Wall clock time and date at job start Tue Mar 31 2020 21:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47132 * 82.87190 * 3 2 1 5 5 N 1.46500 * 109.47043 * 202.87111 * 3 2 1 6 6 C 1.34779 * 119.99793 * 274.99879 * 5 3 2 7 7 O 1.21279 * 120.00185 * 0.02562 * 6 5 3 8 8 C 1.50702 * 119.99614 * 179.97438 * 6 5 3 9 9 H 1.09000 * 109.47325 * 320.00220 * 8 6 5 10 10 N 1.46898 * 109.47099 * 199.99977 * 8 6 5 11 11 C 1.53004 * 109.46764 * 80.00476 * 8 6 5 12 12 C 1.53002 * 109.46817 * 184.99785 * 11 8 6 13 13 C 1.50699 * 109.47155 * 180.02562 * 12 11 8 14 14 H 1.08001 * 119.99832 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00071 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00193 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00037 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47108 * 90.00354 * 17 15 13 19 19 H 1.48503 * 109.47196 * 210.00273 * 17 15 13 20 20 H 1.48503 * 109.47267 * 330.00614 * 17 15 13 21 21 C 1.50703 * 109.47158 * 322.87125 * 3 2 1 22 22 C 1.38226 * 119.99858 * 264.72482 * 21 3 2 23 23 C 1.38200 * 120.03617 * 179.72344 * 22 21 3 24 24 C 1.38389 * 120.03960 * 0.55337 * 23 22 21 25 25 Cl 1.73600 * 119.99942 * 179.74363 * 24 23 22 26 26 C 1.38288 * 119.99707 * 359.72126 * 24 23 22 27 27 C 1.38445 * 120.00190 * 84.99833 * 21 3 2 28 28 F 1.35104 * 120.01771 * 359.97438 * 27 21 3 29 29 H 4.18743 * 15.03955 * 0.02562 * 4 2 1 30 30 H 0.97004 * 120.00223 * 94.99969 * 5 3 2 31 31 H 1.00900 * 111.00504 * 176.04890 * 10 8 6 32 32 H 1.00903 * 110.99831 * 300.00626 * 10 8 6 33 33 H 1.09002 * 109.47017 * 304.99527 * 11 8 6 34 34 H 1.09000 * 109.47376 * 65.00142 * 11 8 6 35 35 H 1.09002 * 109.47116 * 299.99681 * 12 11 8 36 36 H 1.08999 * 109.47379 * 60.00012 * 12 11 8 37 37 H 0.96996 * 120.00361 * 179.97438 * 16 15 13 38 38 H 1.07997 * 119.98229 * 0.02562 * 22 21 3 39 39 H 1.08007 * 119.98115 * 180.27537 * 23 22 21 40 40 H 1.07994 * 120.01996 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1267 -1.0197 5 7 3.1337 1.2735 0.5368 6 6 3.2620 2.3421 -0.2745 7 8 2.9731 2.2501 -1.4488 8 6 3.7631 3.6516 0.2779 9 1 3.3281 3.8208 1.2629 10 7 3.3741 4.7443 -0.6235 11 6 5.2880 3.6055 0.3949 12 6 5.7865 4.8845 1.0705 13 6 7.2885 4.8395 1.1852 14 1 7.8329 3.9839 0.8138 15 6 7.9674 5.8900 1.7653 16 7 9.2781 5.8504 1.8658 17 14 7.0256 7.3694 2.4083 18 1 6.6615 7.1446 3.8303 19 1 7.8757 8.5823 2.3009 20 1 5.7909 7.5576 1.6050 21 6 3.1488 -1.1319 0.8576 22 6 3.4829 -0.9025 2.1792 23 6 3.9387 -1.9417 2.9679 24 6 4.0720 -3.2109 2.4325 25 17 4.6510 -4.5141 3.4224 26 6 3.7437 -3.4409 1.1090 27 6 3.2816 -2.4009 0.3204 28 9 2.9600 -2.6245 -0.9726 29 1 -1.0500 0.0005 -0.0001 30 1 3.3644 1.3472 1.4762 31 1 3.6423 5.6396 -0.2434 32 1 3.7653 4.6103 -1.5439 33 1 5.5806 2.7416 0.9917 34 1 5.7265 3.5254 -0.5998 35 1 5.4939 5.7485 0.4737 36 1 5.3481 4.9647 2.0652 37 1 9.7558 6.5896 2.2736 38 1 3.3830 0.0884 2.5969 39 1 4.1952 -1.7624 4.0016 40 1 3.8473 -4.4312 0.6909 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574505404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:25 Heat of formation + Delta-G solvation = -9.433079 kcal Electronic energy + Delta-G solvation = -25795.226829 eV Core-core repulsion = 21744.749671 eV Total energy + Delta-G solvation = -4050.477159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.36690 -40.43514 -39.37678 -37.17281 -36.11502 -35.41183 -32.88576 -32.69831 -31.47465 -31.14849 -30.36729 -27.72568 -26.24316 -24.02257 -23.27864 -22.39540 -20.72438 -20.07899 -18.73081 -18.42252 -17.58989 -17.22751 -16.76648 -16.48037 -16.14220 -15.74583 -15.26425 -15.15262 -14.87995 -14.32936 -14.25162 -14.06628 -13.95697 -13.82748 -13.61815 -13.34349 -12.88887 -12.72125 -12.52288 -12.02100 -11.89483 -11.74519 -11.48421 -11.45718 -11.02491 -10.87379 -10.47981 -10.41155 -10.13544 -9.92648 -9.54710 -9.50781 -9.47451 -9.35035 -9.12568 -8.65302 -8.38771 -6.14610 -4.14532 0.38620 0.57454 1.53924 2.30066 2.57035 2.71014 2.91707 3.22136 3.24230 3.31154 3.31863 3.71827 4.03239 4.11509 4.29751 4.34648 4.45170 4.62321 4.74421 4.96846 4.99901 5.17167 5.18205 5.33161 5.37113 5.40962 5.51659 5.58914 5.63496 5.69763 6.07366 6.14072 6.20149 6.26445 6.59798 7.04367 7.16436 7.20320 7.38853 7.44173 7.62765 7.72655 8.22435 8.41161 8.89281 9.46403 10.98530 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.002921 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.380568 B = 9581.989885 C =11475.292068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.198 4.198 3 C 0.304 3.696 4 H 0.122 0.878 5 N -0.728 5.728 6 C 0.531 3.469 7 O -0.525 6.525 8 C 0.074 3.926 9 H 0.098 0.902 10 N -0.830 5.830 11 C -0.131 4.131 12 C -0.010 4.010 13 C -0.525 4.525 14 H 0.071 0.929 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.119 4.119 22 C -0.066 4.066 23 C -0.112 4.112 24 C -0.005 4.005 25 Cl -0.053 7.053 26 C -0.143 4.143 27 C 0.131 3.869 28 F -0.124 7.124 29 H 0.221 0.779 30 H 0.403 0.597 31 H 0.352 0.648 32 H 0.349 0.651 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.353 -18.596 2.688 24.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.200 4.200 3 C 0.199 3.801 4 H 0.140 0.860 5 N -0.383 5.383 6 C 0.318 3.682 7 O -0.399 6.399 8 C -0.041 4.041 9 H 0.116 0.884 10 N -0.363 5.363 11 C -0.170 4.170 12 C -0.048 4.048 13 C -0.563 4.563 14 H 0.090 0.910 15 C -0.134 4.134 16 N -0.538 5.538 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.120 4.120 22 C -0.085 4.085 23 C -0.130 4.130 24 C -0.032 4.032 25 Cl -0.024 7.024 26 C -0.163 4.163 27 C 0.111 3.889 28 F -0.103 7.103 29 H 0.237 0.763 30 H 0.241 0.759 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.081 -18.891 2.037 24.892 hybrid contribution 0.666 0.814 0.696 1.261 sum -15.416 -18.076 2.733 23.914 Atomic orbital electron populations 1.24925 0.95771 0.98220 0.99893 1.22953 0.93998 1.01883 1.01134 1.16097 0.83832 0.81697 0.98445 0.86011 1.46142 1.68650 1.09882 1.13639 1.20924 0.75877 0.85156 0.86287 1.90668 1.48575 1.84020 1.16640 1.21506 0.96452 0.88834 0.97342 0.88374 1.58721 1.67204 1.04212 1.06136 1.22228 0.91096 1.01593 1.02106 1.19574 0.97622 0.92468 0.95107 1.21054 0.89635 1.05724 1.39848 0.91038 1.25043 0.94762 0.98280 0.95339 1.69907 1.06863 1.32464 1.44594 0.86766 0.80258 0.82519 0.79625 1.20260 1.21333 1.18974 1.19838 1.03077 0.93325 0.95778 1.20782 0.96398 0.99718 0.91596 1.21139 1.00024 0.90414 1.01461 1.20657 1.00733 0.90173 0.91639 1.98405 1.86863 1.48037 1.69115 1.20954 1.02548 1.00042 0.92745 1.17123 0.99670 0.92804 0.79298 1.91563 1.90033 1.95130 1.33530 0.76270 0.75900 0.83280 0.83743 0.91809 0.91867 0.96558 0.96762 0.92599 0.83740 0.83496 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 19.25 29.55 0.57 -1.26 16 2 C -0.20 -2.46 12.82 -37.13 -0.48 -2.94 16 3 C 0.30 3.66 2.40 -71.87 -0.17 3.49 16 4 H 0.12 1.67 7.23 -51.93 -0.38 1.29 16 5 N -0.73 -8.80 4.96 -57.69 -0.29 -9.08 16 6 C 0.53 8.16 7.02 -10.98 -0.08 8.08 16 7 O -0.53 -9.77 15.91 5.56 0.09 -9.68 16 8 C 0.07 1.12 3.21 -68.86 -0.22 0.90 16 9 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 10 N -0.83 -12.96 8.93 -5.65 -0.05 -13.01 16 11 C -0.13 -2.33 4.78 -26.73 -0.13 -2.45 16 12 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 13 C -0.52 -14.18 9.66 -34.44 -0.33 -14.51 16 14 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 15 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 16 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 17 Si 0.88 20.66 27.47 -169.99 -4.67 15.99 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 21 C -0.12 -1.19 5.02 -104.55 -0.52 -1.72 16 22 C -0.07 -0.54 9.24 -39.60 -0.37 -0.91 16 23 C -0.11 -0.85 9.83 -39.54 -0.39 -1.23 16 24 C -0.01 -0.04 6.32 -39.51 -0.25 -0.29 16 25 Cl -0.05 -0.41 28.96 -51.86 -1.50 -1.91 16 26 C -0.14 -1.22 9.81 -39.48 -0.39 -1.60 16 27 C 0.13 1.31 7.24 -39.42 -0.29 1.03 16 28 F -0.12 -1.38 16.57 2.25 0.04 -1.34 16 29 H 0.22 1.52 7.80 -54.09 -0.42 1.09 16 30 H 0.40 3.82 6.20 -40.82 -0.25 3.56 16 31 H 0.35 5.32 7.55 -39.29 -0.30 5.02 16 32 H 0.35 5.57 8.58 -39.29 -0.34 5.24 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.02 0.35 5.93 -51.93 -0.31 0.04 16 36 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.15 0.91 6.06 -52.49 -0.32 0.59 16 39 H 0.15 0.84 8.06 -52.48 -0.42 0.41 16 40 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 367.15 15.07 5.53 5.53 Total: -1.00 -32.86 367.15 -7.72 -40.58 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -4.40 Total: 11.04 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -3.24 Total: -11.96 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.44 Total: -48.25 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.86 -7.72 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574505404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.150 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds