Wall clock time and date at job start Tue Mar 31 2020 21:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47505 * 2 1 4 4 C 1.50704 * 109.47121 * 239.99720 * 2 1 3 5 5 H 1.07996 * 120.00373 * 240.00281 * 4 2 1 6 6 C 1.37877 * 119.99682 * 60.00337 * 4 2 1 7 7 N 1.31519 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00107 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47010 * 60.00050 * 8 6 4 10 10 H 1.48496 * 109.47549 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47040 * 300.00312 * 8 6 4 12 12 N 1.46506 * 109.47021 * 120.00396 * 2 1 3 13 13 C 1.46498 * 120.00239 * 59.71865 * 12 2 1 14 14 S 1.65597 * 119.99791 * 240.00090 * 12 2 1 15 15 O 1.42101 * 106.40154 * 203.53789 * 14 12 2 16 16 O 1.42106 * 106.40098 * 336.45446 * 14 12 2 17 17 C 1.76193 * 107.22140 * 89.99909 * 14 12 2 18 18 C 1.38315 * 119.48813 * 269.72573 * 17 14 12 19 19 C 1.38424 * 119.27798 * 179.77019 * 18 17 14 20 20 C 1.39730 * 118.31798 * 0.49534 * 19 18 17 21 21 C 1.48458 * 120.53528 * 179.72854 * 20 19 18 22 22 N 1.34044 * 126.67628 * 359.70657 * 21 20 19 23 23 N 1.28983 * 107.27360 * 179.89315 * 22 21 20 24 24 N 1.28737 * 108.93861 * 0.37563 * 23 22 21 25 25 H 0.96998 * 125.33915 * 179.74036 * 24 23 22 26 26 N 1.28869 * 109.31783 * 359.75701 * 24 23 22 27 27 C 1.39263 * 118.92919 * 359.74453 * 20 19 18 28 28 N 1.31750 * 120.60738 * 0.02562 * 27 20 19 29 29 H 1.08995 * 109.47505 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47000 * 300.00487 * 1 2 3 31 31 H 1.09002 * 109.46917 * 59.99707 * 1 2 3 32 32 H 0.97000 * 119.99941 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.46661 * 89.99886 * 13 12 2 34 34 H 1.08993 * 109.47575 * 210.00600 * 13 12 2 35 35 H 1.09001 * 109.46870 * 330.00556 * 13 12 2 36 36 H 1.08001 * 120.35989 * 0.02562 * 18 17 14 37 37 H 1.08003 * 120.84137 * 180.24495 * 19 18 17 38 38 H 1.07999 * 119.69226 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 1.8279 -2.5198 -4.0082 10 1 1.8279 -0.4192 -5.2204 11 1 3.8074 -1.1190 -4.0077 12 7 2.0183 -0.6907 1.1962 13 6 1.6593 -2.0915 1.4311 14 16 2.9703 0.1140 2.2863 15 8 3.7117 -0.8791 2.9815 16 8 3.5794 1.1828 1.5748 17 6 1.8961 0.8533 3.4711 18 6 1.4217 2.1343 3.2542 19 6 0.5742 2.7091 4.1856 20 6 0.2381 1.9686 5.3218 21 6 -0.6621 2.5395 6.3551 22 7 -1.2276 3.7548 6.3414 23 7 -1.9353 3.8601 7.4146 24 7 -1.8280 2.7720 8.0942 25 1 -2.2601 2.5969 8.9448 26 7 -1.0564 1.9521 7.4673 27 6 0.7615 0.6866 5.4696 28 7 1.5612 0.1789 4.5539 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7096 1.1619 -3.4844 33 1 2.4070 -2.7396 0.9740 34 1 1.6203 -2.2817 2.5036 35 1 0.6835 -2.2953 0.9902 36 1 1.7062 2.6786 2.3658 37 1 0.1858 3.7063 4.0397 38 1 0.5095 0.1033 6.3428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589787237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:54 Heat of formation + Delta-G solvation = 100.111937 kcal Electronic energy + Delta-G solvation = -26825.320059 eV Core-core repulsion = 22833.849548 eV Total energy + Delta-G solvation = -3991.470511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.89458 -40.29658 -36.76704 -36.22798 -35.31723 -35.01499 -34.22575 -32.61228 -32.56436 -31.20584 -29.12627 -25.67645 -25.62284 -25.31704 -25.12053 -23.58630 -22.55428 -20.78768 -19.68876 -18.95374 -17.68020 -17.57342 -16.99511 -16.79845 -16.65682 -16.21161 -15.21312 -14.92311 -14.52402 -14.36183 -14.32548 -13.69600 -13.47860 -13.23861 -12.94008 -12.83971 -12.68073 -12.03327 -11.90875 -11.77100 -11.64220 -11.60026 -11.54217 -11.37400 -11.25030 -11.13691 -10.98480 -10.80550 -10.50325 -10.31549 -10.04071 -10.03738 -9.76800 -9.42454 -9.29718 -8.47229 -8.03425 -6.09256 -4.15864 -0.06750 0.70934 0.84590 0.99442 1.79735 1.83069 3.16337 3.25263 3.31071 3.35392 3.38996 3.65228 3.71123 4.07078 4.21838 4.39961 4.50687 4.74281 4.78931 4.88161 5.04504 5.21307 5.23263 5.42832 5.61541 5.65107 5.74667 5.93369 6.18556 6.19906 6.37165 6.60554 6.71607 6.76301 6.95257 7.36498 7.44858 7.58629 7.69747 7.74705 8.00155 8.23214 8.86179 9.50013 10.96521 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.003088 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.547035 B = 9065.686825 C = 9730.829339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.264 3.736 3 H 0.062 0.938 4 C -0.519 4.519 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.971 5.971 13 C 0.105 3.895 14 S 2.685 3.315 15 O -0.948 6.948 16 O -0.941 6.941 17 C -0.424 4.424 18 C -0.080 4.080 19 C -0.047 4.047 20 C -0.031 4.031 21 C 0.219 3.781 22 N -0.261 5.261 23 N -0.045 5.045 24 N -0.224 5.224 25 H 0.477 0.523 26 N -0.284 5.284 27 C 0.117 3.883 28 N -0.389 5.389 29 H 0.036 0.964 30 H 0.009 0.991 31 H 0.095 0.905 32 H 0.264 0.736 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 2.801 18.943 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.162 3.838 3 H 0.080 0.920 4 C -0.559 4.559 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.813 5.813 13 C -0.041 4.041 14 S 2.768 3.232 15 O -0.938 6.938 16 O -0.930 6.930 17 C -0.640 4.640 18 C -0.101 4.101 19 C -0.076 4.076 20 C -0.036 4.036 21 C -0.062 4.062 22 N -0.134 5.134 23 N -0.040 5.040 24 N -0.070 5.070 25 H 0.332 0.668 26 N -0.136 5.136 27 C -0.046 4.046 28 N -0.098 5.098 29 H 0.055 0.945 30 H 0.028 0.972 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.184 0.816 37 H 0.175 0.825 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.705 2.636 19.208 20.210 hybrid contribution -0.995 0.262 -0.142 1.038 sum -6.699 2.898 19.066 20.416 Atomic orbital electron populations 1.22161 0.98238 1.00014 1.00667 1.18869 0.91375 0.93237 0.80355 0.92005 1.21264 1.31791 1.13131 0.89727 0.91716 1.24898 0.94905 0.95002 0.98985 1.69840 1.36444 1.22638 1.23992 0.86532 0.79406 0.79569 0.81770 1.20215 1.21246 1.20067 1.57455 1.70347 1.19792 1.33716 1.21268 1.01833 0.81266 0.99683 1.02744 0.74134 0.73786 0.72540 1.93536 1.67537 1.58238 1.74505 1.93621 1.72354 1.56504 1.70533 1.34661 1.15581 1.03122 1.10594 1.22098 0.93558 0.94413 1.00009 1.21761 0.94224 1.00465 0.91106 1.18477 0.96751 0.95898 0.92510 1.23424 0.99970 0.89475 0.93323 1.76123 1.08462 1.16539 1.12256 1.78956 1.16297 1.08553 1.00199 1.47757 1.30876 1.07922 1.20471 0.66778 1.74932 1.10199 1.20609 1.07874 1.23163 0.92014 0.91409 0.98056 1.67937 1.08413 1.33891 0.99543 0.94505 0.97229 0.88607 0.92576 0.92669 0.92384 0.90853 0.81607 0.82468 0.80998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.94 37.16 0.33 -2.99 16 2 C 0.26 6.19 2.62 -69.08 -0.18 6.01 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.52 -13.52 8.37 -34.44 -0.29 -13.81 16 5 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.99 11.32 55.43 0.63 -23.36 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.97 -19.78 3.06 -115.85 -0.35 -20.14 16 13 C 0.11 1.87 9.55 59.85 0.57 2.44 16 14 S 2.68 52.54 5.70 -107.50 -0.61 51.93 16 15 O -0.95 -19.82 16.92 -57.17 -0.97 -20.79 16 16 O -0.94 -20.45 15.80 -57.17 -0.90 -21.35 16 17 C -0.42 -7.06 6.86 -17.50 -0.12 -7.18 16 18 C -0.08 -1.17 9.54 -39.48 -0.38 -1.54 16 19 C -0.05 -0.58 9.84 -38.96 -0.38 -0.97 16 20 C -0.03 -0.38 5.89 -104.75 -0.62 -1.00 16 21 C 0.22 2.45 7.95 -156.31 -1.24 1.21 16 22 N -0.26 -3.01 12.31 32.15 0.40 -2.61 16 23 N -0.04 -0.42 13.47 60.35 0.81 0.39 16 24 N -0.22 -1.45 7.90 60.35 0.48 -0.97 16 25 H 0.48 0.66 8.96 -340.37 -3.05 -2.39 16 26 N -0.28 -2.61 12.11 32.17 0.39 -2.22 16 27 C 0.12 1.51 10.87 -17.21 -0.19 1.32 16 28 N -0.39 -6.16 10.09 -12.19 -0.12 -6.28 16 29 H 0.04 0.77 6.65 -51.93 -0.35 0.42 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.10 2.32 6.07 -51.93 -0.32 2.01 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.90 7.79 -51.93 -0.40 0.50 16 35 H 0.07 1.24 6.41 -51.93 -0.33 0.91 16 36 H 0.17 2.28 7.59 -52.49 -0.40 1.88 16 37 H 0.16 1.59 7.97 -52.48 -0.42 1.18 16 38 H 0.17 1.74 7.90 -52.49 -0.41 1.32 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -33.23 343.79 -9.11 -42.34 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -6.42 Total: -2.85 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.59 Total: -14.89 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 2.22 Total: -55.19 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -1.87 Total: -42.14 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 52.54 SS G_CDS: -0.61 Total: 51.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.23 -9.11 -42.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.455 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds