7083 -5.6681 23 6 -1.6419 -7.8583 -4.3307 24 9 -2.3705 -8.6862 -3.5505 25 6 0.9056 -4.9629 -2.0524 26 6 1.9364 -3.7335 -0.0016 27 1 -0.4850 0.8401 0.0004 28 1 -0.5581 -2.0508 -0.8847 29 1 -0.5552 -2.0805 0.9004 30 1 -1.2873 -4.2547 -0.6973 31 1 -0.6660 -4.4117 0.9792 32 1 0.4319 -6.5677 0.4221 33 1 2.0833 -6.4501 -0.3235 34 1 1.0161 -5.7470 -4.1896 35 1 0.4337 -5.4962 -6.5635 36 1 -2.7924 -8.2506 -6.0887 37 1 1.9144 -4.9329 -2.4640 38 1 0.1893 -4.3946 -2.6458 39 1 2.1987 -4.0325 1.0132 40 1 2.8172 -3.7504 -0.6435 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565498466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:07 Heat of formation + Delta-G solvation = 15.508198 kcal Electronic energy + Delta-G solvation = -26624.645779 eV Core-core repulsion = 22575.250155 eV Total energy + Delta-G solvation = -4049.395624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.16755 -40.94284 -39.47023 -38.10712 -36.84450 -35.75267 -32.45949 -31.71195 -30.99678 -29.47927 -28.70072 -26.19729 -25.98964 -24.28423 -23.51715 -22.95841 -20.39829 -19.95318 -18.66679 -17.93996 -17.42739 -17.02019 -16.75249 -16.20291 -15.78269 -15.66948 -15.39775 -14.98002 -14.66176 -14.23444 -13.94648 -13.81340 -13.73189 -13.50632 -13.30112 -12.75429 -12.53338 -12.33214 -12.01602 -11.97940 -11.87084 -11.71043 -11.47109 -11.06039 -10.97622 -10.73794 -10.52312 -10.29082 -10.15714 -9.94649 -9.79181 -9.67444 -9.48461 -9.15480 -8.66421 -8.65106 -6.89912 -5.76576 -3.10635 0.19243 0.64978 1.52532 2.46697 2.68202 3.23888 3.36303 3.41827 3.43806 3.78643 4.10770 4.17785 4.41859 4.46728 4.54300 4.66867 4.85880 4.98373 5.14606 5.18855 5.41635 5.44851 5.49155 5.55162 5.58653 5.59984 5.61879 5.72960 5.74438 5.81431 6.07305 6.17094 6.19607 6.39335 6.45945 6.58751 6.63857 7.50093 7.55839 7.65653 7.77110 8.02785 8.19086 9.15865 9.75994 10.41149 11.34841 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.002959 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.645634 B = 9461.042114 C =10881.549646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.118 4.118 12 C -0.104 4.104 13 C 0.121 3.879 14 N -0.636 5.636 15 C 0.584 3.416 16 O -0.530 6.530 17 C -0.158 4.158 18 C -0.044 4.044 19 C -0.127 4.127 20 C 0.013 3.987 21 Cl -0.051 7.051 22 C -0.158 4.158 23 C 0.170 3.830 24 F -0.110 7.110 25 C 0.113 3.887 26 C 0.154 3.846 27 H 0.252 0.748 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.028 0.972 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.896 -14.072 -12.619 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.156 4.156 12 C -0.106 4.106 13 C -0.001 4.001 14 N -0.371 5.371 15 C 0.374 3.626 16 O -0.408 6.408 17 C -0.162 4.162 18 C -0.062 4.062 19 C -0.146 4.146 20 C -0.014 4.014 21 Cl -0.022 7.022 22 C -0.178 4.178 23 C 0.149 3.851 24 F -0.088 7.088 25 C -0.009 4.009 26 C 0.027 3.973 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.310 -14.563 -12.511 19.244 hybrid contribution 0.240 0.800 -0.133 0.845 sum -1.070 -13.763 -12.644 18.720 Atomic orbital electron populations 1.69958 1.04887 1.25095 1.56873 1.24799 0.95698 0.97674 1.02149 0.86133 0.78605 0.83522 0.77555 1.21608 1.21703 1.20695 1.19035 0.90420 0.82290 1.44045 0.90380 1.44541 1.01565 0.99650 1.87356 1.21229 0.84254 0.87784 1.01253 1.22478 0.94109 0.99225 0.99765 1.22185 1.00215 0.93405 0.94782 1.22829 0.98409 0.94358 0.84503 1.49665 1.54359 1.15898 1.17130 1.17362 0.78356 0.81869 0.85042 1.90835 1.54061 1.28473 1.67422 1.20152 0.98784 1.01895 0.95351 1.21416 0.98225 0.94135 0.92471 1.21102 0.97112 1.00735 0.95627 1.20826 0.96401 0.97830 0.86378 1.98406 1.93211 1.96496 1.14088 1.20933 1.02956 1.02164 0.91732 1.17398 0.89968 0.89758 0.88015 1.91615 1.75021 1.68334 1.73862 1.23059 0.99983 0.79730 0.98151 1.21137 0.93078 0.85728 0.97343 0.93717 0.93481 0.93762 0.92100 0.91682 0.90148 0.89400 0.83106 0.83357 0.82943 0.89147 0.89712 0.95467 0.93883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.94 10.30 55.49 0.57 -25.37 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.20 29.55 -169.99 -5.02 16.17 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.23 -6.00 10.28 -15.06 -0.15 -6.15 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.60 -14.15 3.41 -170.53 -0.58 -14.73 16 10 C 0.18 4.06 5.39 -2.83 -0.02 4.04 16 11 C -0.12 -2.05 6.40 -25.61 -0.16 -2.21 16 12 C -0.10 -1.58 1.06 -155.22 -0.16 -1.74 16 13 C 0.12 1.61 8.03 -7.48 -0.06 1.55 16 14 N -0.64 -8.82 3.65 -186.93 -0.68 -9.51 16 15 C 0.58 8.96 7.81 -12.43 -0.10 8.87 16 16 O -0.53 -9.94 16.48 5.30 0.09 -9.86 16 17 C -0.16 -2.00 5.84 -104.91 -0.61 -2.61 16 18 C -0.04 -0.43 8.87 -39.20 -0.35 -0.78 16 19 C -0.13 -1.09 9.81 -39.61 -0.39 -1.48 16 20 C 0.01 0.12 6.32 -39.40 -0.25 -0.13 16 21 Cl -0.05 -0.41 28.95 -51.86 -1.50 -1.92 16 22 C -0.16 -1.54 9.79 -39.53 -0.39 -1.92 16 23 C 0.17 2.10 7.25 -38.96 -0.28 1.81 16 24 F -0.11 -1.59 15.84 2.25 0.04 -1.55 16 25 C 0.11 1.46 5.45 -7.33 -0.04 1.42 16 26 C 0.15 2.76 6.70 -3.22 -0.02 2.74 16 27 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 29 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 30 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.15 1.30 5.62 -52.49 -0.30 1.01 16 35 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.09 0.99 7.78 -51.93 -0.40 0.58 16 38 H 0.08 1.13 7.82 -51.93 -0.41 0.72 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.04 0.72 8.00 -51.93 -0.42 0.31 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -31.22 350.99 -9.68 -40.90 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -4.79 Total: -2.56 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -3.08 Total: 3.13 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.69 Total: -49.61 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.22 -9.68 -40.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565498466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.410 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds