Wall clock time and date at job start Tue Mar 31 2020 21:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35821 * 117.00265 * 2 1 4 4 C 1.39359 * 119.86132 * 90.00244 * 3 2 1 5 5 F 1.35102 * 119.86627 * 359.95418 * 4 3 2 6 6 C 1.37659 * 120.26899 * 179.97438 * 4 3 2 7 7 C 1.39979 * 119.98213 * 359.97438 * 6 4 3 8 8 C 1.47183 * 120.14326 * 179.97438 * 7 6 4 9 9 O 1.21658 * 120.00008 * 185.95269 * 8 7 6 10 10 N 1.34775 * 119.99932 * 5.95554 * 8 7 6 11 11 C 1.40543 * 120.00410 * 179.97438 * 10 8 7 12 12 C 1.40672 * 126.08009 * 0.02562 * 11 10 8 13 13 N 1.30905 * 108.38457 * 179.97438 * 12 11 10 14 14 N 1.40068 * 108.41634 * 0.02562 * 13 12 11 15 15 C 1.37316 * 126.06997 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99920 * 179.97438 * 15 14 13 17 17 C 1.38986 * 120.00186 * 359.96795 * 15 14 13 18 18 N 1.31296 * 119.99645 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46800 * 60.00104 * 19 17 15 21 21 H 1.48499 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47174 * 300.00503 * 19 17 15 23 23 C 1.35687 * 126.09194 * 179.71531 * 11 10 8 24 24 C 1.40405 * 119.71816 * 0.02562 * 7 6 4 25 25 N 1.39175 * 120.13090 * 179.97438 * 24 7 6 26 26 C 1.38661 * 119.85869 * 269.97543 * 3 2 1 27 27 F 1.35097 * 119.99225 * 0.04961 * 26 3 2 28 28 H 1.09005 * 109.47067 * 300.00234 * 1 2 3 29 29 H 1.08999 * 109.46639 * 59.99488 * 1 2 3 30 30 H 1.08995 * 109.47402 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.00772 * 179.72178 * 6 4 3 32 32 H 0.97006 * 120.00268 * 359.97438 * 10 8 7 33 33 H 1.07998 * 125.80551 * 359.94552 * 12 11 10 34 34 H 0.97003 * 119.99621 * 180.02562 * 18 17 15 35 35 H 1.08001 * 126.24249 * 0.03501 * 23 11 10 36 36 H 0.96998 * 119.99654 * 204.88582 * 25 24 7 37 37 H 0.97001 * 120.00191 * 24.88230 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2101 0.0000 4 6 2.3608 1.8283 1.2086 5 9 2.0508 1.2219 2.3754 6 6 2.9863 3.0546 1.2184 7 6 3.3087 3.6851 0.0109 8 6 3.9769 4.9964 0.0172 9 8 4.1586 5.5916 -1.0281 10 7 4.3876 5.5378 1.1811 11 6 5.0262 6.7898 1.1872 12 6 5.3005 7.5854 0.0600 13 7 5.9024 8.6764 0.4612 14 7 6.0365 8.6210 1.8544 15 6 6.6160 9.5788 2.6496 16 1 6.6668 9.4346 3.7187 17 6 7.1374 10.7337 2.0786 18 7 7.0752 10.9091 0.7788 19 14 7.9263 12.0364 3.1602 20 1 9.0778 11.4446 3.8878 21 1 8.3998 13.1615 2.3146 22 1 6.9282 12.5387 4.1382 23 6 5.4827 7.4489 2.2819 24 6 2.9909 3.0616 -1.2064 25 7 3.3071 3.6810 -2.4119 26 6 2.3596 1.8250 -1.2025 27 9 2.0511 1.2207 -2.3708 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.2245 3.5320 2.1574 32 1 4.2425 5.0634 2.0147 33 1 5.0563 7.3380 -0.9625 34 1 7.4394 11.7150 0.3803 35 1 5.4219 7.1070 3.3046 36 1 2.8025 3.4694 -3.2128 37 1 4.0320 4.3243 -2.4513 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583623482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:09 Heat of formation + Delta-G solvation = -35.118999 kcal Electronic energy + Delta-G solvation = -28203.937076 eV Core-core repulsion = 23620.469373 eV Total energy + Delta-G solvation = -4583.467702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.12342 -49.01898 -40.53128 -39.64989 -38.90819 -37.34335 -34.95442 -33.87966 -33.17525 -30.92176 -30.21408 -28.70539 -27.93464 -27.20254 -25.02599 -23.86158 -22.78214 -21.35070 -20.64701 -19.55798 -18.69590 -18.40793 -18.01029 -17.44216 -16.76797 -16.54354 -16.38831 -15.69356 -15.63609 -15.48826 -15.37345 -15.19057 -15.04311 -14.78934 -14.62596 -14.32608 -13.73955 -13.30158 -13.16975 -13.10726 -12.86610 -12.65941 -12.29826 -12.03582 -11.72638 -11.50504 -11.28552 -11.02630 -10.59863 -10.54471 -10.43714 -10.29289 -9.41103 -9.24610 -9.11486 -8.88436 -8.13545 -7.84155 -6.77938 -6.61409 -4.28636 0.24203 0.84470 2.43938 2.93135 3.01308 3.05823 3.07914 3.28113 3.39161 3.64981 3.72221 3.74864 3.83187 4.10764 4.37236 4.44217 4.51203 4.84722 4.90591 4.90881 4.96903 5.00542 5.23497 5.32099 5.49353 5.51879 5.65074 6.05580 6.17957 6.37055 6.79275 6.87471 6.93356 6.97373 7.15238 7.24508 7.69889 7.78842 8.04017 8.19018 8.52322 8.71328 9.30468 9.59455 10.34356 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.027747 B = 0.002364 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.869870 B =11841.259214 C =12763.042028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.322 6.322 3 C 0.093 3.907 4 C 0.045 3.955 5 F -0.128 7.128 6 C -0.073 4.073 7 C -0.157 4.157 8 C 0.553 3.447 9 O -0.536 6.536 10 N -0.609 5.609 11 C -0.064 4.064 12 C -0.029 4.029 13 N -0.261 5.261 14 N -0.140 5.140 15 C -0.322 4.322 16 H 0.117 0.883 17 C 0.046 3.954 18 N -0.769 5.769 19 Si 0.935 3.065 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.266 1.266 23 C -0.082 4.082 24 C 0.251 3.749 25 N -0.844 5.844 26 C 0.020 3.980 27 F -0.125 7.125 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.151 0.849 32 H 0.398 0.602 33 H 0.177 0.823 34 H 0.276 0.724 35 H 0.147 0.853 36 H 0.399 0.601 37 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.473 -16.812 -0.124 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.238 6.238 3 C 0.046 3.954 4 C 0.023 3.977 5 F -0.107 7.107 6 C -0.093 4.093 7 C -0.165 4.165 8 C 0.340 3.660 9 O -0.416 6.416 10 N -0.250 5.250 11 C -0.169 4.169 12 C -0.205 4.205 13 N -0.092 5.092 14 N 0.093 4.907 15 C -0.455 4.455 16 H 0.134 0.866 17 C -0.171 4.171 18 N -0.395 5.395 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.233 4.233 24 C 0.138 3.862 25 N -0.389 5.389 26 C -0.005 4.005 27 F -0.103 7.103 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.168 0.832 32 H 0.232 0.768 33 H 0.194 0.806 34 H 0.087 0.913 35 H 0.164 0.836 36 H 0.228 0.772 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -9.644 -15.265 -1.400 18.110 hybrid contribution -0.400 -0.537 0.981 1.187 sum -10.044 -15.801 -0.419 18.728 Atomic orbital electron populations 1.23127 0.77750 1.03958 1.01214 1.86046 1.20721 1.22955 1.94117 1.18463 0.99348 0.87435 0.90126 1.17156 1.06590 0.93283 0.80717 1.91511 1.91467 1.82830 1.44865 1.21085 0.96482 0.92938 0.98803 1.19267 1.09304 0.96906 0.91066 1.17404 0.80223 0.84194 0.84131 1.90488 1.57809 1.62036 1.31257 1.42331 1.55815 1.18607 1.08245 1.17224 1.15164 0.89863 0.94670 1.24120 1.04253 0.93178 0.98898 1.78271 1.22901 1.19548 0.88449 1.44558 1.31114 1.10227 1.04779 1.19852 1.37485 0.97315 0.90801 0.86564 1.25652 0.96579 0.98631 0.96267 1.70203 1.34137 1.25407 1.09747 0.85883 0.79580 0.79258 0.79381 1.19104 1.20111 1.19118 1.21269 1.12463 0.92388 0.97227 1.17420 0.92361 0.88540 0.87893 1.42881 1.40323 1.49047 1.06695 1.17058 1.10338 0.91747 0.81336 1.91474 1.91594 1.82517 1.44761 0.92882 0.93030 0.88101 0.83168 0.76792 0.80620 0.91334 0.83576 0.77193 0.73607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.13 101.05 1.12 1.39 16 2 O -0.32 -3.71 10.11 -19.18 -0.19 -3.90 16 3 C 0.09 1.11 5.73 -39.01 -0.22 0.88 16 4 C 0.04 0.51 7.29 -39.38 -0.29 0.22 16 5 F -0.13 -1.49 17.10 2.25 0.04 -1.45 16 6 C -0.07 -0.79 9.48 -39.14 -0.37 -1.16 16 7 C -0.16 -2.03 5.89 -104.80 -0.62 -2.65 16 8 C 0.55 9.02 7.70 -12.63 -0.10 8.92 16 9 O -0.54 -10.08 10.95 5.23 0.06 -10.02 16 10 N -0.61 -10.12 5.41 -11.03 -0.06 -10.18 16 11 C -0.06 -1.39 6.90 -83.85 -0.58 -1.97 16 12 C -0.03 -0.72 10.85 -17.03 -0.18 -0.91 16 13 N -0.26 -7.33 10.39 30.80 0.32 -7.01 16 14 N -0.14 -3.72 3.74 -11.41 -0.04 -3.76 16 15 C -0.32 -8.29 10.25 -14.82 -0.15 -8.44 16 16 H 0.12 2.65 7.83 -52.49 -0.41 2.24 16 17 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 18 N -0.77 -21.00 11.81 55.49 0.66 -20.34 16 19 Si 0.94 18.47 29.55 -169.99 -5.02 13.45 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 23 C -0.08 -1.86 11.49 -16.39 -0.19 -2.04 16 24 C 0.25 3.14 6.76 -83.49 -0.56 2.58 16 25 N -0.84 -9.98 8.42 32.59 0.27 -9.71 16 26 C 0.02 0.24 7.30 -39.20 -0.29 -0.04 16 27 F -0.12 -1.49 16.63 2.25 0.04 -1.45 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.15 1.27 6.44 -52.48 -0.34 0.93 16 32 H 0.40 5.05 6.88 -40.82 -0.28 4.77 16 33 H 0.18 4.28 5.91 -52.49 -0.31 3.97 16 34 H 0.28 6.91 8.31 -40.82 -0.34 6.58 16 35 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 36 H 0.40 3.82 8.57 -40.82 -0.35 3.47 16 37 H 0.42 5.65 6.13 -40.82 -0.25 5.40 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -32.05 334.26 -4.19 -36.24 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -2.77 Total: 15.26 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.52 Total: -2.16 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 1.15 Total: -51.00 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.14 Total: -13.93 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.05 -4.19 -36.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583623482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.120 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds