Wall clock time and date at job start Tue Mar 31 2020 21:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47132 * 82.87190 * 3 2 1 5 5 N 1.46500 * 109.47043 * 202.87111 * 3 2 1 6 6 C 1.34779 * 119.99793 * 274.99879 * 5 3 2 7 7 O 1.21279 * 120.00185 * 0.02562 * 6 5 3 8 8 C 1.50702 * 119.99614 * 179.97438 * 6 5 3 9 9 H 1.09000 * 109.47325 * 320.00220 * 8 6 5 10 10 N 1.46898 * 109.47099 * 199.99977 * 8 6 5 11 11 C 1.53004 * 109.46764 * 80.00476 * 8 6 5 12 12 C 1.53002 * 109.46817 * 184.99785 * 11 8 6 13 13 C 1.50699 * 109.47155 * 180.02562 * 12 11 8 14 14 H 1.08001 * 119.99832 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00071 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00193 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00037 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47108 * 90.00354 * 17 15 13 19 19 H 1.48503 * 109.47196 * 210.00273 * 17 15 13 20 20 H 1.48503 * 109.47267 * 330.00614 * 17 15 13 21 21 C 1.50703 * 109.47158 * 322.87125 * 3 2 1 22 22 C 1.38226 * 119.99858 * 264.72482 * 21 3 2 23 23 C 1.38200 * 120.03617 * 179.72344 * 22 21 3 24 24 C 1.38389 * 120.03960 * 0.55337 * 23 22 21 25 25 Cl 1.73600 * 119.99942 * 179.74363 * 24 23 22 26 26 C 1.38288 * 119.99707 * 359.72126 * 24 23 22 27 27 C 1.38445 * 120.00190 * 84.99833 * 21 3 2 28 28 F 1.35104 * 120.01771 * 359.97438 * 27 21 3 29 29 H 4.18743 * 15.03955 * 0.02562 * 4 2 1 30 30 H 0.97004 * 120.00223 * 94.99969 * 5 3 2 31 31 H 1.00900 * 111.00504 * 176.04890 * 10 8 6 32 32 H 1.00903 * 110.99831 * 300.00626 * 10 8 6 33 33 H 1.09002 * 109.47017 * 304.99527 * 11 8 6 34 34 H 1.09000 * 109.47376 * 65.00142 * 11 8 6 35 35 H 1.09002 * 109.47116 * 299.99681 * 12 11 8 36 36 H 1.08999 * 109.47379 * 60.00012 * 12 11 8 37 37 H 0.96996 * 120.00361 * 179.97438 * 16 15 13 38 38 H 1.07997 * 119.98229 * 0.02562 * 22 21 3 39 39 H 1.08007 * 119.98115 * 180.27537 * 23 22 21 40 40 H 1.07994 * 120.01996 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1267 -1.0197 5 7 3.1337 1.2735 0.5368 6 6 3.2620 2.3421 -0.2745 7 8 2.9731 2.2501 -1.4488 8 6 3.7631 3.6516 0.2779 9 1 3.3281 3.8208 1.2629 10 7 3.3741 4.7443 -0.6235 11 6 5.2880 3.6055 0.3949 12 6 5.7865 4.8845 1.0705 13 6 7.2885 4.8395 1.1852 14 1 7.8329 3.9839 0.8138 15 6 7.9674 5.8900 1.7653 16 7 9.2781 5.8504 1.8658 17 14 7.0256 7.3694 2.4083 18 1 6.6615 7.1446 3.8303 19 1 7.8757 8.5823 2.3009 20 1 5.7909 7.5576 1.6050 21 6 3.1488 -1.1319 0.8576 22 6 3.4829 -0.9025 2.1792 23 6 3.9387 -1.9417 2.9679 24 6 4.0720 -3.2109 2.4325 25 17 4.6510 -4.5141 3.4224 26 6 3.7437 -3.4409 1.1090 27 6 3.2816 -2.4009 0.3204 28 9 2.9600 -2.6245 -0.9726 29 1 -1.0500 0.0005 -0.0001 30 1 3.3644 1.3472 1.4762 31 1 3.6423 5.6396 -0.2434 32 1 3.7653 4.6103 -1.5439 33 1 5.5806 2.7416 0.9917 34 1 5.7265 3.5254 -0.5998 35 1 5.4939 5.7485 0.4737 36 1 5.3481 4.9647 2.0652 37 1 9.7558 6.5896 2.2736 38 1 3.3830 0.0884 2.5969 39 1 4.1952 -1.7624 4.0016 40 1 3.8473 -4.4312 0.6909 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574505404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:25 Heat of formation + Delta-G solvation = -31.412826 kcal Electronic energy + Delta-G solvation = -25796.179943 eV Core-core repulsion = 21744.749671 eV Total energy + Delta-G solvation = -4051.430272 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.16131 -41.43140 -40.27214 -37.92059 -37.24753 -36.58593 -34.80100 -33.68133 -32.24582 -32.06865 -31.83238 -28.89577 -27.51926 -25.36173 -24.17894 -23.16273 -22.24362 -21.33155 -19.60519 -19.39765 -18.89907 -18.39596 -18.03100 -17.36011 -16.93707 -16.64007 -16.34438 -16.23568 -16.05056 -15.74058 -15.61721 -15.26481 -14.79563 -14.69520 -14.65385 -14.57371 -14.32118 -14.17450 -13.49953 -13.21568 -13.06995 -12.71064 -12.69341 -12.42704 -12.14099 -12.08125 -11.84199 -11.73348 -11.66784 -11.38538 -11.34452 -10.84662 -10.74936 -10.56834 -10.17483 -9.82669 -9.66930 -8.27496 -6.33004 -0.30800 -0.08458 0.90066 1.35581 1.40096 1.42775 1.51945 1.53617 1.72814 2.21735 2.27127 2.38351 3.01533 3.08349 3.22011 3.46859 3.49973 3.66313 3.72429 3.83604 3.93244 4.09286 4.17320 4.28600 4.33164 4.59795 4.62956 4.73227 4.76867 4.89949 4.93801 4.96658 4.97963 5.21900 5.38979 5.47472 5.48976 5.65003 6.03585 6.27464 6.35962 6.48693 6.54462 6.75920 7.08899 7.31924 8.89216 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.002921 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.380568 B = 9581.989885 C =11475.292068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.242 4.242 3 C 0.307 3.693 4 H 0.096 0.904 5 N -0.711 5.711 6 C 0.530 3.470 7 O -0.563 6.563 8 C 0.084 3.916 9 H 0.126 0.874 10 N -0.831 5.831 11 C -0.120 4.120 12 C -0.006 4.006 13 C -0.533 4.533 14 H 0.026 0.974 15 C 0.002 3.998 16 N -0.954 5.954 17 Si 0.953 3.047 18 H -0.264 1.264 19 H -0.292 1.292 20 H -0.238 1.238 21 C -0.127 4.127 22 C -0.067 4.067 23 C -0.106 4.106 24 C -0.009 4.009 25 Cl -0.048 7.048 26 C -0.142 4.142 27 C 0.113 3.887 28 F -0.137 7.137 29 H 0.254 0.746 30 H 0.417 0.583 31 H 0.356 0.644 32 H 0.345 0.655 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.025 0.975 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.165 0.835 39 H 0.170 0.830 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.734 -18.188 4.600 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.244 4.244 3 C 0.202 3.798 4 H 0.114 0.886 5 N -0.367 5.367 6 C 0.317 3.683 7 O -0.440 6.440 8 C -0.031 4.031 9 H 0.143 0.857 10 N -0.363 5.363 11 C -0.160 4.160 12 C -0.044 4.044 13 C -0.571 4.571 14 H 0.045 0.955 15 C -0.195 4.195 16 N -0.594 5.594 17 Si 0.776 3.224 18 H -0.188 1.188 19 H -0.219 1.219 20 H -0.161 1.161 21 C -0.128 4.128 22 C -0.085 4.085 23 C -0.124 4.124 24 C -0.036 4.036 25 Cl -0.019 7.019 26 C -0.161 4.161 27 C 0.093 3.907 28 F -0.116 7.116 29 H 0.270 0.730 30 H 0.257 0.743 31 H 0.172 0.828 32 H 0.158 0.842 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.182 0.818 39 H 0.188 0.812 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.483 -18.516 3.978 26.463 hybrid contribution 1.446 0.552 0.091 1.550 sum -17.037 -17.964 4.068 25.090 Atomic orbital electron populations 1.25815 0.96658 0.96436 0.98024 1.23237 0.94630 1.03602 1.02900 1.15952 0.84232 0.82000 0.97629 0.88599 1.45978 1.67408 1.09288 1.14025 1.20948 0.75627 0.85773 0.85935 1.90656 1.50486 1.84611 1.18225 1.21447 0.94258 0.88859 0.98584 0.85655 1.58742 1.67014 1.04519 1.06061 1.22047 0.93150 1.00181 1.00595 1.19507 0.93814 0.94468 0.96576 1.21441 0.92660 1.04180 1.38855 0.95511 1.26077 0.95625 1.01998 0.95771 1.70083 1.09112 1.33824 1.46392 0.85617 0.79463 0.77539 0.79761 1.18839 1.21882 1.16057 1.19788 1.03985 0.92659 0.96410 1.21007 0.95865 1.00877 0.90778 1.21419 0.98791 0.89826 1.02382 1.20783 1.00584 0.90690 0.91582 1.98410 1.86759 1.47855 1.68834 1.21085 1.01910 1.00250 0.92864 1.17323 1.00874 0.93435 0.79099 1.91525 1.90341 1.95231 1.34454 0.72964 0.74252 0.82806 0.84166 0.91233 0.93976 0.95725 0.94811 0.92594 0.81792 0.81247 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 19.25 74.32 1.43 -1.55 16 2 C -0.24 -5.83 12.82 31.12 0.40 -5.44 16 3 C 0.31 7.36 2.40 42.44 0.10 7.46 16 4 H 0.10 2.78 7.23 -2.39 -0.02 2.76 16 5 N -0.71 -16.40 4.96 -454.84 -2.26 -18.66 16 6 C 0.53 15.81 7.02 87.66 0.62 16.42 16 7 O -0.56 -21.02 15.91 -3.03 -0.05 -21.07 16 8 C 0.08 2.37 3.21 44.17 0.14 2.52 16 9 H 0.13 2.91 8.14 -2.39 -0.02 2.90 16 10 N -0.83 -24.38 8.93 -171.80 -1.53 -25.91 16 11 C -0.12 -4.14 4.78 30.60 0.15 -4.00 16 12 C -0.01 -0.25 3.81 29.85 0.11 -0.14 16 13 C -0.53 -29.07 9.66 25.60 0.25 -28.82 16 14 H 0.03 1.64 7.99 -2.91 -0.02 1.62 16 15 C 0.00 0.11 5.47 84.65 0.46 0.57 16 16 N -0.95 -58.41 13.96 21.45 0.30 -58.11 16 17 Si 0.95 41.45 27.47 68.60 1.88 43.33 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 19 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 21 C -0.13 -2.48 5.02 -19.82 -0.10 -2.58 16 22 C -0.07 -0.97 9.24 22.26 0.21 -0.77 16 23 C -0.11 -1.37 9.83 22.30 0.22 -1.15 16 24 C -0.01 -0.14 6.32 22.32 0.14 0.00 16 25 Cl -0.05 -0.66 28.96 -2.72 -0.08 -0.74 16 26 C -0.14 -2.30 9.81 22.33 0.22 -2.08 16 27 C 0.11 2.26 7.24 22.37 0.16 2.42 16 28 F -0.14 -3.17 16.57 44.97 0.75 -2.43 16 29 H 0.25 2.71 7.80 -4.42 -0.03 2.68 16 30 H 0.42 6.98 6.20 -92.71 -0.57 6.40 16 31 H 0.36 9.79 7.55 -89.69 -0.68 9.11 16 32 H 0.35 10.74 8.58 -89.69 -0.77 9.97 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.02 0.98 5.93 -2.39 -0.01 0.97 16 36 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 37 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.16 1.62 6.06 -2.91 -0.02 1.60 16 39 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 40 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -73.16 367.15 2.56 -70.59 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.96 Total: 30.12 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 4.51 Total: -17.13 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -3.49 Total: -102.68 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.05 Total: -21.07 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.75 Total: -2.43 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.88 Total: 43.33 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -73.16 2.56 -70.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574505404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.182 kcal (2) G-P(sol) polarization free energy of solvation -73.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds