Wall clock time and date at job start Tue Mar 31 2020 21:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40062 * 125.94564 * 2 1 4 4 C 1.31933 * 108.22055 * 179.97438 * 3 2 1 5 5 C 1.47571 * 125.98829 * 179.97438 * 4 3 2 6 6 O 1.21594 * 119.99826 * 174.68778 * 5 4 3 7 7 N 1.34779 * 120.00123 * 354.68976 * 5 4 3 8 8 C 1.37033 * 119.99987 * 5.48087 * 7 5 4 9 9 H 1.08002 * 120.00060 * 318.78029 * 8 7 5 10 10 C 1.38954 * 120.00147 * 138.77831 * 8 7 5 11 11 N 1.31384 * 119.99965 * 177.52797 * 10 8 7 12 12 Si 1.86796 * 119.99825 * 357.52765 * 10 8 7 13 13 H 1.48494 * 109.47331 * 90.95295 * 12 10 8 14 14 H 1.48504 * 109.47280 * 210.95697 * 12 10 8 15 15 H 1.48507 * 109.47217 * 330.95102 * 12 10 8 16 16 C 1.39340 * 119.99799 * 185.47905 * 7 5 4 17 17 C 1.39091 * 119.69986 * 141.85754 * 16 7 5 18 18 C 1.38376 * 119.09761 * 179.70050 * 17 16 7 19 19 C 1.38826 * 118.49463 * 0.58259 * 18 17 16 20 20 C 1.38151 * 119.31352 * 359.43733 * 19 18 17 21 21 N 1.31877 * 120.85329 * 0.27590 * 20 19 18 22 22 C 1.41114 * 108.02114 * 0.23998 * 4 3 2 23 23 C 1.35568 * 107.79649 * 359.60228 * 22 4 3 24 24 O 1.35773 * 126.07533 * 180.14675 * 23 22 4 25 25 C 1.42901 * 116.99591 * 3.67596 * 24 23 22 26 26 F 1.39899 * 109.47219 * 301.53527 * 25 24 23 27 27 F 1.39898 * 109.47470 * 61.53623 * 25 24 23 28 28 H 1.09000 * 109.47547 * 95.11430 * 1 2 3 29 29 H 1.09000 * 109.47030 * 215.11630 * 1 2 3 30 30 H 1.09004 * 109.47024 * 335.11398 * 1 2 3 31 31 H 0.96999 * 119.99821 * 179.97438 * 11 10 8 32 32 H 1.08006 * 120.44645 * 359.97438 * 17 16 7 33 33 H 1.08002 * 120.74817 * 180.31406 * 18 17 16 34 34 H 1.07993 * 120.34472 * 179.71303 * 19 18 17 35 35 H 1.08003 * 119.57090 * 180.25958 * 20 19 18 36 36 H 1.08004 * 126.10222 * 179.72830 * 22 4 3 37 37 H 1.09002 * 109.46883 * 181.53857 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1339 0.0000 4 6 3.5439 0.7322 0.0006 5 6 4.7334 1.6056 0.0002 6 8 5.8440 1.1203 0.0983 7 7 4.5888 2.9412 -0.1087 8 6 3.3364 3.4972 -0.1061 9 1 2.5340 3.0235 -0.6522 10 6 3.0987 4.6707 0.5991 11 7 1.9104 5.2301 0.5621 12 14 4.4685 5.4527 1.5998 13 1 5.2048 6.4267 0.7548 14 1 3.8865 6.1548 2.7719 15 1 5.4031 4.3982 2.0686 16 6 5.7129 3.7565 -0.2240 17 6 5.6787 4.8621 -1.0672 18 6 6.8000 5.6668 -1.1675 19 6 7.9253 5.3300 -0.4276 20 6 7.8891 4.2168 0.3897 21 7 6.8040 3.4715 0.4697 22 6 3.5512 -0.6789 -0.0047 23 6 2.2625 -1.0999 0.0006 24 8 1.8434 -2.3913 0.0009 25 6 2.8521 -3.4007 0.0767 26 9 3.7319 -3.2628 -1.0023 27 9 3.5597 -3.2638 1.2757 28 1 -0.3634 -0.0916 -1.0235 29 1 -0.3633 -0.8406 0.5912 30 1 -0.3633 0.9323 0.4325 31 1 1.7444 6.0490 1.0547 32 1 4.7876 5.0919 -1.6326 33 1 6.8010 6.5348 -1.8102 34 1 8.8182 5.9345 -0.4868 35 1 8.7608 3.9533 0.9704 36 1 4.4271 -1.3107 -0.0097 37 1 2.3848 -4.3848 0.0409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585098984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:31 Heat of formation + Delta-G solvation = -35.256460 kcal Electronic energy + Delta-G solvation = -29645.899064 eV Core-core repulsion = 25062.425401 eV Total energy + Delta-G solvation = -4583.473663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.23944 -48.32668 -42.60057 -41.77068 -39.87516 -39.08319 -37.05456 -34.35213 -34.16467 -33.28253 -31.48876 -30.57734 -28.25852 -27.29094 -27.06660 -25.17256 -24.24155 -23.19471 -22.37670 -21.03366 -20.25571 -19.69726 -18.96581 -18.81310 -17.80879 -17.77771 -17.43424 -17.28956 -16.95830 -16.68273 -16.16474 -15.79987 -15.65213 -15.30310 -15.15886 -15.10469 -15.01783 -14.70849 -14.52322 -14.46436 -14.26179 -13.94642 -13.76875 -13.42630 -13.29841 -13.19063 -13.05854 -12.80009 -12.69579 -12.10210 -11.85123 -11.34872 -11.14135 -10.88430 -10.42310 -10.24955 -10.16944 -9.67847 -9.30171 -8.52177 -6.27684 -0.02358 0.40875 0.52895 0.63384 1.00806 1.17221 1.23737 1.40363 1.84999 2.14115 2.29305 2.32598 2.58218 2.78737 3.10684 3.30403 3.46342 3.63675 3.65392 3.91539 4.04688 4.18332 4.25320 4.32968 4.34624 4.42109 4.44722 4.52390 4.68547 4.89979 4.97912 5.10104 5.18384 5.30207 5.40940 5.80296 5.93332 6.02697 6.27102 6.37689 6.78753 7.02172 7.21319 7.58396 8.55939 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.015576 B = 0.004234 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.166625 B = 6610.767282 C = 7833.695459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.362 5.362 3 N -0.210 5.210 4 C 0.043 3.957 5 C 0.557 3.443 6 O -0.556 6.556 7 N -0.409 5.409 8 C -0.333 4.333 9 H 0.123 0.877 10 C 0.053 3.947 11 N -0.884 5.884 12 Si 0.887 3.113 13 H -0.232 1.232 14 H -0.294 1.294 15 H -0.265 1.265 16 C 0.317 3.683 17 C -0.194 4.194 18 C -0.061 4.061 19 C -0.191 4.191 20 C 0.096 3.904 21 N -0.520 5.520 22 C -0.289 4.289 23 C 0.266 3.734 24 O -0.307 6.307 25 C 0.418 3.582 26 F -0.208 7.208 27 F -0.210 7.210 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.280 0.720 32 H 0.135 0.865 33 H 0.173 0.827 34 H 0.180 0.820 35 H 0.180 0.820 36 H 0.155 0.845 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -10.678 -2.791 11.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.155 5.155 3 N -0.040 5.040 4 C -0.122 4.122 5 C 0.346 3.654 6 O -0.433 6.433 7 N -0.124 5.124 8 C -0.461 4.461 9 H 0.140 0.860 10 C -0.153 4.153 11 N -0.520 5.520 12 Si 0.712 3.288 13 H -0.155 1.155 14 H -0.222 1.222 15 H -0.190 1.190 16 C 0.092 3.908 17 C -0.217 4.217 18 C -0.087 4.087 19 C -0.212 4.212 20 C -0.063 4.063 21 N -0.234 5.234 22 C -0.319 4.319 23 C 0.097 3.903 24 O -0.220 6.220 25 C 0.329 3.671 26 F -0.190 7.190 27 F -0.192 7.192 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.152 0.848 33 H 0.190 0.810 34 H 0.198 0.802 35 H 0.197 0.803 36 H 0.172 0.828 37 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -1.105 -10.717 -2.161 10.988 hybrid contribution 0.934 0.553 0.213 1.106 sum -0.171 -10.163 -1.948 10.350 Atomic orbital electron populations 1.22331 0.70871 1.06149 1.05386 1.49598 1.08580 1.00544 1.56740 1.78787 1.00875 1.02603 1.21695 1.21550 0.92257 0.93710 1.04716 1.17722 0.86889 0.82197 0.78640 1.90677 1.25896 1.75157 1.51593 1.41474 1.05122 1.04195 1.61622 1.19470 0.84367 1.09792 1.32428 0.85962 1.25646 0.97340 0.96846 0.95448 1.69647 1.21729 1.19690 1.40968 0.86713 0.81269 0.80642 0.80128 1.15489 1.22150 1.18995 1.18781 0.87098 0.91865 0.93076 1.21842 1.01888 0.97473 1.00453 1.21860 0.91063 0.98377 0.97427 1.22440 1.00706 0.99090 0.98957 1.23177 0.94956 0.91286 0.96861 1.67423 1.00893 1.32831 1.22292 1.21040 0.95951 0.93743 1.21212 1.18547 0.88907 0.81893 1.00977 1.86362 1.36837 1.10056 1.88699 1.24705 0.77813 0.93638 0.70945 1.93110 1.72304 1.96449 1.57140 1.93116 1.81043 1.96498 1.48495 0.88447 0.86507 0.88741 0.90955 0.84751 0.80980 0.80246 0.80270 0.82783 0.72433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.19 11.42 127.77 1.46 3.64 16 2 N -0.36 -13.08 4.04 -480.55 -1.94 -15.02 16 3 N -0.21 -9.89 9.27 -48.47 -0.45 -10.34 16 4 C 0.04 2.15 6.84 42.30 0.29 2.44 16 5 C 0.56 30.63 7.55 86.71 0.65 31.29 16 6 O -0.56 -31.97 15.79 -4.01 -0.06 -32.03 16 7 N -0.41 -22.36 2.51 -467.67 -1.17 -23.53 16 8 C -0.33 -18.62 7.82 84.05 0.66 -17.96 16 9 H 0.12 7.20 5.94 -2.91 -0.02 7.18 16 10 C 0.05 2.95 5.20 84.93 0.44 3.39 16 11 N -0.88 -49.82 13.95 21.66 0.30 -49.51 16 12 Si 0.89 44.27 24.13 68.60 1.66 45.92 16 13 H -0.23 -10.40 5.78 99.48 0.58 -9.83 16 14 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 15 H -0.27 -14.39 5.69 99.48 0.57 -13.82 16 16 C 0.32 15.92 3.47 132.94 0.46 16.38 16 17 C -0.19 -8.33 6.52 22.51 0.15 -8.19 16 18 C -0.06 -2.01 9.44 22.44 0.21 -1.80 16 19 C -0.19 -5.66 10.11 22.39 0.23 -5.43 16 20 C 0.10 3.53 11.18 84.67 0.95 4.47 16 21 N -0.52 -25.31 7.55 -192.99 -1.46 -26.77 16 22 C -0.29 -12.01 8.82 22.36 0.20 -11.81 16 23 C 0.27 9.10 7.47 83.45 0.62 9.72 16 24 O -0.31 -7.24 10.43 -91.01 -0.95 -8.19 16 25 C 0.42 7.29 6.00 113.37 0.68 7.97 16 26 F -0.21 -4.92 15.75 44.97 0.71 -4.21 16 27 F -0.21 -5.02 16.44 44.97 0.74 -4.28 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.28 14.81 8.31 -92.71 -0.77 14.03 16 32 H 0.13 5.94 7.55 -2.91 -0.02 5.92 16 33 H 0.17 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.18 3.40 8.06 -2.91 -0.02 3.37 16 35 H 0.18 5.17 8.06 -2.91 -0.02 5.14 16 36 H 0.15 6.31 6.60 -2.91 -0.02 6.29 16 37 H 0.26 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -83.91 325.41 5.24 -78.67 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.87 Total: 15.19 kcal Atomic # 6 Polarization: 27.12 SS G_CDS: 6.99 Total: 34.12 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -4.72 Total: -125.18 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.01 Total: -40.22 kcal Atomic # 9 Polarization: -9.94 SS G_CDS: 1.45 Total: -8.49 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.66 Total: 45.92 kcal Total: -83.91 5.24 -78.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585098984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.410 kcal (2) G-P(sol) polarization free energy of solvation -83.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds