Wall clock time and date at job start Tue Mar 31 2020 21:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47025 * 73.28935 * 3 2 1 5 5 N 1.46497 * 109.47410 * 313.28642 * 3 2 1 6 6 C 1.34776 * 120.00100 * 87.12581 * 5 3 2 7 7 O 1.21281 * 119.99679 * 0.02562 * 6 5 3 8 8 C 1.50696 * 120.00358 * 180.02562 * 6 5 3 9 9 H 1.09006 * 109.47171 * 39.99554 * 8 6 5 10 10 N 1.46900 * 109.47435 * 160.00064 * 8 6 5 11 11 C 1.53005 * 109.47053 * 280.00016 * 8 6 5 12 12 C 1.52998 * 109.47477 * 174.99753 * 11 8 6 13 13 C 1.50693 * 109.47415 * 179.97438 * 12 11 8 14 14 H 1.08006 * 119.99625 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00516 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99611 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00573 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47229 * 59.99411 * 17 15 13 19 19 H 1.48496 * 109.47529 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46571 * 299.99927 * 17 15 13 21 21 C 1.50707 * 109.46852 * 193.28808 * 3 2 1 22 22 C 1.38227 * 119.99981 * 92.88759 * 21 3 2 23 23 C 1.38195 * 120.03610 * 180.02562 * 22 21 3 24 24 C 1.38383 * 120.04077 * 359.97438 * 23 22 21 25 25 Cl 1.73608 * 119.99928 * 179.97438 * 24 23 22 26 26 C 1.38291 * 120.00044 * 0.02562 * 24 23 22 27 27 C 1.38441 * 119.99659 * 272.60672 * 21 3 2 28 28 F 1.35106 * 120.02344 * 0.02562 * 27 21 3 29 29 H 4.18734 * 15.03912 * 0.02562 * 4 2 1 30 30 H 0.97003 * 120.00376 * 267.13398 * 5 3 2 31 31 H 1.00902 * 111.00097 * 59.99793 * 10 8 6 32 32 H 1.00900 * 110.99786 * 183.94984 * 10 8 6 33 33 H 1.09000 * 109.46985 * 54.99889 * 11 8 6 34 34 H 1.09002 * 109.46991 * 294.99894 * 11 8 6 35 35 H 1.09009 * 109.46403 * 59.99829 * 12 11 8 36 36 H 1.09000 * 109.46649 * 300.00282 * 12 11 8 37 37 H 0.96993 * 120.00367 * 180.02562 * 16 15 13 38 38 H 1.08001 * 119.97858 * 359.97438 * 22 21 3 39 39 H 1.08003 * 119.97891 * 179.97438 * 23 22 21 40 40 H 1.07994 * 120.02133 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.2947 -0.9842 5 7 3.1348 -0.9461 1.0054 6 6 3.3049 -2.2436 0.6828 7 8 3.0537 -2.6272 -0.4400 8 6 3.8072 -3.2177 1.7172 9 1 3.3431 -2.9981 2.6787 10 7 3.4635 -4.5863 1.3087 11 6 5.3266 -3.0894 1.8431 12 6 5.8219 -3.9871 2.9788 13 6 7.3184 -3.8613 3.1024 14 1 7.8620 -3.2061 2.4377 15 6 7.9939 -4.5824 4.0640 16 7 7.3319 -5.3798 4.8737 17 14 9.8489 -4.4259 4.2178 18 1 10.2038 -3.0144 4.5126 19 1 10.3296 -5.2972 5.3199 20 1 10.4879 -4.8410 2.9432 21 6 3.1477 1.3837 0.3266 22 6 3.4347 1.7237 1.6353 23 6 3.8943 2.9919 1.9357 24 6 4.0681 3.9228 0.9266 25 17 4.6449 5.5159 1.3053 26 6 3.7814 3.5844 -0.3832 27 6 3.3265 2.3119 -0.6849 28 9 3.0510 1.9784 -1.9649 29 1 -1.0500 0.0004 -0.0004 30 1 3.3360 -0.6392 1.9034 31 1 3.8823 -4.8141 0.4194 32 1 3.7325 -5.2531 2.0165 33 1 5.5871 -2.0533 2.0592 34 1 5.7958 -3.3946 0.9078 35 1 5.5613 -5.0233 2.7627 36 1 5.3526 -3.6819 3.9141 37 1 7.8070 -5.8869 5.5505 38 1 3.2990 0.9980 2.4236 39 1 4.1179 3.2566 2.9586 40 1 3.9166 4.3108 -1.1709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574505401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:13 Heat of formation + Delta-G solvation = -34.173962 kcal Electronic energy + Delta-G solvation = -25755.104454 eV Core-core repulsion = 21703.554451 eV Total energy + Delta-G solvation = -4051.550004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.15719 -41.42260 -40.26584 -37.90762 -37.20355 -36.57574 -34.83170 -33.67203 -32.23952 -31.82972 -31.67530 -28.75455 -27.40171 -25.50797 -24.21550 -23.17183 -22.42279 -21.30664 -19.60074 -19.33390 -18.72257 -18.20374 -17.98824 -17.35935 -16.92684 -16.67106 -16.48358 -16.23110 -16.06814 -15.71775 -15.55042 -15.21187 -14.78913 -14.65360 -14.56716 -14.50483 -14.25719 -13.96156 -13.44720 -13.20928 -12.92336 -12.70844 -12.67516 -12.53664 -12.42206 -12.08921 -11.84172 -11.77473 -11.63849 -11.34457 -11.29692 -10.80523 -10.57235 -10.53086 -10.16887 -9.82553 -9.65608 -8.19583 -6.29532 -0.30444 -0.07919 0.90316 1.35058 1.41713 1.42810 1.50236 1.53088 1.72843 2.22172 2.27559 2.41692 3.01989 3.14378 3.22292 3.48060 3.50582 3.68583 3.74170 3.83623 3.93637 4.12497 4.22815 4.29651 4.33824 4.63711 4.67398 4.77465 4.84541 4.90968 4.94184 4.98180 5.10557 5.22292 5.47991 5.49088 5.68075 5.82915 6.04399 6.23303 6.35940 6.47437 6.54289 6.85989 7.08428 7.39568 8.90896 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.009490 B = 0.002990 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.732481 B = 9361.787537 C =11582.965081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.243 4.243 3 C 0.306 3.694 4 H 0.098 0.902 5 N -0.711 5.711 6 C 0.533 3.467 7 O -0.563 6.563 8 C 0.084 3.916 9 H 0.115 0.885 10 N -0.831 5.831 11 C -0.122 4.122 12 C 0.031 3.969 13 C -0.545 4.545 14 H 0.055 0.945 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.956 3.044 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.127 4.127 22 C -0.067 4.067 23 C -0.105 4.105 24 C -0.009 4.009 25 Cl -0.047 7.047 26 C -0.141 4.141 27 C 0.113 3.887 28 F -0.137 7.137 29 H 0.254 0.746 30 H 0.417 0.583 31 H 0.344 0.656 32 H 0.355 0.645 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.002 0.998 36 H 0.005 0.995 37 H 0.264 0.736 38 H 0.163 0.837 39 H 0.170 0.830 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.011 21.294 -5.891 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.245 4.245 3 C 0.201 3.799 4 H 0.116 0.884 5 N -0.366 5.366 6 C 0.320 3.680 7 O -0.440 6.440 8 C -0.031 4.031 9 H 0.133 0.867 10 N -0.363 5.363 11 C -0.162 4.162 12 C -0.006 4.006 13 C -0.583 4.583 14 H 0.073 0.927 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.781 3.219 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.128 4.128 22 C -0.085 4.085 23 C -0.124 4.124 24 C -0.036 4.036 25 Cl -0.018 7.018 26 C -0.161 4.161 27 C 0.093 3.907 28 F -0.115 7.115 29 H 0.271 0.729 30 H 0.257 0.743 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.020 0.980 36 H 0.024 0.976 37 H 0.072 0.928 38 H 0.180 0.820 39 H 0.187 0.813 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.858 21.267 -6.556 25.217 hybrid contribution 1.931 -0.294 0.233 1.968 sum -9.927 20.973 -6.323 24.050 Atomic orbital electron populations 1.25819 0.96663 0.97183 0.97236 1.23262 0.94663 1.03170 1.03377 1.15978 0.84203 0.85758 0.93961 0.88407 1.45957 1.67589 1.07439 1.15602 1.20893 0.75444 0.82827 0.88862 1.90646 1.51398 1.78398 1.23546 1.21408 0.95096 0.89558 0.97062 0.86735 1.58750 1.66878 1.02020 1.08620 1.22157 0.92954 1.01601 0.99454 1.18960 0.94675 0.94114 0.92891 1.21598 0.94215 1.25751 1.16710 0.92671 1.25827 1.03027 0.94879 0.95428 1.70045 1.37568 1.28462 1.20536 0.85639 0.80090 0.78458 0.77712 1.19116 1.20939 1.19807 1.19786 1.03993 0.94322 0.94715 1.21002 0.95957 0.96904 0.94632 1.21405 0.98665 0.91612 1.00715 1.20775 1.00634 0.88380 0.93781 1.98409 1.86826 1.22208 1.94385 1.21086 1.02090 0.95472 0.97405 1.17324 1.01169 0.93781 0.78403 1.91526 1.91355 1.92784 1.35880 0.72947 0.74343 0.84292 0.83010 0.91091 0.93713 0.98012 0.97633 0.92761 0.81983 0.81274 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 19.25 74.32 1.43 -1.64 16 2 C -0.24 -6.02 12.85 31.13 0.40 -5.62 16 3 C 0.31 7.54 2.45 42.44 0.10 7.64 16 4 H 0.10 2.88 7.08 -2.39 -0.02 2.86 16 5 N -0.71 -17.35 4.94 -454.84 -2.25 -19.60 16 6 C 0.53 16.90 7.05 87.66 0.62 17.52 16 7 O -0.56 -21.84 15.88 -3.03 -0.05 -21.89 16 8 C 0.08 2.68 3.21 44.17 0.14 2.83 16 9 H 0.11 3.29 8.14 -2.38 -0.02 3.27 16 10 N -0.83 -27.88 8.94 -171.79 -1.54 -29.42 16 11 C -0.12 -4.51 4.78 30.60 0.15 -4.36 16 12 C 0.03 1.45 4.74 29.85 0.14 1.59 16 13 C -0.54 -29.10 9.11 25.60 0.23 -28.86 16 14 H 0.06 2.87 7.74 -2.91 -0.02 2.85 16 15 C 0.01 0.38 5.46 84.65 0.46 0.84 16 16 N -0.93 -53.29 13.29 21.45 0.28 -53.00 16 17 Si 0.96 42.53 29.54 68.60 2.03 44.56 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 C -0.13 -2.51 5.01 -19.82 -0.10 -2.61 16 22 C -0.07 -0.99 9.22 22.26 0.21 -0.79 16 23 C -0.11 -1.37 9.83 22.29 0.22 -1.15 16 24 C -0.01 -0.13 6.32 22.32 0.14 0.01 16 25 Cl -0.05 -0.64 28.96 -2.72 -0.08 -0.72 16 26 C -0.14 -2.26 9.81 22.34 0.22 -2.04 16 27 C 0.11 2.27 7.24 22.37 0.16 2.43 16 28 F -0.14 -3.17 16.52 44.97 0.74 -2.43 16 29 H 0.25 2.87 7.80 -4.42 -0.03 2.84 16 30 H 0.42 7.68 6.30 -92.71 -0.58 7.10 16 31 H 0.34 11.87 8.58 -89.69 -0.77 11.10 16 32 H 0.35 11.98 7.55 -89.69 -0.68 11.30 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.00 0.08 6.87 -2.38 -0.02 0.06 16 36 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 38 H 0.16 1.75 6.16 -2.91 -0.02 1.73 16 39 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -68.48 370.79 2.76 -65.73 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: -0.91 Total: 31.00 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 4.52 Total: -14.22 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -3.50 Total: -102.03 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.74 Total: -2.43 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -68.48 2.76 -65.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574505401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.552 kcal (2) G-P(sol) polarization free energy of solvation -68.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds