Wall clock time and date at job start Tue Mar 31 2020 20:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00154 * 2 1 4 4 H 1.48497 * 109.47218 * 270.00174 * 3 2 1 5 5 H 1.48500 * 109.46750 * 30.00687 * 3 2 1 6 6 H 1.48508 * 109.46817 * 150.00289 * 3 2 1 7 7 C 1.38818 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00098 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99825 * 359.97438 * 7 2 1 10 10 C 1.47150 * 125.58046 * 0.02708 * 9 7 2 11 11 C 1.54626 * 107.37677 * 179.04044 * 10 9 7 12 12 C 1.53509 * 102.70652 * 339.38633 * 11 10 9 13 13 C 1.51779 * 117.00446 * 164.16316 * 12 11 10 14 14 N 1.47395 * 87.51939 * 92.92768 * 13 12 11 15 15 C 1.34769 * 135.85457 * 205.66980 * 14 13 12 16 16 O 1.21578 * 120.00186 * 5.45575 * 15 14 13 17 17 C 1.47640 * 120.00018 * 185.46298 * 15 14 13 18 18 C 1.39694 * 120.15288 * 24.29277 * 17 15 14 19 19 C 1.37787 * 119.89066 * 180.02562 * 18 17 15 20 20 C 1.38612 * 120.20768 * 359.97438 * 19 18 17 21 21 Cl 1.73600 * 119.84830 * 180.02562 * 20 19 18 22 22 C 1.38351 * 120.31135 * 359.97438 * 20 19 18 23 23 C 1.38260 * 120.10485 * 0.02562 * 22 20 19 24 24 F 1.35092 * 120.10619 * 179.97438 * 23 22 20 25 25 C 1.47389 * 88.29099 * 25.92123 * 14 13 12 26 26 C 1.47758 * 125.57980 * 179.97438 * 9 7 2 27 27 H 0.97005 * 119.99923 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.86614 * 59.59284 * 10 9 7 29 29 H 1.09003 * 109.86390 * 298.48906 * 10 9 7 30 30 H 1.09001 * 110.76903 * 221.08145 * 11 10 9 31 31 H 1.09004 * 110.76355 * 97.68691 * 11 10 9 32 32 H 1.08994 * 113.54402 * 338.26927 * 13 12 11 33 33 H 1.09005 * 113.61001 * 207.59877 * 13 12 11 34 34 H 1.08001 * 120.05611 * 0.04285 * 18 17 15 35 35 H 1.08001 * 119.89855 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.95350 * 179.74138 * 22 20 19 37 37 H 1.08997 * 113.54521 * 88.74345 * 25 14 13 38 38 H 1.09004 * 113.54226 * 219.42136 * 25 14 13 39 39 H 1.08996 * 110.40249 * 83.55163 * 26 9 7 40 40 H 1.09002 * 110.40309 * 321.12361 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1390 -2.5312 -0.0006 11 6 -0.4552 -4.0445 -0.0253 12 6 0.8470 -4.6528 -0.5648 13 6 1.0378 -6.1472 -0.3805 14 7 0.4459 -6.3230 -1.7189 15 6 -0.2204 -7.3031 -2.3605 16 8 -0.5374 -8.3140 -1.7640 17 6 -0.5653 -7.1494 -3.7878 18 6 0.1827 -6.2960 -4.6024 19 6 -0.1443 -6.1562 -5.9336 20 6 -1.2127 -6.8600 -6.4670 21 17 -1.6160 -6.6773 -8.1456 22 6 -1.9586 -7.7083 -5.6681 23 6 -1.6419 -7.8583 -4.3307 24 9 -2.3705 -8.6862 -3.5505 25 6 0.9056 -4.9629 -2.0524 26 6 1.9364 -3.7335 -0.0016 27 1 -0.4850 0.8401 0.0004 28 1 -0.5581 -2.0508 -0.8847 29 1 -0.5552 -2.0805 0.9004 30 1 -1.2873 -4.2547 -0.6973 31 1 -0.6660 -4.4117 0.9792 32 1 0.4319 -6.5677 0.4221 33 1 2.0833 -6.4501 -0.3235 34 1 1.0161 -5.7470 -4.1896 35 1 0.4337 -5.4962 -6.5635 36 1 -2.7924 -8.2506 -6.0887 37 1 1.9144 -4.9329 -2.4640 38 1 0.1893 -4.3946 -2.6458 39 1 2.1987 -4.0325 1.0132 40 1 2.8172 -3.7504 -0.6435 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565498466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:06 Heat of formation + Delta-G solvation = -2.185399 kcal Electronic energy + Delta-G solvation = -26625.413031 eV Core-core repulsion = 22575.250155 eV Total energy + Delta-G solvation = -4050.162876 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.13936 -42.09750 -40.41087 -39.23702 -37.56545 -37.32662 -34.13234 -32.76976 -31.80634 -31.07046 -30.11620 -27.51307 -27.24974 -25.75993 -24.57933 -23.84760 -22.12058 -21.06227 -19.90344 -18.93903 -18.57038 -18.35175 -17.94694 -17.25433 -16.87877 -16.70238 -16.52645 -16.44890 -16.08799 -15.58118 -15.25603 -14.95412 -14.68186 -14.36813 -14.31779 -14.12252 -13.75573 -13.71712 -13.51108 -13.28647 -12.86386 -12.75707 -12.74505 -12.48455 -12.25461 -12.13464 -12.00577 -11.93478 -11.81193 -11.67757 -11.22630 -11.02173 -10.64032 -10.25992 -10.02595 -9.73853 -8.82332 -7.78362 -5.12909 -0.64874 -0.11545 0.81697 1.49231 1.51958 1.52875 1.60888 1.61569 2.33950 2.55074 2.95498 3.09108 3.30559 3.42376 3.45444 3.59766 3.77183 3.82356 3.88682 4.04174 4.21386 4.25804 4.27326 4.50998 4.52722 4.63923 4.69918 4.74411 4.76267 4.84818 4.87070 4.89469 4.96002 5.05039 5.18218 5.22960 5.40496 5.54347 5.69653 5.82685 6.25091 6.54176 6.90084 7.16393 7.84390 8.48477 9.32036 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.002959 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.645634 B = 9461.042114 C =10881.549646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.067 4.067 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.268 1.268 7 C -0.232 4.232 8 H 0.089 0.911 9 N -0.624 5.624 10 C 0.191 3.809 11 C -0.104 4.104 12 C -0.100 4.100 13 C 0.127 3.873 14 N -0.634 5.634 15 C 0.581 3.419 16 O -0.575 6.575 17 C -0.177 4.177 18 C -0.038 4.038 19 C -0.116 4.116 20 C 0.014 3.986 21 Cl -0.038 7.038 22 C -0.151 4.151 23 C 0.145 3.855 24 F -0.130 7.130 25 C 0.120 3.880 26 C 0.153 3.847 27 H 0.244 0.756 28 H 0.014 0.986 29 H 0.002 0.998 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.167 0.833 35 H 0.177 0.823 36 H 0.169 0.831 37 H 0.124 0.876 38 H 0.083 0.917 39 H 0.034 0.966 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.063 -14.518 -14.471 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.260 4.260 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.361 4.361 8 H 0.107 0.893 9 N -0.351 5.351 10 C 0.066 3.934 11 C -0.143 4.143 12 C -0.102 4.102 13 C 0.005 3.995 14 N -0.367 5.367 15 C 0.372 3.628 16 O -0.456 6.456 17 C -0.181 4.181 18 C -0.057 4.057 19 C -0.135 4.135 20 C -0.013 4.013 21 Cl -0.009 7.009 22 C -0.171 4.171 23 C 0.124 3.876 24 F -0.109 7.109 25 C -0.002 4.002 26 C 0.028 3.972 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.020 0.980 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.136 0.864 34 H 0.184 0.816 35 H 0.194 0.806 36 H 0.187 0.813 37 H 0.142 0.858 38 H 0.101 0.899 39 H 0.051 0.949 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.691 -15.023 -14.369 20.800 hybrid contribution -0.355 0.942 0.404 1.085 sum 0.336 -14.082 -13.965 19.835 Atomic orbital electron populations 1.70185 1.06320 1.24986 1.58772 1.25587 0.96446 1.00883 1.03094 0.85146 0.77652 0.79524 0.77423 1.21235 1.22920 1.19331 1.19468 0.91138 0.83428 1.42097 0.89347 1.44815 1.02020 1.01172 1.87072 1.20891 0.84157 0.90723 0.97647 1.22261 0.95770 0.95633 1.00607 1.21997 0.97434 0.94118 0.96629 1.22888 1.00060 0.92269 0.84306 1.49639 1.53876 1.15903 1.17309 1.17750 0.77711 0.81351 0.85995 1.90804 1.55876 1.30250 1.68669 1.20106 0.99998 1.03649 0.94313 1.21564 0.98063 0.93345 0.92703 1.21421 0.96629 1.00149 0.95283 1.20954 0.96199 0.97269 0.86907 1.98419 1.93128 1.96361 1.12976 1.21072 1.03288 1.02033 0.90664 1.17692 0.90551 0.90415 0.88909 1.91558 1.75592 1.69129 1.74589 1.23173 1.01733 0.78800 0.96472 1.21309 0.94252 0.83404 0.98269 0.94707 0.96782 0.98015 0.91605 0.91133 0.90646 0.86388 0.81567 0.80588 0.81328 0.85837 0.89888 0.94861 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.47 10.30 21.65 0.22 -55.25 16 2 C -0.07 -3.65 5.49 84.86 0.47 -3.18 16 3 Si 0.97 43.74 29.55 68.60 2.03 45.77 16 4 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.23 -12.00 10.28 84.03 0.86 -11.14 16 8 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.62 -28.96 3.41 -693.42 -2.36 -31.33 16 10 C 0.19 8.88 5.39 86.81 0.47 9.34 16 11 C -0.10 -3.61 6.40 31.32 0.20 -3.41 16 12 C -0.10 -2.82 1.06 -52.62 -0.06 -2.88 16 13 C 0.13 3.04 8.03 83.67 0.67 3.71 16 14 N -0.63 -16.27 3.65 -863.58 -3.15 -19.42 16 15 C 0.58 17.36 7.81 86.73 0.68 18.04 16 16 O -0.57 -21.74 16.48 -3.96 -0.07 -21.80 16 17 C -0.18 -4.29 5.84 -20.05 -0.12 -4.41 16 18 C -0.04 -0.66 8.87 22.51 0.20 -0.46 16 19 C -0.12 -1.62 9.81 22.25 0.22 -1.40 16 20 C 0.01 0.22 6.32 22.39 0.14 0.36 16 21 Cl -0.04 -0.52 28.95 -2.72 -0.08 -0.59 16 22 C -0.15 -2.71 9.79 22.30 0.22 -2.49 16 23 C 0.15 3.53 7.25 22.67 0.16 3.70 16 24 F -0.13 -3.87 15.84 44.97 0.71 -3.16 16 25 C 0.12 2.75 5.45 83.76 0.46 3.20 16 26 C 0.15 5.12 6.70 86.23 0.58 5.70 16 27 H 0.24 13.97 8.31 -92.70 -0.77 13.20 16 28 H 0.01 0.73 7.38 -2.38 -0.02 0.71 16 29 H 0.00 0.09 7.49 -2.39 -0.02 0.07 16 30 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.08 1.93 8.13 -2.39 -0.02 1.91 16 33 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.17 2.26 5.62 -2.91 -0.02 2.24 16 35 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 37 H 0.12 2.10 7.78 -2.39 -0.02 2.08 16 38 H 0.08 1.99 7.82 -2.39 -0.02 1.98 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.92 8.00 -2.39 -0.02 1.90 16 Total: -1.00 -70.50 350.99 3.53 -66.97 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 1.08 Total: 4.13 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 5.15 Total: 14.69 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -5.30 Total: -106.00 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.07 Total: -21.80 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.71 Total: -3.16 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.59 kcal Total: -70.50 3.53 -66.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565498466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.789 kcal (2) G-P(sol) polarization free energy of solvation -70.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds