Wall clock time and date at job start Tue Mar 31 2020 20:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99761 * 2 1 4 4 O 1.20820 * 120.00155 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99637 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46572 * 180.02562 * 5 3 2 7 7 C 1.36885 * 120.00167 * 91.50061 * 6 5 3 8 8 H 1.08005 * 119.99830 * 233.39949 * 7 6 5 9 9 C 1.39021 * 120.00087 * 53.66962 * 7 6 5 10 10 N 1.31394 * 119.99917 * 199.61465 * 9 7 6 11 11 Si 1.86799 * 119.99922 * 19.61291 * 9 7 6 12 12 H 1.48500 * 109.46932 * 93.64157 * 11 9 7 13 13 H 1.48507 * 109.46793 * 213.63656 * 11 9 7 14 14 H 1.48500 * 109.47122 * 333.63793 * 11 9 7 15 15 C 1.34780 * 119.99946 * 271.49346 * 6 5 3 16 16 O 1.21686 * 119.99742 * 356.43198 * 15 6 5 17 17 C 1.46969 * 119.99717 * 176.43148 * 15 6 5 18 18 C 1.39409 * 120.58720 * 237.74211 * 17 15 6 19 19 C 1.39454 * 118.95266 * 179.97438 * 18 17 15 20 20 C 1.35776 * 120.13748 * 359.97438 * 19 18 17 21 21 N 1.35458 * 121.24511 * 0.02562 * 20 19 18 22 22 C 1.46503 * 119.46572 * 179.97438 * 21 20 19 23 23 C 1.50704 * 109.47069 * 94.45185 * 22 21 20 24 24 O 1.20829 * 119.99539 * 359.97438 * 23 22 21 25 25 O 1.34220 * 119.99897 * 179.97438 * 23 22 21 26 26 C 1.34654 * 121.06226 * 359.72660 * 21 20 19 27 27 O 1.21877 * 120.10964 * 180.26500 * 26 21 20 28 28 H 1.09003 * 109.47040 * 300.00023 * 1 2 3 29 29 H 1.08997 * 109.47138 * 60.00306 * 1 2 3 30 30 H 1.09001 * 109.47195 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46690 * 60.00414 * 5 3 2 32 32 H 1.08995 * 109.47278 * 299.99607 * 5 3 2 33 33 H 0.96999 * 119.99517 * 185.00580 * 10 9 7 34 34 H 1.08001 * 120.52781 * 359.97438 * 18 17 15 35 35 H 1.07998 * 119.93013 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.37480 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47045 * 214.44598 * 22 21 20 38 38 H 1.08995 * 109.47418 * 334.45007 * 22 21 20 39 39 H 0.96704 * 116.99823 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.2050 3.3271 1.1864 8 1 3.7032 4.2605 1.3948 9 6 5.0820 2.7859 2.1195 10 7 5.0193 3.1637 3.3763 11 14 6.3494 1.5215 1.5864 12 1 7.6275 2.2064 1.2660 13 1 6.5714 0.5489 2.6865 14 1 5.8571 0.8039 0.3830 15 6 4.1439 3.3349 -1.1655 16 8 4.0089 2.7425 -2.2199 17 6 4.4840 4.7648 -1.1642 18 6 3.6643 5.6895 -1.8095 19 6 4.0191 7.0379 -1.7864 20 6 5.1466 7.4352 -1.1426 21 7 5.9479 6.5425 -0.5133 22 6 7.1557 7.0140 0.1688 23 6 6.8508 7.2470 1.6262 24 8 5.7387 7.0409 2.0512 25 8 7.8147 7.6836 2.4520 26 6 5.6497 5.2295 -0.5006 27 8 6.3805 4.4421 0.0751 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9558 0.7810 0.8908 33 1 5.6766 2.8418 4.0128 34 1 2.7686 5.3667 -2.3194 35 1 3.3957 7.7677 -2.2815 36 1 5.4095 8.4826 -1.1320 37 1 7.9410 6.2636 0.0774 38 1 7.4894 7.9465 -0.2862 39 1 7.5714 7.8188 3.3781 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574065971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:15 Heat of formation + Delta-G solvation = -200.290311 kcal Electronic energy + Delta-G solvation = -30895.831557 eV Core-core repulsion = 26383.996254 eV Total energy + Delta-G solvation = -4511.835303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.57149 -41.66655 -40.95102 -40.11017 -37.87043 -37.58184 -37.13180 -36.63118 -35.41526 -33.98859 -31.45846 -30.20577 -29.84054 -28.00591 -26.91988 -25.29750 -24.39246 -22.73922 -22.37572 -21.26749 -19.81003 -19.22385 -18.95609 -18.64383 -18.40764 -17.91948 -17.72540 -17.44586 -17.22672 -16.96635 -16.73025 -16.70571 -15.89698 -15.78775 -15.44525 -15.26539 -14.70183 -14.63816 -14.35103 -14.11635 -14.07494 -13.59978 -13.33210 -13.29951 -13.13954 -12.98141 -12.92938 -12.86592 -12.54501 -12.53858 -11.98708 -11.84517 -11.83066 -11.59962 -11.33136 -11.04392 -10.84200 -10.62789 -9.71389 -8.81391 -8.49691 -6.24123 -0.28396 1.05437 1.12097 1.17223 1.22928 1.26979 1.36632 1.41356 1.50214 2.04701 2.13412 2.26010 2.57660 2.88360 3.03071 3.65895 3.80277 3.90278 3.96316 4.02519 4.11988 4.18348 4.23778 4.27317 4.29231 4.30346 4.33671 4.48459 4.63228 4.95434 5.08956 5.23930 5.34601 5.40488 5.59726 5.67718 6.03825 6.07642 6.12363 6.70548 6.91439 6.98479 7.17172 7.24457 7.61404 8.65429 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.005260 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.818462 B = 5322.026174 C = 6433.621798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.454 3.546 4 O -0.526 6.526 5 C 0.108 3.892 6 N -0.449 5.449 7 C -0.306 4.306 8 H 0.045 0.955 9 C 0.060 3.940 10 N -0.896 5.896 11 Si 0.921 3.079 12 H -0.282 1.282 13 H -0.277 1.277 14 H -0.247 1.247 15 C 0.558 3.442 16 O -0.610 6.610 17 C -0.274 4.274 18 C 0.029 3.971 19 C -0.234 4.234 20 C 0.162 3.838 21 N -0.490 5.490 22 C 0.104 3.896 23 C 0.459 3.541 24 O -0.538 6.538 25 O -0.506 6.506 26 C 0.531 3.469 27 O -0.548 6.548 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.142 0.858 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.274 0.726 34 H 0.135 0.865 35 H 0.197 0.803 36 H 0.230 0.770 37 H 0.132 0.868 38 H 0.205 0.795 39 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 10.506 -7.742 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.296 3.704 4 O -0.414 6.414 5 C -0.017 4.017 6 N -0.169 5.169 7 C -0.433 4.433 8 H 0.063 0.937 9 C -0.145 4.145 10 N -0.533 5.533 11 Si 0.745 3.255 12 H -0.208 1.208 13 H -0.203 1.203 14 H -0.171 1.171 15 C 0.349 3.651 16 O -0.497 6.497 17 C -0.281 4.281 18 C 0.006 3.994 19 C -0.256 4.256 20 C 0.036 3.964 21 N -0.200 5.200 22 C -0.018 4.018 23 C 0.300 3.700 24 O -0.427 6.427 25 O -0.319 6.319 26 C 0.332 3.668 27 O -0.429 6.429 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.152 0.848 35 H 0.214 0.786 36 H 0.246 0.754 37 H 0.150 0.850 38 H 0.222 0.778 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 2.668 9.779 -7.889 12.845 hybrid contribution -0.127 -0.627 1.254 1.408 sum 2.541 9.152 -6.635 11.586 Atomic orbital electron populations 1.23568 0.74815 1.05910 1.02209 1.86494 1.25205 1.32192 1.84052 1.24629 0.92745 0.81650 0.71339 1.90575 1.67287 1.37597 1.45946 1.21535 0.87095 0.87532 1.05523 1.43184 1.58758 1.08989 1.05965 1.18069 1.26178 1.06903 0.92188 0.93746 1.25791 0.96679 0.98272 0.93723 1.69887 1.34243 1.46604 1.02556 0.86209 0.81445 0.78977 0.78838 1.20794 1.20319 1.17085 1.18287 0.76499 0.87473 0.82797 1.90604 1.57435 1.69520 1.32120 1.20646 1.01918 0.94575 1.10919 1.22065 0.95436 0.93645 0.88235 1.20986 1.00287 0.94940 1.09402 1.23068 0.89007 0.96975 0.87395 1.45186 1.23171 1.07844 1.43844 1.21651 0.87441 1.07368 0.85339 1.24084 0.82314 0.72501 0.91069 1.90901 1.26094 1.47567 1.78098 1.84391 1.42701 1.78360 1.26473 1.16801 0.86970 0.81846 0.81169 1.90842 1.52117 1.54126 1.45807 0.92547 0.92168 0.84028 0.86261 0.87030 0.91634 0.84759 0.78607 0.75389 0.85000 0.77799 0.71170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.98 16 2 O -0.36 -13.75 10.57 -51.41 -0.54 -14.30 16 3 C 0.45 21.27 8.02 71.24 0.57 21.85 16 4 O -0.53 -27.58 16.17 21.98 0.36 -27.22 16 5 C 0.11 5.30 4.13 85.64 0.35 5.65 16 6 N -0.45 -24.86 1.32 -643.80 -0.85 -25.70 16 7 C -0.31 -18.51 6.62 84.09 0.56 -17.95 16 8 H 0.04 3.09 7.96 -2.91 -0.02 3.07 16 9 C 0.06 3.57 4.75 84.95 0.40 3.98 16 10 N -0.90 -55.62 13.95 21.68 0.30 -55.32 16 11 Si 0.92 47.58 25.09 68.60 1.72 49.30 16 12 H -0.28 -15.16 7.11 99.48 0.71 -14.45 16 13 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 14 H -0.25 -12.05 5.56 99.48 0.55 -11.50 16 15 C 0.56 29.98 6.78 86.53 0.59 30.57 16 16 O -0.61 -33.62 16.69 -4.30 -0.07 -33.70 16 17 C -0.27 -12.66 4.96 -19.79 -0.10 -12.75 16 18 C 0.03 1.02 9.91 22.85 0.23 1.25 16 19 C -0.23 -5.16 9.99 21.99 0.22 -4.94 16 20 C 0.16 3.13 10.25 83.56 0.86 3.99 16 21 N -0.49 -14.51 2.12 -653.66 -1.38 -15.89 16 22 C 0.10 2.27 5.87 85.63 0.50 2.77 16 23 C 0.46 13.39 8.36 71.24 0.60 13.98 16 24 O -0.54 -22.53 17.08 21.96 0.37 -22.16 16 25 O -0.51 -11.02 13.42 -51.32 -0.69 -11.71 16 26 C 0.53 23.47 6.56 85.18 0.56 24.03 16 27 O -0.55 -28.61 12.39 -4.92 -0.06 -28.67 16 28 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 29 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 30 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.12 5.50 7.41 -2.39 -0.02 5.48 16 32 H 0.11 5.31 5.38 -2.39 -0.01 5.29 16 33 H 0.27 15.85 8.32 -92.71 -0.77 15.08 16 34 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 35 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.23 1.13 7.97 -2.91 -0.02 1.10 16 37 H 0.13 3.16 7.53 -2.39 -0.02 3.14 16 38 H 0.21 1.29 7.92 -2.39 -0.02 1.27 16 39 H 0.43 6.87 9.10 -74.05 -0.67 6.19 16 Total: -1.00 -102.34 347.41 5.99 -96.34 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.30 Total: 14.63 kcal Atomic # 6 Polarization: 67.87 SS G_CDS: 6.53 Total: 74.40 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -1.93 Total: -96.91 kcal Atomic # 8 Polarization: -137.13 SS G_CDS: -0.63 Total: -137.76 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.72 Total: 49.30 kcal Total: -102.34 5.99 -96.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574065971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.946 kcal (2) G-P(sol) polarization free energy of solvation -102.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds