Wall clock time and date at job start Tue Mar 31 2020 20:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99761 * 2 1 4 4 O 1.20820 * 120.00155 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99637 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46572 * 180.02562 * 5 3 2 7 7 C 1.36885 * 120.00167 * 91.50061 * 6 5 3 8 8 H 1.08005 * 119.99830 * 233.39949 * 7 6 5 9 9 C 1.39021 * 120.00087 * 53.66962 * 7 6 5 10 10 N 1.31394 * 119.99917 * 199.61465 * 9 7 6 11 11 Si 1.86799 * 119.99922 * 19.61291 * 9 7 6 12 12 H 1.48500 * 109.46932 * 93.64157 * 11 9 7 13 13 H 1.48507 * 109.46793 * 213.63656 * 11 9 7 14 14 H 1.48500 * 109.47122 * 333.63793 * 11 9 7 15 15 C 1.34780 * 119.99946 * 271.49346 * 6 5 3 16 16 O 1.21686 * 119.99742 * 356.43198 * 15 6 5 17 17 C 1.46969 * 119.99717 * 176.43148 * 15 6 5 18 18 C 1.39409 * 120.58720 * 237.74211 * 17 15 6 19 19 C 1.39454 * 118.95266 * 179.97438 * 18 17 15 20 20 C 1.35776 * 120.13748 * 359.97438 * 19 18 17 21 21 N 1.35458 * 121.24511 * 0.02562 * 20 19 18 22 22 C 1.46503 * 119.46572 * 179.97438 * 21 20 19 23 23 C 1.50704 * 109.47069 * 94.45185 * 22 21 20 24 24 O 1.20829 * 119.99539 * 359.97438 * 23 22 21 25 25 O 1.34220 * 119.99897 * 179.97438 * 23 22 21 26 26 C 1.34654 * 121.06226 * 359.72660 * 21 20 19 27 27 O 1.21877 * 120.10964 * 180.26500 * 26 21 20 28 28 H 1.09003 * 109.47040 * 300.00023 * 1 2 3 29 29 H 1.08997 * 109.47138 * 60.00306 * 1 2 3 30 30 H 1.09001 * 109.47195 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46690 * 60.00414 * 5 3 2 32 32 H 1.08995 * 109.47278 * 299.99607 * 5 3 2 33 33 H 0.96999 * 119.99517 * 185.00580 * 10 9 7 34 34 H 1.08001 * 120.52781 * 359.97438 * 18 17 15 35 35 H 1.07998 * 119.93013 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.37480 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47045 * 214.44598 * 22 21 20 38 38 H 1.08995 * 109.47418 * 334.45007 * 22 21 20 39 39 H 0.96704 * 116.99823 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.2050 3.3271 1.1864 8 1 3.7032 4.2605 1.3948 9 6 5.0820 2.7859 2.1195 10 7 5.0193 3.1637 3.3763 11 14 6.3494 1.5215 1.5864 12 1 7.6275 2.2064 1.2660 13 1 6.5714 0.5489 2.6865 14 1 5.8571 0.8039 0.3830 15 6 4.1439 3.3349 -1.1655 16 8 4.0089 2.7425 -2.2199 17 6 4.4840 4.7648 -1.1642 18 6 3.6643 5.6895 -1.8095 19 6 4.0191 7.0379 -1.7864 20 6 5.1466 7.4352 -1.1426 21 7 5.9479 6.5425 -0.5133 22 6 7.1557 7.0140 0.1688 23 6 6.8508 7.2470 1.6262 24 8 5.7387 7.0409 2.0512 25 8 7.8147 7.6836 2.4520 26 6 5.6497 5.2295 -0.5006 27 8 6.3805 4.4421 0.0751 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9558 0.7810 0.8908 33 1 5.6766 2.8418 4.0128 34 1 2.7686 5.3667 -2.3194 35 1 3.3957 7.7677 -2.2815 36 1 5.4095 8.4826 -1.1320 37 1 7.9410 6.2636 0.0774 38 1 7.4894 7.9465 -0.2862 39 1 7.5714 7.8188 3.3781 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574065971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:16 Heat of formation + Delta-G solvation = -166.994058 kcal Electronic energy + Delta-G solvation = -30894.387723 eV Core-core repulsion = 26383.996254 eV Total energy + Delta-G solvation = -4510.391469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23124 -39.94689 -39.61775 -38.35884 -36.39345 -35.98754 -35.82786 -34.65611 -34.08575 -31.85506 -29.99927 -28.71216 -28.57461 -26.55160 -24.95061 -23.81009 -23.05013 -21.40015 -20.83600 -19.41793 -18.12244 -17.97117 -17.25546 -17.09584 -16.95056 -16.52759 -16.39086 -15.82302 -15.61799 -15.46930 -15.20697 -14.92627 -14.40162 -14.16765 -13.94895 -13.53609 -13.09718 -12.94829 -12.86545 -12.66739 -12.41601 -12.33166 -11.94708 -11.75854 -11.69198 -11.53520 -11.32869 -11.28548 -10.81951 -10.58998 -10.53913 -10.29433 -9.97777 -9.69881 -9.67488 -9.51736 -9.08650 -8.63288 -7.64646 -7.46342 -6.32305 -4.05369 1.02000 2.33343 2.38523 2.49887 2.94677 3.07818 3.21260 3.30709 3.38028 3.50379 3.76090 4.21481 4.35003 4.48032 4.63542 4.67737 5.07450 5.11858 5.20603 5.36182 5.41054 5.43984 5.49067 5.53320 5.56746 5.74913 5.84375 5.94418 6.10422 6.26676 6.36557 6.61795 6.62479 6.83358 6.91875 7.37184 7.42056 7.98910 8.09784 8.39976 8.48163 8.61875 9.04738 9.34687 9.64531 10.77809 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.005260 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.818462 B = 5322.026174 C = 6433.621798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.449 3.551 4 O -0.493 6.493 5 C 0.116 3.884 6 N -0.433 5.433 7 C -0.328 4.328 8 H 0.094 0.906 9 C 0.093 3.907 10 N -0.853 5.853 11 Si 0.871 3.129 12 H -0.266 1.266 13 H -0.293 1.293 14 H -0.260 1.260 15 C 0.561 3.439 16 O -0.588 6.588 17 C -0.186 4.186 18 C 0.001 3.999 19 C -0.222 4.222 20 C 0.129 3.871 21 N -0.491 5.491 22 C 0.108 3.892 23 C 0.455 3.545 24 O -0.473 6.473 25 O -0.521 6.521 26 C 0.540 3.460 27 O -0.492 6.492 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.271 0.729 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.156 0.844 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.169 8.383 -6.119 10.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.290 3.710 4 O -0.379 6.379 5 C -0.009 4.009 6 N -0.153 5.153 7 C -0.455 4.455 8 H 0.112 0.888 9 C -0.115 4.115 10 N -0.487 5.487 11 Si 0.697 3.303 12 H -0.192 1.192 13 H -0.219 1.219 14 H -0.184 1.184 15 C 0.351 3.649 16 O -0.473 6.473 17 C -0.193 4.193 18 C -0.022 4.022 19 C -0.245 4.245 20 C 0.003 3.997 21 N -0.205 5.205 22 C -0.016 4.016 23 C 0.293 3.707 24 O -0.356 6.356 25 O -0.333 6.333 26 C 0.339 3.661 27 O -0.367 6.367 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.174 0.826 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 2.188 7.640 -6.258 10.116 hybrid contribution 0.106 -0.205 0.869 0.899 sum 2.294 7.436 -5.389 9.465 Atomic orbital electron populations 1.23118 0.77746 1.02738 1.02165 1.86534 1.22520 1.34629 1.84943 1.24939 0.93025 0.81098 0.71985 1.90597 1.66714 1.36315 1.44230 1.21512 0.85846 0.88570 1.04944 1.43130 1.57619 1.08154 1.06365 1.18734 1.26830 1.08191 0.91719 0.88827 1.25353 0.95668 0.96539 0.93964 1.69829 1.33020 1.44245 1.01607 0.86979 0.84319 0.80628 0.78344 1.19165 1.21938 1.18439 1.17640 0.77989 0.85816 0.83470 1.90671 1.56514 1.68364 1.31773 1.20763 0.98467 0.95457 1.04604 1.21658 0.96971 0.91866 0.91687 1.20403 0.98968 0.96518 1.08651 1.21808 0.91159 0.94735 0.91994 1.45152 1.21910 1.08900 1.44513 1.21115 0.89267 1.04338 0.86852 1.23522 0.83085 0.74282 0.89810 1.90902 1.23423 1.44491 1.76802 1.84419 1.44026 1.79383 1.25501 1.16837 0.87471 0.80079 0.81701 1.90916 1.50415 1.52196 1.43175 0.92256 0.92432 0.88807 0.87313 0.87311 0.91918 0.84848 0.83740 0.82629 0.84524 0.85240 0.72777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.09 10.57 -39.26 -0.41 -7.50 16 3 C 0.45 10.27 8.02 36.01 0.29 10.56 16 4 O -0.49 -12.50 16.17 -18.74 -0.30 -12.81 16 5 C 0.12 2.77 4.13 -5.19 -0.02 2.75 16 6 N -0.43 -11.45 1.32 -117.47 -0.15 -11.61 16 7 C -0.33 -9.37 6.62 -15.01 -0.10 -9.47 16 8 H 0.09 3.00 7.96 -52.48 -0.42 2.58 16 9 C 0.09 2.66 4.75 -17.45 -0.08 2.58 16 10 N -0.85 -25.26 13.95 55.50 0.77 -24.49 16 11 Si 0.87 22.23 25.09 -169.99 -4.26 17.96 16 12 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.26 -6.32 5.56 56.52 0.31 -6.01 16 15 C 0.56 14.41 6.78 -12.72 -0.09 14.32 16 16 O -0.59 -15.60 16.69 5.20 0.09 -15.51 16 17 C -0.19 -4.16 4.96 -104.50 -0.52 -4.68 16 18 C 0.00 0.01 9.91 -38.69 -0.38 -0.37 16 19 C -0.22 -2.90 9.99 -40.01 -0.40 -3.30 16 20 C 0.13 1.58 10.25 -16.83 -0.17 1.41 16 21 N -0.49 -7.82 2.12 -120.60 -0.26 -8.08 16 22 C 0.11 1.35 5.87 -5.19 -0.03 1.32 16 23 C 0.45 6.97 8.36 36.01 0.30 7.27 16 24 O -0.47 -9.79 17.08 -18.75 -0.32 -10.11 16 25 O -0.52 -6.18 13.42 -39.23 -0.53 -6.70 16 26 C 0.54 11.70 6.56 -14.89 -0.10 11.61 16 27 O -0.49 -12.29 12.39 5.03 0.06 -12.22 16 28 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 29 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.11 2.44 7.41 -51.93 -0.38 2.06 16 32 H 0.11 2.52 5.38 -51.93 -0.28 2.24 16 33 H 0.27 7.51 8.32 -40.82 -0.34 7.17 16 34 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 35 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.16 1.08 7.97 -52.49 -0.42 0.66 16 37 H 0.14 1.75 7.53 -51.93 -0.39 1.36 16 38 H 0.13 0.86 7.92 -51.93 -0.41 0.45 16 39 H 0.41 3.58 9.10 45.56 0.41 3.99 16 LS Contribution 347.41 15.07 5.24 5.24 Total: -1.00 -41.46 347.41 -3.54 -44.99 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -3.22 Total: 5.24 kcal Atomic # 6 Polarization: 35.83 SS G_CDS: -0.24 Total: 35.59 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.36 Total: -44.18 kcal Atomic # 8 Polarization: -63.44 SS G_CDS: -1.42 Total: -64.85 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.26 Total: 17.96 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -41.46 -3.54 -44.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574065971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.000 kcal (2) G-P(sol) polarization free energy of solvation -41.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds