Wall clock time and date at job start Tue Mar 31 2020 21:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35821 * 117.00265 * 2 1 4 4 C 1.39359 * 119.86132 * 90.00244 * 3 2 1 5 5 F 1.35102 * 119.86627 * 359.95418 * 4 3 2 6 6 C 1.37659 * 120.26899 * 179.97438 * 4 3 2 7 7 C 1.39979 * 119.98213 * 359.97438 * 6 4 3 8 8 C 1.47183 * 120.14326 * 179.97438 * 7 6 4 9 9 O 1.21658 * 120.00008 * 185.95269 * 8 7 6 10 10 N 1.34775 * 119.99932 * 5.95554 * 8 7 6 11 11 C 1.40543 * 120.00410 * 179.97438 * 10 8 7 12 12 C 1.40672 * 126.08009 * 0.02562 * 11 10 8 13 13 N 1.30905 * 108.38457 * 179.97438 * 12 11 10 14 14 N 1.40068 * 108.41634 * 0.02562 * 13 12 11 15 15 C 1.37316 * 126.06997 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99920 * 179.97438 * 15 14 13 17 17 C 1.38986 * 120.00186 * 359.96795 * 15 14 13 18 18 N 1.31296 * 119.99645 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46800 * 60.00104 * 19 17 15 21 21 H 1.48499 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47174 * 300.00503 * 19 17 15 23 23 C 1.35687 * 126.09194 * 179.71531 * 11 10 8 24 24 C 1.40405 * 119.71816 * 0.02562 * 7 6 4 25 25 N 1.39175 * 120.13090 * 179.97438 * 24 7 6 26 26 C 1.38661 * 119.85869 * 269.97543 * 3 2 1 27 27 F 1.35097 * 119.99225 * 0.04961 * 26 3 2 28 28 H 1.09005 * 109.47067 * 300.00234 * 1 2 3 29 29 H 1.08999 * 109.46639 * 59.99488 * 1 2 3 30 30 H 1.08995 * 109.47402 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.00772 * 179.72178 * 6 4 3 32 32 H 0.97006 * 120.00268 * 359.97438 * 10 8 7 33 33 H 1.07998 * 125.80551 * 359.94552 * 12 11 10 34 34 H 0.97003 * 119.99621 * 180.02562 * 18 17 15 35 35 H 1.08001 * 126.24249 * 0.03501 * 23 11 10 36 36 H 0.96998 * 119.99654 * 204.88582 * 25 24 7 37 37 H 0.97001 * 120.00191 * 24.88230 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2101 0.0000 4 6 2.3608 1.8283 1.2086 5 9 2.0508 1.2219 2.3754 6 6 2.9863 3.0546 1.2184 7 6 3.3087 3.6851 0.0109 8 6 3.9769 4.9964 0.0172 9 8 4.1586 5.5916 -1.0281 10 7 4.3876 5.5378 1.1811 11 6 5.0262 6.7898 1.1872 12 6 5.3005 7.5854 0.0600 13 7 5.9024 8.6764 0.4612 14 7 6.0365 8.6210 1.8544 15 6 6.6160 9.5788 2.6496 16 1 6.6668 9.4346 3.7187 17 6 7.1374 10.7337 2.0786 18 7 7.0752 10.9091 0.7788 19 14 7.9263 12.0364 3.1602 20 1 9.0778 11.4446 3.8878 21 1 8.3998 13.1615 2.3146 22 1 6.9282 12.5387 4.1382 23 6 5.4827 7.4489 2.2819 24 6 2.9909 3.0616 -1.2064 25 7 3.3071 3.6810 -2.4119 26 6 2.3596 1.8250 -1.2025 27 9 2.0511 1.2207 -2.3708 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.2245 3.5320 2.1574 32 1 4.2425 5.0634 2.0147 33 1 5.0563 7.3380 -0.9625 34 1 7.4394 11.7150 0.3803 35 1 5.4219 7.1070 3.3046 36 1 2.8025 3.4694 -3.2128 37 1 4.0320 4.3243 -2.4513 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583623482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:08 Heat of formation + Delta-G solvation = -57.799131 kcal Electronic energy + Delta-G solvation = -28204.920560 eV Core-core repulsion = 23620.469373 eV Total energy + Delta-G solvation = -4584.451187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.05509 -49.91401 -41.89951 -41.06648 -40.06635 -38.44623 -36.25619 -35.34237 -34.66256 -32.34493 -31.73265 -29.79149 -29.33484 -28.12108 -26.76838 -24.94038 -23.77566 -22.94187 -22.14760 -21.23916 -19.82107 -19.38333 -19.10540 -18.94624 -17.73028 -17.60276 -17.39798 -17.33203 -16.89984 -16.62506 -16.37459 -16.26778 -16.05594 -15.91485 -15.77497 -15.55055 -15.15289 -15.04646 -14.79081 -14.16054 -13.96036 -13.46934 -13.45933 -13.32513 -13.25572 -12.86010 -12.84137 -12.71702 -12.13194 -11.85211 -11.45598 -11.25790 -10.99700 -10.83946 -10.73736 -10.10318 -10.04428 -8.83664 -8.47668 -8.45077 -6.21651 -0.71942 -0.07267 1.21628 1.41489 1.45234 1.57286 1.81962 1.95448 2.16299 2.21037 2.33103 2.65111 2.76523 2.79653 2.94125 3.11497 3.16266 3.54457 3.59828 4.04557 4.26829 4.35281 4.39760 4.46372 4.56404 4.58912 4.63882 4.69797 4.72927 5.02670 5.10564 5.20139 5.31259 5.41959 5.97514 6.11878 6.25430 6.34767 6.63664 6.73448 6.78169 7.30784 7.48276 7.70828 8.53939 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.027747 B = 0.002364 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.869870 B =11841.259214 C =12763.042028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.339 6.339 3 C 0.102 3.898 4 C 0.041 3.959 5 F -0.127 7.127 6 C -0.051 4.051 7 C -0.170 4.170 8 C 0.556 3.444 9 O -0.563 6.563 10 N -0.604 5.604 11 C -0.045 4.045 12 C -0.053 4.053 13 N -0.311 5.311 14 N -0.169 5.169 15 C -0.353 4.353 16 H 0.141 0.859 17 C -0.006 4.006 18 N -0.824 5.824 19 Si 1.017 2.983 20 H -0.254 1.254 21 H -0.280 1.280 22 H -0.254 1.254 23 C -0.078 4.078 24 C 0.251 3.749 25 N -0.843 5.843 26 C 0.014 3.986 27 F -0.126 7.126 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.124 0.876 31 H 0.178 0.822 32 H 0.419 0.581 33 H 0.174 0.826 34 H 0.276 0.724 35 H 0.189 0.811 36 H 0.408 0.592 37 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.329 -18.428 2.055 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.256 6.256 3 C 0.055 3.945 4 C 0.019 3.981 5 F -0.106 7.106 6 C -0.071 4.071 7 C -0.179 4.179 8 C 0.346 3.654 9 O -0.444 6.444 10 N -0.248 5.248 11 C -0.151 4.151 12 C -0.229 4.229 13 N -0.143 5.143 14 N 0.063 4.937 15 C -0.484 4.484 16 H 0.158 0.842 17 C -0.218 4.218 18 N -0.452 5.452 19 Si 0.836 3.164 20 H -0.178 1.178 21 H -0.205 1.205 22 H -0.178 1.178 23 C -0.228 4.228 24 C 0.138 3.862 25 N -0.388 5.388 26 C -0.011 4.011 27 F -0.105 7.105 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.142 0.858 31 H 0.195 0.805 32 H 0.257 0.743 33 H 0.191 0.809 34 H 0.085 0.915 35 H 0.206 0.794 36 H 0.239 0.761 37 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -10.544 -16.947 0.796 19.975 hybrid contribution -0.304 -0.328 0.227 0.502 sum -10.848 -17.275 1.023 20.424 Atomic orbital electron populations 1.23397 0.75657 1.05810 1.01804 1.86010 1.22681 1.22742 1.94183 1.18611 0.98439 0.87241 0.90200 1.17104 1.06972 0.93448 0.80577 1.91518 1.91501 1.82835 1.44728 1.21231 0.94518 0.92337 0.98966 1.18886 1.11105 0.95756 0.92150 1.17886 0.79192 0.84891 0.83431 1.90489 1.58508 1.63043 1.32340 1.42199 1.55854 1.17082 1.09657 1.17244 1.13575 0.91062 0.93226 1.24249 1.05079 0.93740 0.99833 1.78161 1.24524 1.21343 0.90248 1.44818 1.32771 1.11807 1.04329 1.20555 1.38060 0.97861 0.91966 0.84198 1.26839 0.96582 1.00826 0.97523 1.70386 1.36341 1.26355 1.12158 0.84680 0.78824 0.75668 0.77233 1.17779 1.20457 1.17776 1.22025 1.10548 0.91041 0.99224 1.17522 0.92060 0.88739 0.87917 1.42886 1.40077 1.48635 1.07165 1.16984 1.10922 0.91695 0.81516 1.91471 1.91653 1.82496 1.44831 0.92150 0.92582 0.85762 0.80516 0.74266 0.80928 0.91458 0.79422 0.76085 0.74366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.13 113.37 1.26 1.61 16 2 O -0.34 -7.06 10.11 -91.54 -0.93 -7.99 16 3 C 0.10 2.20 5.73 22.64 0.13 2.33 16 4 C 0.04 0.82 7.29 22.40 0.16 0.98 16 5 F -0.13 -2.58 17.10 44.97 0.77 -1.81 16 6 C -0.05 -0.95 9.48 22.55 0.21 -0.73 16 7 C -0.17 -4.10 5.89 -19.98 -0.12 -4.21 16 8 C 0.56 17.51 7.70 86.59 0.67 18.18 16 9 O -0.56 -21.24 10.95 -4.21 -0.05 -21.29 16 10 N -0.60 -18.91 5.41 -307.06 -1.66 -20.57 16 11 C -0.04 -1.93 6.90 37.75 0.26 -1.67 16 12 C -0.05 -2.75 10.85 85.43 0.93 -1.83 16 13 N -0.31 -18.13 10.39 -56.45 -0.59 -18.72 16 14 N -0.17 -9.06 3.74 -190.01 -0.71 -9.77 16 15 C -0.35 -18.24 10.25 84.01 0.86 -17.38 16 16 H 0.14 6.22 7.83 -2.91 -0.02 6.19 16 17 C -0.01 -0.31 5.50 84.95 0.47 0.16 16 18 N -0.82 -46.83 11.81 21.66 0.26 -46.57 16 19 Si 1.02 37.87 29.55 68.60 2.03 39.90 16 20 H -0.25 -8.83 7.11 99.48 0.71 -8.13 16 21 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 23 C -0.08 -3.42 11.49 83.38 0.96 -2.46 16 24 C 0.25 5.97 6.76 38.65 0.26 6.23 16 25 N -0.84 -19.53 8.42 -50.79 -0.43 -19.96 16 26 C 0.01 0.31 7.30 22.52 0.16 0.47 16 27 F -0.13 -2.83 16.63 44.97 0.75 -2.08 16 28 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.18 2.27 6.44 -2.91 -0.02 2.25 16 32 H 0.42 9.27 6.88 -92.70 -0.64 8.63 16 33 H 0.17 8.78 5.91 -2.91 -0.02 8.77 16 34 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.19 6.37 8.06 -2.91 -0.02 6.35 16 36 H 0.41 7.62 8.57 -92.71 -0.79 6.83 16 37 H 0.42 11.19 6.13 -92.71 -0.57 10.63 16 Total: -1.00 -72.27 334.26 4.87 -67.40 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: -0.79 Total: 39.77 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 6.22 Total: 1.69 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -3.13 Total: -115.58 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.97 Total: -29.28 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 1.52 Total: -3.89 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -72.27 4.87 -67.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583623482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.600 kcal (2) G-P(sol) polarization free energy of solvation -72.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds