Wall clock time and date at job start Tue Mar 31 2020 21:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47025 * 73.28935 * 3 2 1 5 5 N 1.46497 * 109.47410 * 313.28642 * 3 2 1 6 6 C 1.34776 * 120.00100 * 87.12581 * 5 3 2 7 7 O 1.21281 * 119.99679 * 0.02562 * 6 5 3 8 8 C 1.50696 * 120.00358 * 180.02562 * 6 5 3 9 9 H 1.09006 * 109.47171 * 39.99554 * 8 6 5 10 10 N 1.46900 * 109.47435 * 160.00064 * 8 6 5 11 11 C 1.53005 * 109.47053 * 280.00016 * 8 6 5 12 12 C 1.52998 * 109.47477 * 174.99753 * 11 8 6 13 13 C 1.50693 * 109.47415 * 179.97438 * 12 11 8 14 14 H 1.08006 * 119.99625 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00516 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99611 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00573 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47229 * 59.99411 * 17 15 13 19 19 H 1.48496 * 109.47529 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46571 * 299.99927 * 17 15 13 21 21 C 1.50707 * 109.46852 * 193.28808 * 3 2 1 22 22 C 1.38227 * 119.99981 * 92.88759 * 21 3 2 23 23 C 1.38195 * 120.03610 * 180.02562 * 22 21 3 24 24 C 1.38383 * 120.04077 * 359.97438 * 23 22 21 25 25 Cl 1.73608 * 119.99928 * 179.97438 * 24 23 22 26 26 C 1.38291 * 120.00044 * 0.02562 * 24 23 22 27 27 C 1.38441 * 119.99659 * 272.60672 * 21 3 2 28 28 F 1.35106 * 120.02344 * 0.02562 * 27 21 3 29 29 H 4.18734 * 15.03912 * 0.02562 * 4 2 1 30 30 H 0.97003 * 120.00376 * 267.13398 * 5 3 2 31 31 H 1.00902 * 111.00097 * 59.99793 * 10 8 6 32 32 H 1.00900 * 110.99786 * 183.94984 * 10 8 6 33 33 H 1.09000 * 109.46985 * 54.99889 * 11 8 6 34 34 H 1.09002 * 109.46991 * 294.99894 * 11 8 6 35 35 H 1.09009 * 109.46403 * 59.99829 * 12 11 8 36 36 H 1.09000 * 109.46649 * 300.00282 * 12 11 8 37 37 H 0.96993 * 120.00367 * 180.02562 * 16 15 13 38 38 H 1.08001 * 119.97858 * 359.97438 * 22 21 3 39 39 H 1.08003 * 119.97891 * 179.97438 * 23 22 21 40 40 H 1.07994 * 120.02133 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.2947 -0.9842 5 7 3.1348 -0.9461 1.0054 6 6 3.3049 -2.2436 0.6828 7 8 3.0537 -2.6272 -0.4400 8 6 3.8072 -3.2177 1.7172 9 1 3.3431 -2.9981 2.6787 10 7 3.4635 -4.5863 1.3087 11 6 5.3266 -3.0894 1.8431 12 6 5.8219 -3.9871 2.9788 13 6 7.3184 -3.8613 3.1024 14 1 7.8620 -3.2061 2.4377 15 6 7.9939 -4.5824 4.0640 16 7 7.3319 -5.3798 4.8737 17 14 9.8489 -4.4259 4.2178 18 1 10.2038 -3.0144 4.5126 19 1 10.3296 -5.2972 5.3199 20 1 10.4879 -4.8410 2.9432 21 6 3.1477 1.3837 0.3266 22 6 3.4347 1.7237 1.6353 23 6 3.8943 2.9919 1.9357 24 6 4.0681 3.9228 0.9266 25 17 4.6449 5.5159 1.3053 26 6 3.7814 3.5844 -0.3832 27 6 3.3265 2.3119 -0.6849 28 9 3.0510 1.9784 -1.9649 29 1 -1.0500 0.0004 -0.0004 30 1 3.3360 -0.6392 1.9034 31 1 3.8823 -4.8141 0.4194 32 1 3.7325 -5.2531 2.0165 33 1 5.5871 -2.0533 2.0592 34 1 5.7958 -3.3946 0.9078 35 1 5.5613 -5.0233 2.7627 36 1 5.3526 -3.6819 3.9141 37 1 7.8070 -5.8869 5.5505 38 1 3.2990 0.9980 2.4236 39 1 4.1179 3.2566 2.9586 40 1 3.9166 4.3108 -1.1709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574505401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:13 Heat of formation + Delta-G solvation = -14.148022 kcal Electronic energy + Delta-G solvation = -25754.236065 eV Core-core repulsion = 21703.554451 eV Total energy + Delta-G solvation = -4050.681614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.35772 -40.38517 -39.32966 -37.15500 -36.02950 -35.30757 -32.91495 -32.66092 -31.45111 -31.13557 -29.93147 -27.57658 -26.00088 -24.03366 -23.32974 -22.39225 -20.86692 -20.00674 -18.70319 -18.38331 -17.53078 -17.19559 -16.54253 -16.22212 -16.12351 -15.70336 -15.23113 -15.10724 -14.80007 -14.50934 -14.13915 -13.99117 -13.92480 -13.79702 -13.59590 -13.18080 -12.91764 -12.50386 -12.21439 -11.99822 -11.75203 -11.73409 -11.47274 -11.13154 -10.95418 -10.84125 -10.72651 -10.45174 -10.03449 -9.97418 -9.50581 -9.44507 -9.34963 -9.26793 -9.11716 -8.46658 -8.24495 -6.11303 -4.14691 0.39769 0.58571 1.54228 2.34100 2.59585 2.77206 2.94221 3.26674 3.29370 3.31833 3.34235 3.73145 4.06299 4.13226 4.33120 4.37108 4.46049 4.63841 4.81705 5.01424 5.12283 5.20857 5.24901 5.35629 5.42466 5.50694 5.60152 5.64946 5.69913 5.72460 6.15505 6.22054 6.25874 6.46300 6.82227 7.29699 7.41530 7.46973 7.53275 7.59608 7.84954 7.86351 8.26947 8.30346 8.91053 9.50449 10.99534 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.009490 B = 0.002990 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.732481 B = 9361.787537 C =11582.965081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.198 4.198 3 C 0.303 3.697 4 H 0.123 0.877 5 N -0.728 5.728 6 C 0.530 3.470 7 O -0.528 6.528 8 C 0.077 3.923 9 H 0.098 0.902 10 N -0.830 5.830 11 C -0.138 4.138 12 C 0.025 3.975 13 C -0.525 4.525 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.118 4.118 22 C -0.066 4.066 23 C -0.112 4.112 24 C -0.005 4.005 25 Cl -0.054 7.054 26 C -0.144 4.144 27 C 0.131 3.869 28 F -0.124 7.124 29 H 0.221 0.779 30 H 0.403 0.597 31 H 0.346 0.654 32 H 0.356 0.644 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.018 0.982 36 H 0.019 0.981 37 H 0.262 0.738 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.039 19.598 -6.642 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.200 4.200 3 C 0.198 3.802 4 H 0.140 0.860 5 N -0.383 5.383 6 C 0.317 3.683 7 O -0.402 6.402 8 C -0.038 4.038 9 H 0.116 0.884 10 N -0.363 5.363 11 C -0.178 4.178 12 C -0.012 4.012 13 C -0.564 4.564 14 H 0.073 0.927 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.120 4.120 22 C -0.084 4.084 23 C -0.131 4.131 24 C -0.032 4.032 25 Cl -0.025 7.025 26 C -0.163 4.163 27 C 0.111 3.889 28 F -0.103 7.103 29 H 0.237 0.763 30 H 0.241 0.759 31 H 0.160 0.840 32 H 0.171 0.829 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.883 19.527 -7.322 24.003 hybrid contribution 1.999 0.175 0.459 2.059 sum -9.884 19.702 -6.863 23.086 Atomic orbital electron populations 1.24923 0.95769 0.98930 0.99225 1.22972 0.94013 1.01463 1.01528 1.16104 0.83819 0.84928 0.95358 0.85958 1.46140 1.68903 1.08464 1.14785 1.21042 0.75598 0.81941 0.89690 1.90658 1.49577 1.77591 1.22333 1.21469 0.96760 0.89525 0.96064 0.88398 1.58734 1.67050 1.01728 1.08766 1.22406 0.91310 1.02059 1.02026 1.19095 0.96122 0.94090 0.91899 1.21136 0.92378 1.25970 1.16873 0.92742 1.25005 0.98464 0.95136 0.95637 1.69933 1.35834 1.27556 1.19856 0.86644 0.85507 0.78073 0.77732 1.20198 1.21204 1.20205 1.19861 1.03000 0.95363 0.93750 1.20800 0.96368 0.96128 0.95118 1.21135 0.99948 0.92253 0.99747 1.20655 1.00849 0.87947 0.93773 1.98403 1.86949 1.22669 1.94472 1.20951 1.02808 0.95912 0.96668 1.17135 0.99978 0.92983 0.78826 1.91562 1.91063 1.92591 1.35055 0.76267 0.75929 0.84042 0.82871 0.92448 0.92526 0.96376 0.96303 0.92792 0.83698 0.83518 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 19.25 29.55 0.57 -1.30 16 2 C -0.20 -2.52 12.85 -37.12 -0.48 -2.99 16 3 C 0.30 3.75 2.45 -71.87 -0.18 3.57 16 4 H 0.12 1.72 7.08 -51.93 -0.37 1.35 16 5 N -0.73 -9.18 4.94 -57.70 -0.29 -9.47 16 6 C 0.53 8.52 7.05 -10.99 -0.08 8.44 16 7 O -0.53 -10.13 15.88 5.56 0.09 -10.04 16 8 C 0.08 1.26 3.21 -68.86 -0.22 1.03 16 9 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 10 N -0.83 -13.94 8.94 -5.65 -0.05 -13.99 16 11 C -0.14 -2.59 4.78 -26.73 -0.13 -2.72 16 12 C 0.03 0.59 4.74 -27.89 -0.13 0.46 16 13 C -0.53 -14.09 9.11 -34.44 -0.31 -14.40 16 14 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.59 13.29 55.43 0.74 -24.86 16 17 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.12 -1.21 5.01 -104.55 -0.52 -1.74 16 22 C -0.07 -0.55 9.22 -39.60 -0.37 -0.92 16 23 C -0.11 -0.86 9.83 -39.54 -0.39 -1.25 16 24 C -0.01 -0.04 6.32 -39.51 -0.25 -0.29 16 25 Cl -0.05 -0.42 28.96 -51.86 -1.50 -1.92 16 26 C -0.14 -1.23 9.81 -39.48 -0.39 -1.62 16 27 C 0.13 1.33 7.24 -39.42 -0.29 1.05 16 28 F -0.12 -1.40 16.52 2.25 0.04 -1.36 16 29 H 0.22 1.56 7.80 -54.09 -0.42 1.14 16 30 H 0.40 4.06 6.30 -40.82 -0.26 3.81 16 31 H 0.35 5.90 8.58 -39.29 -0.34 5.57 16 32 H 0.36 5.96 7.55 -39.29 -0.30 5.67 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.02 0.44 6.87 -51.92 -0.36 0.09 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.15 0.96 6.16 -52.49 -0.32 0.64 16 39 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -31.93 370.79 -8.10 -40.03 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -4.44 Total: 11.26 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -3.25 Total: -11.15 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.40 Total: -48.32 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.93 -8.10 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574505401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.881 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds