Wall clock time and date at job start Tue Mar 31 2020 21:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.50698 * 109.46824 * 239.99625 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00204 * 4 2 1 6 6 C 1.37875 * 120.00046 * 60.00863 * 4 2 1 7 7 N 1.31511 * 120.00192 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47309 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47510 * 119.99847 * 8 6 4 11 11 H 1.48506 * 109.47246 * 239.99882 * 8 6 4 12 12 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 13 13 N 1.46496 * 109.46995 * 299.99666 * 12 2 1 14 14 C 1.40760 * 119.99895 * 180.02562 * 13 12 2 15 15 C 1.38329 * 122.54316 * 359.71049 * 14 13 12 16 16 C 1.34775 * 114.67444 * 179.76765 * 15 14 13 17 17 C 1.47904 * 125.22246 * 180.20561 * 16 15 14 18 18 N 1.34212 * 126.69921 * 359.97425 * 17 16 15 19 19 N 1.28990 * 107.24990 * 179.83248 * 18 17 16 20 20 N 1.28720 * 108.99182 * 0.43434 * 19 18 17 21 21 H 0.97003 * 125.31582 * 179.75327 * 20 19 18 22 22 N 1.28871 * 109.37016 * 359.72056 * 20 19 18 23 23 S 1.75862 * 109.56143 * 0.47413 * 16 15 14 24 24 C 1.33972 * 122.54410 * 180.02562 * 14 13 12 25 25 N 1.48233 * 125.11504 * 0.02562 * 24 14 13 26 26 O 1.21796 * 119.99632 * 0.02562 * 25 24 14 27 27 O 1.21803 * 119.99747 * 179.97438 * 25 24 14 28 28 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 29 29 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 30 30 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 34 34 H 0.96996 * 120.00505 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46801 * 59.99811 * 12 2 1 36 36 H 1.09001 * 109.46998 * 179.97438 * 12 2 1 37 37 H 0.96998 * 120.00192 * 359.97438 * 13 12 2 38 38 H 1.08004 * 122.65997 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0078 9 1 3.1482 -2.2860 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1474 -0.1860 -4.8160 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8919 -0.5112 3.7239 15 6 2.6787 -1.6334 3.9119 16 6 2.9096 -1.9490 5.2016 17 6 3.7204 -3.0949 5.6674 18 7 4.3506 -3.9967 4.8987 19 7 4.9443 -4.8251 5.6894 20 7 4.7052 -4.4858 6.9078 21 1 5.0342 -4.9493 7.6939 22 7 3.9611 -3.4337 6.9204 23 16 2.0925 -0.7938 6.2459 24 6 1.4735 0.0798 4.8510 25 7 0.6171 1.2882 4.9129 26 8 0.2393 1.8200 3.8844 27 8 0.2906 1.7486 5.9922 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 0.7090 1.1613 -3.4844 35 1 1.6764 -1.7489 1.2493 36 1 3.1299 -0.7217 1.2492 37 1 0.9943 0.7583 2.3564 38 1 3.0790 -2.2088 3.0902 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589266918.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:25 Heat of formation + Delta-G solvation = 140.570825 kcal Electronic energy + Delta-G solvation = -26476.808544 eV Core-core repulsion = 22487.092462 eV Total energy + Delta-G solvation = -3989.716082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.65170 -43.05018 -40.51737 -38.22195 -37.56411 -35.82607 -35.16407 -34.27527 -32.61908 -31.40969 -27.90958 -27.60322 -27.46096 -26.43115 -25.84786 -24.99686 -23.59530 -21.68498 -20.87641 -20.58944 -19.96833 -19.13891 -18.60328 -18.32651 -18.22324 -17.73832 -17.11482 -16.50567 -16.03809 -15.80085 -15.62122 -15.25718 -14.69093 -14.59394 -14.41052 -13.86237 -13.41037 -13.35390 -13.12260 -12.87251 -12.68037 -12.60147 -12.58403 -12.48543 -12.44325 -12.34085 -12.32143 -12.23518 -12.18869 -12.10030 -11.53381 -11.21375 -10.87541 -10.70577 -10.38372 -10.27588 -8.76079 -7.99917 -6.17082 -1.50765 -0.47402 -0.26167 0.03867 0.27355 0.68686 0.85830 1.20879 1.44977 1.46441 1.49639 1.57919 2.08970 2.40310 2.52500 3.04899 3.24789 3.43932 3.65087 3.97013 4.24045 4.27097 4.36212 4.46928 4.64805 4.68208 4.88338 5.03707 5.08946 5.16149 5.20831 5.41541 5.48659 5.63361 5.68792 5.77850 6.08663 6.17029 6.34094 6.42947 6.55976 6.90013 6.90637 7.51841 8.99656 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010979 B = 0.003570 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.686456 B = 7840.464540 C =10199.084407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.053 3.947 3 C -0.125 4.125 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.948 3.052 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.287 1.287 12 C 0.129 3.871 13 N -0.681 5.681 14 C 0.297 3.703 15 C -0.136 4.136 16 C -0.034 4.034 17 C 0.223 3.777 18 N -0.270 5.270 19 N -0.044 5.044 20 N -0.186 5.186 21 H 0.500 0.500 22 N -0.273 5.273 23 S 0.320 5.680 24 C -0.311 4.311 25 N 0.094 4.906 26 O -0.233 6.233 27 O -0.184 6.184 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.258 0.742 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.417 0.583 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.485 -10.566 21.217 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.052 3.948 3 C -0.183 4.183 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.176 4.176 7 N -0.543 5.543 8 Si 0.775 3.225 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.213 1.213 12 C 0.006 3.994 13 N -0.312 5.312 14 C 0.169 3.831 15 C -0.176 4.176 16 C -0.158 4.158 17 C -0.058 4.058 18 N -0.143 5.143 19 N -0.039 5.039 20 N -0.038 5.038 21 H 0.361 0.639 22 N -0.127 5.127 23 S 0.580 5.420 24 C -0.523 4.523 25 N 0.594 4.406 26 O -0.426 6.426 27 O -0.394 6.394 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.260 0.740 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.003 -11.303 22.251 26.209 hybrid contribution -0.371 0.532 -2.286 2.376 sum 7.632 -10.771 19.966 23.935 Atomic orbital electron populations 1.21716 0.97944 0.98862 0.99780 1.18324 0.92691 0.92752 0.91020 1.21717 0.98285 0.98518 0.99778 1.21292 1.31570 1.12301 0.90726 0.92025 1.25538 0.95158 0.95523 1.01380 1.69958 1.37224 1.23649 1.23475 0.85659 0.77948 0.78812 0.80083 1.18965 1.21307 1.21315 1.21901 0.98771 0.96079 0.82631 1.46231 1.51618 1.31558 1.01801 1.16871 0.89981 0.90982 0.85266 1.19848 1.02361 0.97347 0.98033 1.21313 1.00732 0.96601 0.97152 1.22084 1.00976 0.96940 0.85805 1.76285 1.09842 1.02356 1.25809 1.78971 1.16754 1.19214 0.88918 1.47811 1.29492 1.16356 1.10157 0.63936 1.75010 1.12330 1.03943 1.21419 1.84230 1.44421 1.15709 0.97648 1.25199 1.22432 1.02890 1.01749 1.42394 0.98284 0.99966 0.99952 1.94455 1.60676 1.62863 1.24615 1.94470 1.61123 1.66817 1.17032 0.96024 0.92104 0.95412 0.95413 0.92101 0.96032 0.93234 0.91004 0.91010 0.73973 0.79988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.08 71.98 0.58 -5.13 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.32 16 3 C -0.13 -5.71 8.08 71.98 0.58 -5.13 16 4 C -0.52 -25.62 8.01 25.60 0.21 -25.42 16 5 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 6 C 0.02 1.20 5.15 84.65 0.44 1.64 16 7 N -0.90 -48.44 9.35 21.45 0.20 -48.24 16 8 Si 0.95 41.16 29.54 68.60 2.03 43.18 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 12 C 0.13 4.63 3.95 86.38 0.34 4.97 16 13 N -0.68 -23.16 5.13 -342.96 -1.76 -24.92 16 14 C 0.30 8.68 6.58 36.76 0.24 8.92 16 15 C -0.14 -3.26 9.34 21.50 0.20 -3.06 16 16 C -0.03 -0.72 6.44 24.04 0.15 -0.56 16 17 C 0.22 4.28 8.16 137.10 1.12 5.40 16 18 N -0.27 -5.61 12.51 -52.41 -0.66 -6.27 16 19 N -0.04 -0.68 13.46 37.02 0.50 -0.18 16 20 N -0.19 -1.64 7.90 37.02 0.29 -1.35 16 21 H 0.50 -0.92 8.96 -347.50 -3.12 -4.03 16 22 N -0.27 -3.92 12.41 -52.36 -0.65 -4.57 16 23 S 0.32 6.72 23.10 -56.49 -1.31 5.42 16 24 C -0.31 -9.14 7.52 80.91 0.61 -8.53 16 25 N 0.09 3.29 4.46 -47.69 -0.21 3.08 16 26 O -0.23 -9.04 16.54 18.89 0.31 -8.72 16 27 O -0.18 -6.34 19.08 18.88 0.36 -5.98 16 28 H 0.02 0.90 6.86 -2.39 -0.02 0.89 16 29 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 33 H 0.02 0.90 6.86 -2.39 -0.02 0.88 16 34 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 35 H 0.07 2.44 8.12 -2.39 -0.02 2.42 16 36 H 0.07 2.44 8.13 -2.39 -0.02 2.42 16 37 H 0.42 15.61 3.50 -92.71 -0.32 15.28 16 38 H 0.18 4.10 7.37 -2.91 -0.02 4.08 16 Total: -1.00 -62.29 340.91 1.28 -61.01 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -2.27 Total: 12.12 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 4.44 Total: -24.58 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -2.29 Total: -82.45 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.67 Total: -14.70 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 6.72 SS G_CDS: -1.31 Total: 5.42 kcal Total: -62.29 1.28 -61.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589266918.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.579 kcal (2) G-P(sol) polarization free energy of solvation -62.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds