Wall clock time and date at job start Tue Mar 31 2020 21:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40062 * 125.94564 * 2 1 4 4 C 1.31933 * 108.22055 * 179.97438 * 3 2 1 5 5 C 1.47571 * 125.98829 * 179.97438 * 4 3 2 6 6 O 1.21594 * 119.99826 * 174.68778 * 5 4 3 7 7 N 1.34779 * 120.00123 * 354.68976 * 5 4 3 8 8 C 1.37033 * 119.99987 * 5.48087 * 7 5 4 9 9 H 1.08002 * 120.00060 * 318.78029 * 8 7 5 10 10 C 1.38954 * 120.00147 * 138.77831 * 8 7 5 11 11 N 1.31384 * 119.99965 * 177.52797 * 10 8 7 12 12 Si 1.86796 * 119.99825 * 357.52765 * 10 8 7 13 13 H 1.48494 * 109.47331 * 90.95295 * 12 10 8 14 14 H 1.48504 * 109.47280 * 210.95697 * 12 10 8 15 15 H 1.48507 * 109.47217 * 330.95102 * 12 10 8 16 16 C 1.39340 * 119.99799 * 185.47905 * 7 5 4 17 17 C 1.39091 * 119.69986 * 141.85754 * 16 7 5 18 18 C 1.38376 * 119.09761 * 179.70050 * 17 16 7 19 19 C 1.38826 * 118.49463 * 0.58259 * 18 17 16 20 20 C 1.38151 * 119.31352 * 359.43733 * 19 18 17 21 21 N 1.31877 * 120.85329 * 0.27590 * 20 19 18 22 22 C 1.41114 * 108.02114 * 0.23998 * 4 3 2 23 23 C 1.35568 * 107.79649 * 359.60228 * 22 4 3 24 24 O 1.35773 * 126.07533 * 180.14675 * 23 22 4 25 25 C 1.42901 * 116.99591 * 3.67596 * 24 23 22 26 26 F 1.39899 * 109.47219 * 301.53527 * 25 24 23 27 27 F 1.39898 * 109.47470 * 61.53623 * 25 24 23 28 28 H 1.09000 * 109.47547 * 95.11430 * 1 2 3 29 29 H 1.09000 * 109.47030 * 215.11630 * 1 2 3 30 30 H 1.09004 * 109.47024 * 335.11398 * 1 2 3 31 31 H 0.96999 * 119.99821 * 179.97438 * 11 10 8 32 32 H 1.08006 * 120.44645 * 359.97438 * 17 16 7 33 33 H 1.08002 * 120.74817 * 180.31406 * 18 17 16 34 34 H 1.07993 * 120.34472 * 179.71303 * 19 18 17 35 35 H 1.08003 * 119.57090 * 180.25958 * 20 19 18 36 36 H 1.08004 * 126.10222 * 179.72830 * 22 4 3 37 37 H 1.09002 * 109.46883 * 181.53857 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1339 0.0000 4 6 3.5439 0.7322 0.0006 5 6 4.7334 1.6056 0.0002 6 8 5.8440 1.1203 0.0983 7 7 4.5888 2.9412 -0.1087 8 6 3.3364 3.4972 -0.1061 9 1 2.5340 3.0235 -0.6522 10 6 3.0987 4.6707 0.5991 11 7 1.9104 5.2301 0.5621 12 14 4.4685 5.4527 1.5998 13 1 5.2048 6.4267 0.7548 14 1 3.8865 6.1548 2.7719 15 1 5.4031 4.3982 2.0686 16 6 5.7129 3.7565 -0.2240 17 6 5.6787 4.8621 -1.0672 18 6 6.8000 5.6668 -1.1675 19 6 7.9253 5.3300 -0.4276 20 6 7.8891 4.2168 0.3897 21 7 6.8040 3.4715 0.4697 22 6 3.5512 -0.6789 -0.0047 23 6 2.2625 -1.0999 0.0006 24 8 1.8434 -2.3913 0.0009 25 6 2.8521 -3.4007 0.0767 26 9 3.7319 -3.2628 -1.0023 27 9 3.5597 -3.2638 1.2757 28 1 -0.3634 -0.0916 -1.0235 29 1 -0.3633 -0.8406 0.5912 30 1 -0.3633 0.9323 0.4325 31 1 1.7444 6.0490 1.0547 32 1 4.7876 5.0919 -1.6326 33 1 6.8010 6.5348 -1.8102 34 1 8.8182 5.9345 -0.4868 35 1 8.7608 3.9533 0.9704 36 1 4.4271 -1.3107 -0.0097 37 1 2.3848 -4.3848 0.0409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585098984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:31 Heat of formation + Delta-G solvation = -8.556074 kcal Electronic energy + Delta-G solvation = -29644.741248 eV Core-core repulsion = 25062.425401 eV Total energy + Delta-G solvation = -4582.315847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.33270 -47.40212 -41.06683 -40.10811 -38.34425 -37.68480 -35.15448 -32.94821 -32.22450 -31.63824 -29.93419 -29.07567 -26.88720 -26.18001 -25.23528 -23.60963 -22.66352 -21.59283 -21.12386 -19.43711 -18.49445 -18.31734 -18.02373 -17.70947 -16.39467 -16.03855 -15.90298 -15.72575 -15.53204 -15.12828 -14.60643 -14.22564 -14.10586 -13.94604 -13.80513 -13.74052 -13.62441 -13.44053 -13.30038 -12.72818 -12.60982 -12.53179 -12.44186 -12.31026 -11.95028 -11.87277 -11.37910 -11.15118 -10.86590 -10.32349 -9.98199 -9.43447 -9.27322 -9.15492 -8.76173 -8.68742 -8.47872 -8.18264 -7.53121 -6.49319 -4.23713 1.60949 1.81298 1.96549 2.07147 2.60435 3.04217 3.14741 3.25645 3.39715 3.40368 3.92729 4.12804 4.15442 4.17631 4.49456 4.52865 4.76503 5.03104 5.08702 5.32161 5.36636 5.39066 5.47232 5.67836 5.69025 5.77651 5.87770 5.90999 6.11009 6.34415 6.42720 6.61669 6.77926 6.81318 7.07811 7.26022 7.50948 7.89632 7.97473 8.24597 8.65324 8.84635 9.14778 9.45543 10.56089 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.015576 B = 0.004234 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.166625 B = 6610.767282 C = 7833.695459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.369 5.369 3 N -0.175 5.175 4 C 0.072 3.928 5 C 0.569 3.431 6 O -0.526 6.526 7 N -0.396 5.396 8 C -0.340 4.340 9 H 0.142 0.858 10 C 0.083 3.917 11 N -0.853 5.853 12 Si 0.838 3.162 13 H -0.255 1.255 14 H -0.287 1.287 15 H -0.238 1.238 16 C 0.353 3.647 17 C -0.179 4.179 18 C -0.066 4.066 19 C -0.221 4.221 20 C 0.113 3.887 21 N -0.480 5.480 22 C -0.269 4.269 23 C 0.239 3.761 24 O -0.320 6.320 25 C 0.427 3.573 26 F -0.193 7.193 27 F -0.193 7.193 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.277 0.723 32 H 0.145 0.855 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 -10.596 -2.373 10.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.160 5.160 3 N -0.003 5.003 4 C -0.095 4.095 5 C 0.357 3.643 6 O -0.400 6.400 7 N -0.111 5.111 8 C -0.467 4.467 9 H 0.158 0.842 10 C -0.127 4.127 11 N -0.487 5.487 12 Si 0.663 3.337 13 H -0.180 1.180 14 H -0.214 1.214 15 H -0.161 1.161 16 C 0.126 3.874 17 C -0.202 4.202 18 C -0.092 4.092 19 C -0.242 4.242 20 C -0.047 4.047 21 N -0.194 5.194 22 C -0.300 4.300 23 C 0.072 3.928 24 O -0.233 6.233 25 C 0.337 3.663 26 F -0.175 7.175 27 F -0.175 7.175 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.807 -10.664 -1.725 10.952 hybrid contribution 1.067 0.666 0.140 1.265 sum -0.741 -9.998 -1.586 10.150 Atomic orbital electron populations 1.21857 0.74008 1.04811 1.03133 1.49357 1.07033 1.01196 1.58444 1.78943 1.00686 1.00127 1.20510 1.21650 0.92527 0.92662 1.02698 1.17312 0.86244 0.81780 0.78975 1.90745 1.24826 1.74704 1.49756 1.41396 1.04694 1.03924 1.61072 1.19671 0.83902 1.10209 1.32919 0.84153 1.25300 0.96151 0.96397 0.94826 1.69598 1.20758 1.18853 1.39541 0.87455 0.83221 0.81766 0.81252 1.17982 1.21419 1.16144 1.18571 0.86893 0.90837 0.91121 1.21730 1.00584 0.97366 1.00490 1.21276 0.92364 0.98041 0.97486 1.21847 0.99523 1.00555 1.02316 1.22432 0.95329 0.90849 0.96046 1.67510 0.99766 1.30931 1.21196 1.21046 0.94554 0.95030 1.19335 1.18689 0.90119 0.80157 1.03794 1.86276 1.35691 1.12081 1.89281 1.23336 0.78210 0.92480 0.72313 1.93137 1.71554 1.96413 1.56371 1.93145 1.80498 1.96450 1.47413 0.90806 0.90074 0.88242 0.91245 0.83754 0.85396 0.85705 0.83449 0.82516 0.79793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.31 11.42 59.85 0.68 1.99 16 2 N -0.37 -6.67 4.04 -68.18 -0.28 -6.94 16 3 N -0.17 -3.94 9.27 33.33 0.31 -3.63 16 4 C 0.07 1.69 6.84 -82.93 -0.57 1.12 16 5 C 0.57 14.73 7.55 -12.45 -0.09 14.64 16 6 O -0.53 -14.26 15.79 5.28 0.08 -14.18 16 7 N -0.40 -10.32 2.51 -61.79 -0.16 -10.48 16 8 C -0.34 -9.04 7.82 -14.96 -0.12 -9.16 16 9 H 0.14 3.88 5.94 -52.49 -0.31 3.57 16 10 C 0.08 2.22 5.20 -17.48 -0.09 2.13 16 11 N -0.85 -23.37 13.95 55.50 0.77 -22.60 16 12 Si 0.84 20.91 24.13 -169.99 -4.10 16.80 16 13 H -0.26 -6.02 5.78 56.52 0.33 -5.69 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.24 -6.33 5.69 56.52 0.32 -6.01 16 16 C 0.35 8.69 3.47 -154.70 -0.54 8.15 16 17 C -0.18 -3.89 6.52 -39.21 -0.26 -4.14 16 18 C -0.07 -1.19 9.44 -39.31 -0.37 -1.56 16 19 C -0.22 -3.77 10.11 -39.40 -0.40 -4.17 16 20 C 0.11 2.21 11.18 -17.56 -0.20 2.01 16 21 N -0.48 -11.60 7.55 -12.35 -0.09 -11.70 16 22 C -0.27 -5.40 8.82 -39.45 -0.35 -5.75 16 23 C 0.24 4.14 7.47 -16.72 -0.12 4.02 16 24 O -0.32 -4.16 10.43 -19.03 -0.20 -4.36 16 25 C 0.43 4.28 6.00 101.05 0.61 4.88 16 26 F -0.19 -2.39 15.75 2.25 0.04 -2.36 16 27 F -0.19 -2.43 16.44 2.25 0.04 -2.40 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.14 3.13 7.55 -52.48 -0.40 2.74 16 33 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.15 2.34 8.06 -52.48 -0.42 1.92 16 36 H 0.16 3.06 6.60 -52.48 -0.35 2.71 16 37 H 0.19 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 325.41 15.07 4.90 4.90 Total: -1.00 -35.21 325.41 -3.79 -39.00 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -3.30 Total: 3.78 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: -1.81 Total: 14.16 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.56 Total: -55.35 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.12 Total: -18.54 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.07 Total: -4.76 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.10 Total: 16.80 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.21 -3.79 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585098984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.444 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds