Wall clock time and date at job start Tue Mar 31 2020 21:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47291 * 36.55559 * 3 2 1 5 5 N 1.46499 * 109.46607 * 156.55583 * 3 2 1 6 6 C 1.34772 * 119.99919 * 274.99184 * 5 3 2 7 7 O 1.21279 * 120.00159 * 0.02562 * 6 5 3 8 8 C 1.50707 * 119.99926 * 180.02562 * 6 5 3 9 9 H 1.08990 * 109.46905 * 40.00676 * 8 6 5 10 10 N 1.46898 * 109.47045 * 160.00562 * 8 6 5 11 11 C 1.52996 * 109.47058 * 280.00535 * 8 6 5 12 12 C 1.52998 * 109.46929 * 175.00132 * 11 8 6 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 11 16 16 N 1.31514 * 120.00481 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99745 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47209 * 90.00365 * 17 15 13 19 19 H 1.48506 * 109.47294 * 210.00213 * 17 15 13 20 20 H 1.48501 * 109.47275 * 330.00116 * 17 15 13 21 21 C 1.50699 * 109.46866 * 276.55338 * 3 2 1 22 22 C 1.38227 * 119.99809 * 264.72708 * 21 3 2 23 23 C 1.38207 * 120.03329 * 179.73026 * 22 21 3 24 24 C 1.38387 * 120.04185 * 0.54349 * 23 22 21 25 25 Cl 1.73601 * 120.00263 * 179.74833 * 24 23 22 26 26 C 1.38295 * 119.99623 * 359.73177 * 24 23 22 27 27 C 1.38445 * 119.99831 * 85.00683 * 21 3 2 28 28 F 1.35100 * 120.02177 * 359.96914 * 27 21 3 29 29 H 4.18744 * 15.03901 * 0.02562 * 4 2 1 30 30 H 0.96998 * 119.99878 * 95.00572 * 5 3 2 31 31 H 1.00903 * 111.00091 * 296.04909 * 10 8 6 32 32 H 1.00906 * 111.00186 * 59.99876 * 10 8 6 33 33 H 1.09000 * 109.47441 * 55.00222 * 11 8 6 34 34 H 1.09002 * 109.47087 * 294.99668 * 11 8 6 35 35 H 1.09001 * 109.47671 * 60.00109 * 12 11 8 36 36 H 1.08998 * 109.47454 * 300.00107 * 12 11 8 37 37 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 38 38 H 1.07999 * 119.98426 * 0.02562 * 22 21 3 39 39 H 1.08002 * 119.97744 * 180.27755 * 23 22 21 40 40 H 1.07994 * 120.02067 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.8246 -0.6120 5 7 3.1337 1.2681 -0.5495 6 6 3.2624 1.4195 -1.8825 7 8 2.9741 0.5066 -2.6272 8 6 3.7646 2.7231 -2.4478 9 1 4.5707 3.1043 -1.8211 10 7 4.2657 2.5049 -3.8113 11 6 2.6208 3.7388 -2.4813 12 6 3.1580 5.0968 -2.9373 13 6 2.0313 6.0972 -2.9710 14 1 1.0320 5.7943 -2.6950 15 6 2.2772 7.4001 -3.3490 16 7 1.2941 8.2732 -3.3778 17 14 4.0071 7.9256 -3.8188 18 1 4.2059 7.7270 -5.2770 19 1 4.1968 9.3600 -3.4842 20 1 4.9938 7.1077 -3.0687 21 6 3.1484 -0.1613 1.4115 22 6 3.4819 0.9529 2.1585 23 6 3.9374 0.8056 3.4550 24 6 4.0707 -0.4581 4.0031 25 17 4.6492 -0.6423 5.6295 26 6 3.7429 -1.5742 3.2551 27 6 3.2812 -1.4263 1.9581 28 9 2.9601 -2.5158 1.2267 29 1 -1.0500 -0.0004 -0.0009 30 1 3.3641 1.9982 0.0460 31 1 5.0635 1.8871 -3.8088 32 1 3.5365 2.1512 -4.4124 33 1 2.1905 3.8344 -1.4844 34 1 1.8537 3.3992 -3.1772 35 1 3.5883 5.0013 -3.9343 36 1 3.9252 5.4364 -2.2416 37 1 1.4672 9.1898 -3.6434 38 1 3.3820 1.9394 1.7304 39 1 4.1935 1.6770 4.0393 40 1 3.8464 -2.5605 3.6826 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574505403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:21 Heat of formation + Delta-G solvation = -9.625970 kcal Electronic energy + Delta-G solvation = -25727.117572 eV Core-core repulsion = 21676.632049 eV Total energy + Delta-G solvation = -4050.485523 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.44845 -40.53677 -39.50050 -37.25195 -36.07631 -35.28305 -32.84779 -32.69515 -31.54335 -31.21600 -30.53105 -27.66960 -26.24941 -23.99660 -23.21423 -22.42612 -20.67865 -20.03415 -18.76262 -18.48729 -17.51972 -17.30448 -16.66891 -16.53643 -16.21048 -15.89095 -15.54802 -15.22467 -15.06014 -14.61040 -14.15541 -14.10454 -13.96326 -13.81864 -13.58989 -13.49761 -12.63804 -12.58790 -12.39940 -12.09664 -11.84125 -11.74806 -11.55627 -11.08161 -10.93168 -10.82321 -10.49106 -10.40232 -10.05012 -9.74953 -9.64261 -9.59718 -9.57159 -9.20956 -9.14255 -8.56272 -8.45116 -6.01447 -3.99358 0.30523 0.49021 1.45646 2.29597 2.56480 2.59113 2.84370 3.24820 3.35807 3.42503 3.47113 3.64139 4.00866 4.04200 4.27534 4.37239 4.49162 4.54642 4.64286 4.82101 4.93383 5.10900 5.24837 5.30426 5.33549 5.35022 5.51081 5.56679 5.60413 5.72841 6.06215 6.12398 6.24504 6.42813 6.82783 7.12651 7.32189 7.36042 7.42571 7.53306 7.60594 7.83702 8.07325 8.55673 9.03143 9.61356 11.12034 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.002569 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.755760 B =10896.904024 C =11889.036877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.207 4.207 3 C 0.303 3.697 4 H 0.120 0.880 5 N -0.724 5.724 6 C 0.488 3.512 7 O -0.541 6.541 8 C 0.077 3.923 9 H 0.101 0.899 10 N -0.810 5.810 11 C -0.088 4.088 12 C -0.004 4.004 13 C -0.522 4.522 14 H 0.069 0.931 15 C 0.066 3.934 16 N -0.906 5.906 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.264 1.264 21 C -0.118 4.118 22 C -0.068 4.068 23 C -0.112 4.112 24 C -0.006 4.006 25 Cl -0.053 7.053 26 C -0.144 4.144 27 C 0.130 3.870 28 F -0.124 7.124 29 H 0.222 0.778 30 H 0.405 0.595 31 H 0.336 0.664 32 H 0.351 0.649 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.030 0.970 36 H 0.013 0.987 37 H 0.262 0.738 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.836 -20.598 16.922 27.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.209 4.209 3 C 0.198 3.802 4 H 0.138 0.862 5 N -0.379 5.379 6 C 0.274 3.726 7 O -0.417 6.417 8 C -0.039 4.039 9 H 0.118 0.882 10 N -0.338 5.338 11 C -0.126 4.126 12 C -0.041 4.041 13 C -0.560 4.560 14 H 0.087 0.913 15 C -0.135 4.135 16 N -0.545 5.545 17 Si 0.710 3.290 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.189 1.189 21 C -0.120 4.120 22 C -0.086 4.086 23 C -0.131 4.131 24 C -0.033 4.033 25 Cl -0.024 7.024 26 C -0.163 4.163 27 C 0.110 3.890 28 F -0.103 7.103 29 H 0.238 0.762 30 H 0.242 0.758 31 H 0.148 0.852 32 H 0.165 0.835 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.808 -20.318 16.403 26.985 hybrid contribution 0.343 -0.556 0.305 0.722 sum 7.151 -20.874 16.708 27.677 Atomic orbital electron populations 1.24992 0.95850 0.98011 0.99019 1.22874 0.93977 1.02353 1.01646 1.16126 0.84054 0.89796 0.90243 0.86248 1.46341 1.67963 1.15401 1.08179 1.22824 0.76446 0.91775 0.81511 1.90679 1.49764 1.42917 1.58345 1.21895 1.00095 0.90713 0.91186 0.88161 1.59035 1.12006 1.55217 1.07512 1.21482 0.94440 0.95248 1.01416 1.19485 0.96651 0.90928 0.97069 1.21169 0.95692 0.93649 1.45466 0.91320 1.25017 0.96924 0.96602 0.94974 1.69922 1.31717 1.04016 1.48884 0.86732 0.85524 0.77328 0.79381 1.20281 1.21719 1.18879 1.19867 1.02893 0.92594 0.96629 1.20822 0.96343 0.98451 0.92992 1.21148 1.00101 0.96356 0.95452 1.20664 1.00852 0.94243 0.87519 1.98406 1.86854 1.97927 1.19215 1.20960 1.02586 1.00026 0.92739 1.17134 0.99701 0.82462 0.89672 1.91562 1.90058 1.52204 1.76448 0.76163 0.75760 0.85190 0.83481 0.92178 0.92140 0.95192 0.96859 0.92815 0.83613 0.83471 0.83192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 19.25 29.55 0.57 -1.33 16 2 C -0.21 -2.69 12.82 -37.12 -0.48 -3.17 16 3 C 0.30 3.53 2.40 -71.87 -0.17 3.35 16 4 H 0.12 1.54 7.23 -51.93 -0.38 1.16 16 5 N -0.72 -8.37 4.96 -57.70 -0.29 -8.66 16 6 C 0.49 7.06 7.01 -10.98 -0.08 6.98 16 7 O -0.54 -9.40 15.91 5.56 0.09 -9.31 16 8 C 0.08 1.15 3.15 -68.86 -0.22 0.93 16 9 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 10 N -0.81 -12.10 8.44 -5.66 -0.05 -12.15 16 11 C -0.09 -1.63 4.78 -26.73 -0.13 -1.76 16 12 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16 13 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 14 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 15 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.91 -27.89 13.96 55.43 0.77 -27.11 16 17 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 21 C -0.12 -1.11 5.02 -104.55 -0.52 -1.63 16 22 C -0.07 -0.51 9.24 -39.60 -0.37 -0.87 16 23 C -0.11 -0.75 9.83 -39.54 -0.39 -1.14 16 24 C -0.01 -0.04 6.32 -39.51 -0.25 -0.29 16 25 Cl -0.05 -0.36 28.96 -51.86 -1.50 -1.86 16 26 C -0.14 -1.10 9.81 -39.48 -0.39 -1.48 16 27 C 0.13 1.21 7.24 -39.42 -0.29 0.92 16 28 F -0.12 -1.30 16.57 2.25 0.04 -1.26 16 29 H 0.22 1.83 7.80 -54.09 -0.42 1.41 16 30 H 0.40 3.69 6.20 -40.82 -0.25 3.43 16 31 H 0.34 4.26 9.06 -39.29 -0.36 3.91 16 32 H 0.35 5.43 8.58 -39.29 -0.34 5.09 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 36 H 0.01 0.30 7.18 -51.93 -0.37 -0.08 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.15 0.87 6.06 -52.49 -0.32 0.55 16 39 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -33.92 369.09 -7.79 -41.72 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.51 Total: 8.92 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -3.24 Total: -12.86 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.44 Total: -47.92 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.92 -7.79 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574505403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.090 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds