Wall clock time and date at job start Tue Mar 31 2020 21:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47505 * 2 1 4 4 C 1.50704 * 109.47121 * 239.99720 * 2 1 3 5 5 H 1.07996 * 120.00373 * 240.00281 * 4 2 1 6 6 C 1.37877 * 119.99682 * 60.00337 * 4 2 1 7 7 N 1.31519 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00107 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47010 * 60.00050 * 8 6 4 10 10 H 1.48496 * 109.47549 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47040 * 300.00312 * 8 6 4 12 12 N 1.46506 * 109.47021 * 120.00396 * 2 1 3 13 13 C 1.46498 * 120.00239 * 59.71865 * 12 2 1 14 14 S 1.65597 * 119.99791 * 240.00090 * 12 2 1 15 15 O 1.42101 * 106.40154 * 203.53789 * 14 12 2 16 16 O 1.42106 * 106.40098 * 336.45446 * 14 12 2 17 17 C 1.76193 * 107.22140 * 89.99909 * 14 12 2 18 18 C 1.38315 * 119.48813 * 269.72573 * 17 14 12 19 19 C 1.38424 * 119.27798 * 179.77019 * 18 17 14 20 20 C 1.39730 * 118.31798 * 0.49534 * 19 18 17 21 21 C 1.48458 * 120.53528 * 179.72854 * 20 19 18 22 22 N 1.34044 * 126.67628 * 359.70657 * 21 20 19 23 23 N 1.28983 * 107.27360 * 179.89315 * 22 21 20 24 24 N 1.28737 * 108.93861 * 0.37563 * 23 22 21 25 25 H 0.96998 * 125.33915 * 179.74036 * 24 23 22 26 26 N 1.28869 * 109.31783 * 359.75701 * 24 23 22 27 27 C 1.39263 * 118.92919 * 359.74453 * 20 19 18 28 28 N 1.31750 * 120.60738 * 0.02562 * 27 20 19 29 29 H 1.08995 * 109.47505 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47000 * 300.00487 * 1 2 3 31 31 H 1.09002 * 109.46917 * 59.99707 * 1 2 3 32 32 H 0.97000 * 119.99941 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.46661 * 89.99886 * 13 12 2 34 34 H 1.08993 * 109.47575 * 210.00600 * 13 12 2 35 35 H 1.09001 * 109.46870 * 330.00556 * 13 12 2 36 36 H 1.08001 * 120.35989 * 0.02562 * 18 17 14 37 37 H 1.08003 * 120.84137 * 180.24495 * 19 18 17 38 38 H 1.07999 * 119.69226 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 1.8279 -2.5198 -4.0082 10 1 1.8279 -0.4192 -5.2204 11 1 3.8074 -1.1190 -4.0077 12 7 2.0183 -0.6907 1.1962 13 6 1.6593 -2.0915 1.4311 14 16 2.9703 0.1140 2.2863 15 8 3.7117 -0.8791 2.9815 16 8 3.5794 1.1828 1.5748 17 6 1.8961 0.8533 3.4711 18 6 1.4217 2.1343 3.2542 19 6 0.5742 2.7091 4.1856 20 6 0.2381 1.9686 5.3218 21 6 -0.6621 2.5395 6.3551 22 7 -1.2276 3.7548 6.3414 23 7 -1.9353 3.8601 7.4146 24 7 -1.8280 2.7720 8.0942 25 1 -2.2601 2.5969 8.9448 26 7 -1.0564 1.9521 7.4673 27 6 0.7615 0.6866 5.4696 28 7 1.5612 0.1789 4.5539 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7096 1.1619 -3.4844 33 1 2.4070 -2.7396 0.9740 34 1 1.6203 -2.2817 2.5036 35 1 0.6835 -2.2953 0.9902 36 1 1.7062 2.6786 2.3658 37 1 0.1858 3.7063 4.0397 38 1 0.5095 0.1033 6.3428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589787237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:53 Heat of formation + Delta-G solvation = 74.331851 kcal Electronic energy + Delta-G solvation = -26826.437968 eV Core-core repulsion = 22833.849548 eV Total energy + Delta-G solvation = -3992.588420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.63158 -41.38374 -38.38796 -37.91740 -36.93638 -35.83221 -35.04304 -34.50991 -33.61546 -32.18537 -30.90167 -27.28070 -27.03013 -26.60202 -26.12783 -24.55885 -23.49437 -22.53733 -20.45597 -20.27759 -19.15825 -18.57566 -18.29487 -18.17906 -17.93510 -17.57526 -16.93445 -16.24622 -16.01289 -15.49393 -15.25168 -15.17443 -14.83743 -14.62188 -14.51622 -14.05145 -13.70902 -13.46644 -13.40135 -13.19271 -13.14000 -12.96386 -12.76225 -12.73461 -12.58375 -12.54427 -12.43355 -12.30885 -12.20342 -12.12719 -11.85979 -11.14366 -11.08997 -10.92490 -10.46718 -10.43106 -9.68820 -8.08020 -6.20752 -1.13612 -0.65475 -0.05812 0.00796 0.91889 1.26652 1.47890 1.49725 1.56364 1.94469 2.32322 2.38706 2.48029 2.72134 2.87776 2.93575 3.20927 3.53909 3.61674 3.79570 3.89758 3.95978 4.10497 4.24937 4.42517 4.61869 4.72548 4.76171 4.86357 4.99006 5.04691 5.13036 5.17371 5.18950 5.50853 5.64019 5.72827 5.88061 6.13240 6.32026 6.33327 6.85639 6.95131 7.47772 8.96162 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.003088 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.547035 B = 9065.686825 C = 9730.829339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.268 3.732 3 H 0.038 0.962 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.980 5.980 13 C 0.100 3.900 14 S 2.697 3.303 15 O -0.969 6.969 16 O -0.973 6.973 17 C -0.439 4.439 18 C -0.084 4.084 19 C -0.041 4.041 20 C -0.016 4.016 21 C 0.204 3.796 22 N -0.282 5.282 23 N -0.048 5.048 24 N -0.191 5.191 25 H 0.498 0.502 26 N -0.276 5.276 27 C 0.120 3.880 28 N -0.409 5.409 29 H 0.043 0.957 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.265 0.735 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.167 0.833 37 H 0.181 0.819 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.956 2.724 20.936 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.165 3.835 3 H 0.056 0.944 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.821 5.821 13 C -0.045 4.045 14 S 2.785 3.215 15 O -0.959 6.959 16 O -0.963 6.963 17 C -0.658 4.658 18 C -0.106 4.106 19 C -0.070 4.070 20 C -0.022 4.022 21 C -0.077 4.077 22 N -0.154 5.154 23 N -0.043 5.043 24 N -0.043 5.043 25 H 0.358 0.642 26 N -0.129 5.129 27 C -0.045 4.045 28 N -0.118 5.118 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.184 0.816 37 H 0.198 0.802 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.184 2.524 21.179 22.506 hybrid contribution -0.638 0.348 -0.488 0.875 sum -7.821 2.872 20.691 22.305 Atomic orbital electron populations 1.21966 0.97016 1.00370 1.00526 1.18576 0.92180 0.91993 0.80775 0.94422 1.21591 1.31815 1.13191 0.91160 0.92264 1.25580 0.95181 0.95694 1.01451 1.69948 1.37157 1.23536 1.24456 0.85684 0.78546 0.78990 0.78859 1.19310 1.20798 1.20387 1.57314 1.70326 1.20900 1.33558 1.21434 1.02026 0.79896 1.01148 1.01906 0.74035 0.73052 0.72457 1.93498 1.68656 1.59035 1.74683 1.93572 1.73735 1.57263 1.71746 1.33730 1.17096 1.04047 1.10964 1.22180 0.93885 0.93799 1.00697 1.21984 0.93218 1.01308 0.90474 1.18558 0.95772 0.95446 0.92377 1.23196 1.00805 0.89845 0.93861 1.76114 1.09144 1.16876 1.13274 1.78922 1.16184 1.09181 1.00039 1.47839 1.29221 1.06664 1.20592 0.64172 1.74897 1.10037 1.20690 1.07252 1.23571 0.90966 0.91921 0.98005 1.67866 1.09556 1.34507 0.99834 0.93816 0.95030 0.90957 0.92577 0.92981 0.90277 0.90157 0.81564 0.80188 0.78224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.11 8.94 71.98 0.64 -5.46 16 2 C 0.27 12.82 2.62 44.24 0.12 12.93 16 3 H 0.04 1.98 6.91 -2.39 -0.02 1.96 16 4 C -0.54 -28.44 8.37 25.60 0.21 -28.22 16 5 H 0.06 3.11 7.65 -2.91 -0.02 3.09 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -49.78 11.32 21.45 0.24 -49.53 16 8 Si 0.95 42.48 29.54 68.60 2.03 44.51 16 9 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 N -0.98 -40.38 3.06 -520.45 -1.59 -41.97 16 13 C 0.10 3.52 9.55 127.77 1.22 4.74 16 14 S 2.70 107.66 5.70 -56.49 -0.32 107.33 16 15 O -0.97 -41.05 16.92 -128.00 -2.17 -43.22 16 16 O -0.97 -43.97 15.80 -128.00 -2.02 -45.99 16 17 C -0.44 -14.50 6.86 84.70 0.58 -13.92 16 18 C -0.08 -2.41 9.54 22.33 0.21 -2.20 16 19 C -0.04 -0.95 9.84 22.67 0.22 -0.73 16 20 C -0.02 -0.36 5.89 -19.95 -0.12 -0.47 16 21 C 0.20 3.99 7.95 137.38 1.09 5.08 16 22 N -0.28 -5.78 12.31 -52.19 -0.64 -6.42 16 23 N -0.05 -0.76 13.47 37.02 0.50 -0.27 16 24 N -0.19 -1.82 7.90 37.02 0.29 -1.53 16 25 H 0.50 -0.46 8.96 -347.54 -3.12 -3.58 16 26 N -0.28 -4.13 12.11 -52.13 -0.63 -4.76 16 27 C 0.12 2.80 10.87 84.95 0.92 3.72 16 28 N -0.41 -12.42 10.09 -192.46 -1.94 -14.37 16 29 H 0.04 1.80 6.65 -2.39 -0.02 1.79 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 3.54 6.07 -2.39 -0.01 3.52 16 32 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 2.41 7.79 -2.39 -0.02 2.39 16 35 H 0.08 2.67 6.41 -2.39 -0.02 2.66 16 36 H 0.17 4.65 7.59 -2.91 -0.02 4.63 16 37 H 0.18 3.27 7.97 -2.91 -0.02 3.24 16 38 H 0.20 3.39 7.90 -2.91 -0.02 3.37 16 Total: -1.00 -71.53 343.79 -2.68 -74.20 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -1.98 Total: 4.96 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 5.56 Total: -22.96 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -3.78 Total: -118.84 kcal Atomic # 8 Polarization: -85.02 SS G_CDS: -4.19 Total: -89.21 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 107.66 SS G_CDS: -0.32 Total: 107.33 kcal Total: -71.53 -2.68 -74.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.536 kcal (2) G-P(sol) polarization free energy of solvation -71.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds