Wall clock time and date at job start Tue Mar 31 2020 21:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47291 * 36.55559 * 3 2 1 5 5 N 1.46499 * 109.46607 * 156.55583 * 3 2 1 6 6 C 1.34772 * 119.99919 * 274.99184 * 5 3 2 7 7 O 1.21279 * 120.00159 * 0.02562 * 6 5 3 8 8 C 1.50707 * 119.99926 * 180.02562 * 6 5 3 9 9 H 1.08990 * 109.46905 * 40.00676 * 8 6 5 10 10 N 1.46898 * 109.47045 * 160.00562 * 8 6 5 11 11 C 1.52996 * 109.47058 * 280.00535 * 8 6 5 12 12 C 1.52998 * 109.46929 * 175.00132 * 11 8 6 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 11 16 16 N 1.31514 * 120.00481 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99745 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47209 * 90.00365 * 17 15 13 19 19 H 1.48506 * 109.47294 * 210.00213 * 17 15 13 20 20 H 1.48501 * 109.47275 * 330.00116 * 17 15 13 21 21 C 1.50699 * 109.46866 * 276.55338 * 3 2 1 22 22 C 1.38227 * 119.99809 * 264.72708 * 21 3 2 23 23 C 1.38207 * 120.03329 * 179.73026 * 22 21 3 24 24 C 1.38387 * 120.04185 * 0.54349 * 23 22 21 25 25 Cl 1.73601 * 120.00263 * 179.74833 * 24 23 22 26 26 C 1.38295 * 119.99623 * 359.73177 * 24 23 22 27 27 C 1.38445 * 119.99831 * 85.00683 * 21 3 2 28 28 F 1.35100 * 120.02177 * 359.96914 * 27 21 3 29 29 H 4.18744 * 15.03901 * 0.02562 * 4 2 1 30 30 H 0.96998 * 119.99878 * 95.00572 * 5 3 2 31 31 H 1.00903 * 111.00091 * 296.04909 * 10 8 6 32 32 H 1.00906 * 111.00186 * 59.99876 * 10 8 6 33 33 H 1.09000 * 109.47441 * 55.00222 * 11 8 6 34 34 H 1.09002 * 109.47087 * 294.99668 * 11 8 6 35 35 H 1.09001 * 109.47671 * 60.00109 * 12 11 8 36 36 H 1.08998 * 109.47454 * 300.00107 * 12 11 8 37 37 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 38 38 H 1.07999 * 119.98426 * 0.02562 * 22 21 3 39 39 H 1.08002 * 119.97744 * 180.27755 * 23 22 21 40 40 H 1.07994 * 120.02067 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.8246 -0.6120 5 7 3.1337 1.2681 -0.5495 6 6 3.2624 1.4195 -1.8825 7 8 2.9741 0.5066 -2.6272 8 6 3.7646 2.7231 -2.4478 9 1 4.5707 3.1043 -1.8211 10 7 4.2657 2.5049 -3.8113 11 6 2.6208 3.7388 -2.4813 12 6 3.1580 5.0968 -2.9373 13 6 2.0313 6.0972 -2.9710 14 1 1.0320 5.7943 -2.6950 15 6 2.2772 7.4001 -3.3490 16 7 1.2941 8.2732 -3.3778 17 14 4.0071 7.9256 -3.8188 18 1 4.2059 7.7270 -5.2770 19 1 4.1968 9.3600 -3.4842 20 1 4.9938 7.1077 -3.0687 21 6 3.1484 -0.1613 1.4115 22 6 3.4819 0.9529 2.1585 23 6 3.9374 0.8056 3.4550 24 6 4.0707 -0.4581 4.0031 25 17 4.6492 -0.6423 5.6295 26 6 3.7429 -1.5742 3.2551 27 6 3.2812 -1.4263 1.9581 28 9 2.9601 -2.5158 1.2267 29 1 -1.0500 -0.0004 -0.0009 30 1 3.3641 1.9982 0.0460 31 1 5.0635 1.8871 -3.8088 32 1 3.5365 2.1512 -4.4124 33 1 2.1905 3.8344 -1.4844 34 1 1.8537 3.3992 -3.1772 35 1 3.5883 5.0013 -3.9343 36 1 3.9252 5.4364 -2.2416 37 1 1.4672 9.1898 -3.6434 38 1 3.3820 1.9394 1.7304 39 1 4.1935 1.6770 4.0393 40 1 3.8464 -2.5605 3.6826 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574505403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:21 Heat of formation + Delta-G solvation = -32.481814 kcal Electronic energy + Delta-G solvation = -25728.108676 eV Core-core repulsion = 21676.632049 eV Total energy + Delta-G solvation = -4051.476627 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.17460 -41.50197 -40.31755 -37.91767 -37.06391 -36.57311 -34.78149 -33.71492 -32.30113 -32.23775 -31.84520 -28.84141 -27.56976 -25.20219 -24.14272 -23.17451 -22.18187 -21.34585 -19.68122 -19.33756 -18.83048 -18.35744 -18.01925 -17.43524 -16.96181 -16.82752 -16.63284 -16.21555 -16.13572 -15.79376 -15.59158 -15.17726 -14.87462 -14.67887 -14.64593 -14.53553 -14.27755 -13.95135 -13.52269 -13.23463 -12.81421 -12.72261 -12.54998 -12.42580 -12.09879 -11.99204 -11.79776 -11.74407 -11.59475 -11.39614 -11.27468 -11.14355 -10.69519 -10.60969 -10.18821 -9.84941 -9.69668 -8.22945 -6.26292 -0.32267 -0.09647 0.89494 1.27681 1.43995 1.45183 1.48756 1.57631 1.67473 2.19951 2.27359 2.43402 3.00400 3.14015 3.19613 3.44191 3.47591 3.52963 3.75959 3.81469 3.91466 4.06709 4.25343 4.26779 4.32372 4.61340 4.71192 4.76003 4.84172 4.87695 4.90870 4.96919 5.15126 5.19155 5.46340 5.52481 5.67397 5.75036 6.03385 6.29808 6.34450 6.49388 6.51080 6.82684 6.99817 7.38351 8.93999 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.002569 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.755760 B =10896.904024 C =11889.036877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.243 4.243 3 C 0.305 3.695 4 H 0.102 0.898 5 N -0.709 5.709 6 C 0.492 3.508 7 O -0.573 6.573 8 C 0.087 3.913 9 H 0.129 0.871 10 N -0.817 5.817 11 C -0.079 4.079 12 C 0.003 3.997 13 C -0.530 4.530 14 H 0.027 0.973 15 C 0.002 3.998 16 N -0.956 5.956 17 Si 0.954 3.046 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.237 1.237 21 C -0.126 4.126 22 C -0.067 4.067 23 C -0.104 4.104 24 C -0.008 4.008 25 Cl -0.047 7.047 26 C -0.141 4.141 27 C 0.114 3.886 28 F -0.137 7.137 29 H 0.249 0.751 30 H 0.418 0.582 31 H 0.350 0.650 32 H 0.346 0.654 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.264 0.736 38 H 0.162 0.838 39 H 0.170 0.830 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.073 -20.705 18.382 29.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.244 4.244 3 C 0.200 3.800 4 H 0.119 0.881 5 N -0.363 5.363 6 C 0.278 3.722 7 O -0.452 6.452 8 C -0.029 4.029 9 H 0.147 0.853 10 N -0.346 5.346 11 C -0.118 4.118 12 C -0.035 4.035 13 C -0.568 4.568 14 H 0.045 0.955 15 C -0.194 4.194 16 N -0.598 5.598 17 Si 0.777 3.223 18 H -0.200 1.200 19 H -0.215 1.215 20 H -0.160 1.160 21 C -0.128 4.128 22 C -0.086 4.086 23 C -0.123 4.123 24 C -0.035 4.035 25 Cl -0.018 7.018 26 C -0.160 4.160 27 C 0.094 3.906 28 F -0.116 7.116 29 H 0.265 0.735 30 H 0.258 0.742 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.180 0.820 39 H 0.188 0.812 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.064 -20.443 17.910 28.650 hybrid contribution -0.476 -0.555 -0.075 0.735 sum 8.588 -20.998 17.835 28.858 Atomic orbital electron populations 1.25824 0.96851 0.96876 0.98153 1.23411 0.94957 1.03442 1.02575 1.16044 0.83664 0.88876 0.91398 0.88066 1.46176 1.66727 1.15956 1.07487 1.22662 0.76130 0.91227 0.82173 1.90672 1.51225 1.43934 1.59356 1.21725 0.99326 0.89893 0.91920 0.85332 1.59034 1.12419 1.55770 1.07368 1.21267 0.95232 0.94265 1.01015 1.19374 0.95052 0.91645 0.97397 1.21566 0.95641 0.95049 1.44580 0.95461 1.26020 1.01699 0.96687 0.95037 1.70084 1.34485 1.04591 1.50608 0.85605 0.80173 0.77200 0.79272 1.19971 1.21466 1.16011 1.19757 1.03973 0.93379 0.95658 1.21001 0.95901 0.98465 0.93204 1.21409 0.98797 0.96926 0.95123 1.20779 1.00586 0.94409 0.87756 1.98413 1.86727 1.97933 1.18707 1.21090 1.01873 1.00988 0.92056 1.17314 1.00831 0.82150 0.90326 1.91526 1.90367 1.52804 1.76879 0.73483 0.74185 0.83600 0.84059 0.91462 0.94387 0.95445 0.95338 0.92699 0.82036 0.81205 0.81891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 19.25 74.32 1.43 -2.25 16 2 C -0.24 -6.26 12.82 31.13 0.40 -5.86 16 3 C 0.31 7.00 2.40 42.44 0.10 7.10 16 4 H 0.10 2.69 7.23 -2.39 -0.02 2.67 16 5 N -0.71 -15.43 4.96 -454.84 -2.26 -17.69 16 6 C 0.49 13.66 7.01 87.66 0.61 14.27 16 7 O -0.57 -19.80 15.91 -3.03 -0.05 -19.85 16 8 C 0.09 2.41 3.15 44.17 0.14 2.55 16 9 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 10 N -0.82 -22.97 8.44 -171.81 -1.45 -24.42 16 11 C -0.08 -2.88 4.78 30.59 0.15 -2.73 16 12 C 0.00 0.12 3.93 29.85 0.12 0.24 16 13 C -0.53 -30.03 9.66 25.60 0.25 -29.78 16 14 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 15 C 0.00 0.09 5.47 84.65 0.46 0.56 16 16 N -0.96 -60.03 13.96 21.45 0.30 -59.73 16 17 Si 0.95 43.85 27.47 68.60 1.88 45.74 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.24 -9.79 6.53 99.48 0.65 -9.14 16 21 C -0.13 -2.24 5.02 -19.82 -0.10 -2.34 16 22 C -0.07 -0.86 9.24 22.26 0.21 -0.66 16 23 C -0.10 -1.12 9.83 22.30 0.22 -0.90 16 24 C -0.01 -0.10 6.32 22.32 0.14 0.04 16 25 Cl -0.05 -0.54 28.96 -2.72 -0.08 -0.62 16 26 C -0.14 -1.96 9.81 22.34 0.22 -1.74 16 27 C 0.11 2.04 7.24 22.37 0.16 2.20 16 28 F -0.14 -2.91 16.57 44.97 0.75 -2.16 16 29 H 0.25 3.78 7.80 -4.42 -0.03 3.74 16 30 H 0.42 6.64 6.20 -92.71 -0.57 6.06 16 31 H 0.35 8.15 9.06 -89.69 -0.81 7.34 16 32 H 0.35 10.45 8.58 -89.69 -0.77 9.68 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.03 1.23 7.20 -2.39 -0.02 1.22 16 36 H 0.03 1.18 7.18 -2.39 -0.02 1.17 16 37 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.16 1.47 6.06 -2.91 -0.02 1.45 16 39 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 40 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -74.65 369.09 2.51 -72.14 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: -1.10 Total: 25.89 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 4.51 Total: -19.29 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -3.41 Total: -101.84 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.05 Total: -19.85 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.75 Total: -2.16 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.74 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -74.65 2.51 -72.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574505403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.660 kcal (2) G-P(sol) polarization free energy of solvation -74.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds