Wall clock time and date at job start Tue Mar 31 2020 21:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00501 * 2 1 4 4 H 1.48493 * 109.47169 * 270.00527 * 3 2 1 5 5 H 1.48509 * 109.46684 * 30.00121 * 3 2 1 6 6 H 1.48501 * 109.47512 * 149.99976 * 3 2 1 7 7 C 1.38817 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99901 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99738 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99715 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46794 * 188.65608 * 10 9 7 12 12 H 1.08990 * 109.99711 * 314.91795 * 11 10 9 13 13 C 1.54330 * 109.87791 * 193.82391 * 11 10 9 14 14 C 1.55154 * 102.93771 * 218.38990 * 13 11 10 15 15 C 1.54913 * 101.58574 * 35.50722 * 14 13 11 16 16 N 1.47019 * 109.87821 * 76.02102 * 11 10 9 17 17 C 1.34778 * 125.64798 * 298.30481 * 16 11 10 18 18 O 1.21777 * 120.00146 * 2.62030 * 17 16 11 19 19 C 1.41712 * 120.00207 * 182.61962 * 17 16 11 20 20 S 1.75660 * 125.10088 * 352.29151 * 19 17 16 21 21 C 1.75556 * 91.21459 * 179.97438 * 20 19 17 22 22 C 1.34202 * 110.67633 * 359.97438 * 21 20 19 23 23 C 1.37153 * 125.10443 * 171.98570 * 19 17 16 24 24 O 1.37649 * 124.47904 * 0.86975 * 23 19 17 25 25 C 1.43385 * 114.58087 * 162.88594 * 24 23 19 26 26 C 1.53222 * 109.13585 * 46.25252 * 25 24 23 27 27 O 1.38244 * 124.14505 * 180.13950 * 22 21 20 28 28 H 0.97008 * 119.99188 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00134 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46848 * 68.66537 * 10 9 7 31 31 H 1.08993 * 109.47505 * 308.65707 * 10 9 7 32 32 H 1.08999 * 110.71641 * 100.03129 * 13 11 10 33 33 H 1.08999 * 110.72102 * 336.75509 * 13 11 10 34 34 H 1.09006 * 111.00418 * 153.57852 * 14 13 11 35 35 H 1.09001 * 111.00944 * 277.43156 * 14 13 11 36 36 H 1.09001 * 110.36355 * 81.82382 * 15 14 13 37 37 H 1.08998 * 110.36738 * 204.15089 * 15 14 13 38 38 H 1.07994 * 124.66197 * 179.97438 * 21 20 19 39 39 H 1.09004 * 109.52631 * 286.36141 * 25 24 23 40 40 H 1.08993 * 109.58678 * 166.18758 * 25 24 23 41 41 H 1.09006 * 109.52144 * 177.84629 * 26 25 24 42 42 H 1.09001 * 109.57318 * 57.68943 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0776 -4.8114 -0.2185 12 1 0.1976 -4.6762 0.4100 13 6 1.7630 -6.1522 0.1194 14 6 1.2075 -7.1100 -0.9675 15 6 1.1042 -6.1655 -2.1911 16 7 0.6784 -4.8694 -1.6323 17 6 0.0296 -3.8988 -2.3058 18 8 -0.2329 -2.8456 -1.7536 19 6 -0.3470 -4.1038 -3.6564 20 16 0.1265 -5.4805 -4.6393 21 6 -0.7668 -4.8535 -6.0144 22 6 -1.3605 -3.6908 -5.7036 23 6 -1.1408 -3.2600 -4.3907 24 8 -1.6707 -2.0808 -3.9181 25 6 -2.1340 -1.1845 -4.9370 26 6 -2.9672 -1.9694 -5.9555 27 8 -2.1372 -2.9572 -6.5809 28 1 -0.4849 0.8402 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 2.5641 -3.7849 0.9551 31 1 2.7949 -3.6502 -0.8047 32 1 1.4769 -6.4913 1.1150 33 1 2.8463 -6.0630 0.0376 34 1 1.9034 -7.9262 -1.1617 35 1 0.2267 -7.4935 -0.6861 36 1 2.0744 -6.0683 -2.6782 37 1 0.3605 -6.5376 -2.8957 38 1 -0.8300 -5.3370 -6.9780 39 1 -1.2796 -0.7299 -5.4383 40 1 -2.7489 -0.4055 -4.4863 41 1 -3.3546 -1.2873 -6.7123 42 1 -3.7978 -2.4596 -5.4476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569560765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:50 Heat of formation + Delta-G solvation = -50.573297 kcal Electronic energy + Delta-G solvation = -28350.684621 eV Core-core repulsion = 24423.927500 eV Total energy + Delta-G solvation = -3926.757121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.07376 -41.08312 -38.53418 -37.95037 -36.58122 -36.18631 -33.46310 -32.67681 -30.83381 -30.71543 -30.07413 -26.75618 -26.14810 -24.73572 -24.48916 -23.18107 -22.20246 -20.87306 -20.34876 -19.55114 -18.93131 -18.20222 -17.94766 -17.48777 -17.26298 -16.68361 -16.34972 -15.92834 -15.81810 -15.60403 -15.35115 -15.23035 -15.10289 -14.83466 -14.56333 -14.19181 -13.97463 -13.79843 -13.59839 -13.22348 -13.11681 -12.90387 -12.74322 -12.67197 -12.25839 -12.11381 -12.09070 -11.95589 -11.77619 -11.63355 -11.49982 -11.43597 -10.89058 -10.59054 -9.71924 -9.46167 -8.91652 -8.75326 -7.77751 -5.05011 -0.62828 0.33838 0.60424 1.13223 1.38585 1.43095 1.50888 2.05494 2.23214 2.38840 2.51300 2.58980 3.08697 3.48092 3.50441 3.62905 3.66965 3.85703 3.96542 4.03195 4.07075 4.22980 4.29600 4.38687 4.41876 4.43375 4.50136 4.57399 4.59550 4.80864 4.84646 4.89139 4.94120 5.03191 5.16617 5.18153 5.41798 5.48662 5.59252 5.67434 6.04794 6.38046 6.64253 7.36648 7.53492 8.36344 8.60670 9.43791 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.005744 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.592428 B = 4873.833186 C = 7481.294116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.076 4.076 3 Si 0.966 3.034 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.244 4.244 8 H 0.063 0.937 9 N -0.732 5.732 10 C 0.143 3.857 11 C 0.133 3.867 12 H 0.047 0.953 13 C -0.113 4.113 14 C -0.110 4.110 15 C 0.077 3.923 16 N -0.620 5.620 17 C 0.566 3.434 18 O -0.505 6.505 19 C -0.313 4.313 20 S 0.299 5.701 21 C -0.220 4.220 22 C 0.010 3.990 23 C 0.104 3.896 24 O -0.299 6.299 25 C 0.003 3.997 26 C 0.026 3.974 27 O -0.300 6.300 28 H 0.241 0.759 29 H 0.385 0.615 30 H 0.027 0.973 31 H 0.010 0.990 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.212 0.788 39 H 0.070 0.930 40 H 0.136 0.864 41 H 0.163 0.837 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.189 -19.666 -14.250 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.269 4.269 3 Si 0.796 3.204 4 H -0.223 1.223 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.376 4.376 8 H 0.081 0.919 9 N -0.380 5.380 10 C 0.015 3.985 11 C 0.029 3.971 12 H 0.065 0.935 13 C -0.151 4.151 14 C -0.147 4.147 15 C -0.047 4.047 16 N -0.356 5.356 17 C 0.355 3.645 18 O -0.381 6.381 19 C -0.433 4.433 20 S 0.564 5.436 21 C -0.357 4.357 22 C -0.045 4.045 23 C 0.042 3.958 24 O -0.213 6.213 25 C -0.073 4.073 26 C -0.049 4.049 27 O -0.216 6.216 28 H 0.050 0.950 29 H 0.223 0.777 30 H 0.045 0.955 31 H 0.028 0.972 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.144 0.856 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.229 0.771 39 H 0.089 0.911 40 H 0.154 0.846 41 H 0.180 0.820 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.426 -20.140 -13.773 24.441 hybrid contribution -1.081 3.304 -0.104 3.478 sum -2.507 -16.837 -13.876 21.962 Atomic orbital electron populations 1.69984 1.06435 1.24623 1.59001 1.25535 0.96289 1.00669 1.04382 0.85249 0.77914 0.80282 0.76983 1.22327 1.21912 1.19221 1.19533 0.90690 0.86205 1.41204 0.91928 1.42968 1.06631 1.00271 1.88152 1.21192 0.93905 0.86270 0.97103 1.21866 0.96498 0.96992 0.81775 0.93452 1.22654 1.01003 0.90414 1.01059 1.22769 1.03563 0.96836 0.91578 1.22847 1.00791 0.82743 0.98272 1.48437 1.57943 1.17409 1.11849 1.15889 0.79597 0.83679 0.85357 1.91093 1.53282 1.25206 1.68474 1.22747 1.13099 1.06845 1.00574 1.83620 1.48647 1.16245 0.95122 1.26000 1.05136 0.96957 1.07558 1.18336 1.01907 0.95682 0.88601 1.19425 0.95277 0.88451 0.92644 1.87233 1.74727 1.25853 1.33484 1.23967 1.00064 0.92747 0.90486 1.23790 0.91729 0.90985 0.98415 1.86989 1.54909 1.49184 1.30537 0.95012 0.77673 0.95547 0.97233 0.88079 0.89143 0.85649 0.89683 0.89604 0.89298 0.77078 0.91142 0.84601 0.81950 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -66.28 13.06 21.65 0.28 -66.00 16 2 C -0.08 -4.96 5.50 84.86 0.47 -4.50 16 3 Si 0.97 51.67 29.55 68.60 2.03 53.70 16 4 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 5 H -0.29 -15.44 7.11 99.48 0.71 -14.73 16 6 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.24 -15.68 9.99 84.03 0.84 -14.84 16 8 H 0.06 3.87 7.83 -2.91 -0.02 3.84 16 9 N -0.73 -43.84 4.09 -343.45 -1.41 -45.25 16 10 C 0.14 6.56 5.61 86.38 0.48 7.05 16 11 C 0.13 4.76 3.07 45.35 0.14 4.90 16 12 H 0.05 1.94 8.10 -2.39 -0.02 1.92 16 13 C -0.11 -2.40 6.44 31.78 0.20 -2.20 16 14 C -0.11 -1.64 7.08 31.99 0.23 -1.41 16 15 C 0.08 1.65 5.43 86.86 0.47 2.13 16 16 N -0.62 -21.96 3.06 -798.39 -2.45 -24.40 16 17 C 0.57 25.42 7.44 85.10 0.63 26.06 16 18 O -0.51 -29.53 12.18 11.36 0.14 -29.40 16 19 C -0.31 -11.59 6.18 22.87 0.14 -11.45 16 20 S 0.30 6.47 18.52 -56.49 -1.05 5.42 16 21 C -0.22 -4.76 11.17 66.90 0.75 -4.01 16 22 C 0.01 0.30 6.55 21.75 0.14 0.44 16 23 C 0.10 3.94 6.57 22.42 0.15 4.08 16 24 O -0.30 -13.00 9.62 -90.66 -0.87 -13.87 16 25 C 0.00 0.09 7.14 72.06 0.51 0.60 16 26 C 0.03 0.58 7.14 72.06 0.51 1.09 16 27 O -0.30 -7.90 10.77 -113.01 -1.22 -9.12 16 28 H 0.24 16.25 8.31 -92.70 -0.77 15.48 16 29 H 0.38 25.26 5.22 -92.71 -0.48 24.78 16 30 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.09 1.76 7.85 -2.39 -0.02 1.74 16 34 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.64 8.13 -2.39 -0.02 1.62 16 37 H 0.09 1.63 4.96 -18.24 -0.09 1.54 16 38 H 0.21 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 41 H 0.16 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -96.29 349.17 1.63 -94.65 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.50 Total: 26.31 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 5.67 Total: 7.94 kcal Atomic # 7 Polarization: -132.08 SS G_CDS: -3.57 Total: -135.65 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -1.95 Total: -52.38 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.03 Total: 53.70 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.05 Total: 5.42 kcal Total: -96.29 1.63 -94.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569560765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.081 kcal (2) G-P(sol) polarization free energy of solvation -96.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds