Wall clock time and date at job start Tue Mar 31 2020 21:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.50698 * 109.46824 * 239.99625 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00204 * 4 2 1 6 6 C 1.37875 * 120.00046 * 60.00863 * 4 2 1 7 7 N 1.31511 * 120.00192 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47309 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47510 * 119.99847 * 8 6 4 11 11 H 1.48506 * 109.47246 * 239.99882 * 8 6 4 12 12 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 13 13 N 1.46496 * 109.46995 * 299.99666 * 12 2 1 14 14 C 1.40760 * 119.99895 * 180.02562 * 13 12 2 15 15 C 1.38329 * 122.54316 * 359.71049 * 14 13 12 16 16 C 1.34775 * 114.67444 * 179.76765 * 15 14 13 17 17 C 1.47904 * 125.22246 * 180.20561 * 16 15 14 18 18 N 1.34212 * 126.69921 * 359.97425 * 17 16 15 19 19 N 1.28990 * 107.24990 * 179.83248 * 18 17 16 20 20 N 1.28720 * 108.99182 * 0.43434 * 19 18 17 21 21 H 0.97003 * 125.31582 * 179.75327 * 20 19 18 22 22 N 1.28871 * 109.37016 * 359.72056 * 20 19 18 23 23 S 1.75862 * 109.56143 * 0.47413 * 16 15 14 24 24 C 1.33972 * 122.54410 * 180.02562 * 14 13 12 25 25 N 1.48233 * 125.11504 * 0.02562 * 24 14 13 26 26 O 1.21796 * 119.99632 * 0.02562 * 25 24 14 27 27 O 1.21803 * 119.99747 * 179.97438 * 25 24 14 28 28 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 29 29 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 30 30 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 34 34 H 0.96996 * 120.00505 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46801 * 59.99811 * 12 2 1 36 36 H 1.09001 * 109.46998 * 179.97438 * 12 2 1 37 37 H 0.96998 * 120.00192 * 359.97438 * 13 12 2 38 38 H 1.08004 * 122.65997 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0078 9 1 3.1482 -2.2860 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1474 -0.1860 -4.8160 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8919 -0.5112 3.7239 15 6 2.6787 -1.6334 3.9119 16 6 2.9096 -1.9490 5.2016 17 6 3.7204 -3.0949 5.6674 18 7 4.3506 -3.9967 4.8987 19 7 4.9443 -4.8251 5.6894 20 7 4.7052 -4.4858 6.9078 21 1 5.0342 -4.9493 7.6939 22 7 3.9611 -3.4337 6.9204 23 16 2.0925 -0.7938 6.2459 24 6 1.4735 0.0798 4.8510 25 7 0.6171 1.2882 4.9129 26 8 0.2393 1.8200 3.8844 27 8 0.2906 1.7486 5.9922 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 0.7090 1.1613 -3.4844 35 1 1.6764 -1.7489 1.2493 36 1 3.1299 -0.7217 1.2492 37 1 0.9943 0.7583 2.3564 38 1 3.0790 -2.2088 3.0902 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589266918.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:26 Heat of formation + Delta-G solvation = 157.788275 kcal Electronic energy + Delta-G solvation = -26476.061940 eV Core-core repulsion = 22487.092462 eV Total energy + Delta-G solvation = -3988.969477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.92496 -41.73842 -39.31654 -36.69405 -36.21161 -34.92110 -34.21839 -32.95395 -31.15028 -30.07974 -26.73233 -25.77414 -25.77171 -25.12740 -24.88929 -23.75971 -22.65876 -20.55905 -19.75424 -19.28057 -18.58857 -18.01568 -17.62830 -17.27527 -16.99984 -16.12868 -15.80706 -14.91866 -14.74061 -14.51465 -14.50273 -14.30333 -13.30678 -13.15408 -12.95914 -12.64907 -12.23081 -11.94428 -11.74380 -11.69636 -11.38608 -11.38224 -11.30106 -11.25944 -10.97330 -10.91853 -10.91690 -10.71171 -10.49471 -10.24842 -9.91537 -9.59827 -9.48970 -9.23763 -8.87356 -8.45680 -7.58986 -6.08370 -4.20497 -0.41060 0.58726 0.62720 1.06505 1.34394 1.73328 1.84991 1.89793 2.50097 3.01986 3.23020 3.32173 3.34413 3.58703 3.84471 4.33752 4.57318 4.63115 4.85523 5.10405 5.18399 5.33840 5.59858 5.85665 5.88245 5.97628 6.29715 6.51814 6.63107 6.80896 6.85524 6.94250 7.03948 7.29014 7.48740 7.62414 7.64141 7.71653 7.94263 7.94369 8.07295 8.29310 8.79599 9.46204 10.92932 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010979 B = 0.003570 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.686456 B = 7840.464540 C =10199.084407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 C -0.135 4.135 4 C -0.511 4.511 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.114 3.886 13 N -0.670 5.670 14 C 0.296 3.704 15 C -0.122 4.122 16 C -0.055 4.055 17 C 0.240 3.760 18 N -0.245 5.245 19 N -0.040 5.040 20 N -0.221 5.221 21 H 0.479 0.521 22 N -0.281 5.281 23 S 0.262 5.738 24 C -0.293 4.293 25 N 0.094 4.906 26 O -0.189 6.189 27 O -0.187 6.187 28 H 0.011 0.989 29 H 0.088 0.912 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.088 0.912 33 H 0.011 0.989 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.424 0.576 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.031 -8.514 19.003 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 C -0.193 4.193 4 C -0.550 4.550 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.519 5.519 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.008 4.008 13 N -0.300 5.300 14 C 0.167 3.833 15 C -0.162 4.162 16 C -0.179 4.179 17 C -0.041 4.041 18 N -0.119 5.119 19 N -0.036 5.036 20 N -0.067 5.067 21 H 0.334 0.666 22 N -0.134 5.134 23 S 0.522 5.478 24 C -0.505 4.505 25 N 0.600 4.400 26 O -0.392 6.392 27 O -0.395 6.395 28 H 0.030 0.970 29 H 0.107 0.893 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.107 0.893 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.269 0.731 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.550 -9.251 20.055 23.037 hybrid contribution -0.007 0.018 -1.864 1.864 sum 6.542 -9.233 18.192 21.424 Atomic orbital electron populations 1.21869 0.97425 0.99280 1.00745 1.18335 0.93097 0.92883 0.89753 1.21869 0.98503 0.98197 1.00741 1.20944 1.32004 1.12292 0.89715 0.92273 1.24880 0.94736 0.94864 0.98923 1.69814 1.36194 1.22545 1.23346 0.86508 0.78658 0.79689 0.82967 1.19746 1.21009 1.21013 1.22234 0.98503 0.96354 0.83714 1.46416 1.50866 1.31485 1.01252 1.16689 0.89867 0.90489 0.86229 1.19912 1.01592 0.97546 0.97179 1.21208 1.02220 0.96975 0.97451 1.22220 1.00029 0.96688 0.85192 1.76286 1.09105 1.01769 1.24761 1.79005 1.16787 1.19518 0.88248 1.47724 1.31481 1.17617 1.09892 0.66602 1.75044 1.12456 1.03502 1.22409 1.84358 1.45957 1.17353 1.00157 1.24821 1.22500 1.03510 0.99682 1.42143 0.98166 0.99409 1.00307 1.94453 1.58904 1.61461 1.24379 1.94506 1.61283 1.66521 1.17146 0.96998 0.89303 0.95391 0.95395 0.89301 0.97008 0.92867 0.91809 0.91810 0.73069 0.80695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.08 37.16 0.30 -2.74 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.14 -3.04 8.08 37.16 0.30 -2.74 16 4 C -0.51 -12.60 8.01 -34.44 -0.28 -12.88 16 5 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.06 9.35 55.43 0.52 -22.54 16 8 Si 0.89 20.00 29.54 -169.99 -5.02 14.98 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.11 2.09 3.95 -4.04 -0.02 2.08 16 13 N -0.67 -11.50 5.13 -59.75 -0.31 -11.81 16 14 C 0.30 4.49 6.58 -85.22 -0.56 3.93 16 15 C -0.12 -1.57 9.34 -40.78 -0.38 -1.95 16 16 C -0.06 -0.65 6.44 -36.85 -0.24 -0.89 16 17 C 0.24 2.64 8.16 -156.24 -1.27 1.36 16 18 N -0.25 -2.85 12.51 32.08 0.40 -2.45 16 19 N -0.04 -0.37 13.46 60.35 0.81 0.44 16 20 N -0.22 -1.36 7.90 60.35 0.48 -0.88 16 21 H 0.48 0.48 8.96 -340.33 -3.05 -2.57 16 22 N -0.28 -2.50 12.41 32.10 0.40 -2.10 16 23 S 0.26 3.09 23.10 -107.50 -2.48 0.61 16 24 C -0.29 -4.48 7.52 -11.01 -0.08 -4.57 16 25 N 0.09 1.66 4.46 33.57 0.15 1.81 16 26 O -0.19 -3.59 16.54 -29.46 -0.49 -4.08 16 27 O -0.19 -3.28 19.08 -29.46 -0.56 -3.85 16 28 H 0.01 0.23 6.86 -51.93 -0.36 -0.12 16 29 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 33 H 0.01 0.23 6.86 -51.93 -0.36 -0.12 16 34 H 0.26 6.60 8.31 -40.82 -0.34 6.27 16 35 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 36 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 37 H 0.42 7.86 3.50 -40.82 -0.14 7.72 16 38 H 0.18 2.12 7.37 -52.48 -0.39 1.74 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -28.88 340.91 -9.52 -38.40 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.15 Total: 1.86 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -2.40 Total: -15.50 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 2.45 Total: -37.54 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -1.05 Total: -7.93 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.48 Total: 0.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.88 -9.52 -38.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589266918.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.183 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds