Wall clock time and date at job start Tue Mar 31 2020 21:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47014 * 2 1 4 4 C 1.50694 * 109.47696 * 120.00010 * 2 1 3 5 5 H 1.08009 * 120.00332 * 119.99835 * 4 2 1 6 6 C 1.37874 * 120.00209 * 300.00248 * 4 2 1 7 7 N 1.31516 * 119.99858 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00379 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46637 * 60.00181 * 8 6 4 10 10 H 1.48499 * 109.47289 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47391 * 300.00514 * 8 6 4 12 12 N 1.46504 * 109.47127 * 240.00278 * 2 1 3 13 13 C 1.46489 * 120.00051 * 299.99795 * 12 2 1 14 14 S 1.65606 * 119.99819 * 119.99548 * 12 2 1 15 15 O 1.42105 * 106.40008 * 156.45998 * 14 12 2 16 16 O 1.42098 * 106.40370 * 23.54183 * 14 12 2 17 17 C 1.76193 * 107.21910 * 270.00154 * 14 12 2 18 18 C 1.38309 * 119.49334 * 150.00485 * 17 14 12 19 19 C 1.38418 * 119.28117 * 180.02562 * 18 17 14 20 20 C 1.39730 * 118.31559 * 359.97438 * 19 18 17 21 21 C 1.48470 * 120.52830 * 179.97438 * 20 19 18 22 22 N 1.34040 * 126.67942 * 359.69240 * 21 20 19 23 23 N 1.28979 * 107.27052 * 179.83476 * 22 21 20 24 24 N 1.28733 * 108.94209 * 0.42884 * 23 22 21 25 25 H 0.97006 * 125.33862 * 179.70095 * 24 23 22 26 26 N 1.28870 * 109.31700 * 359.73018 * 24 23 22 27 27 C 1.39262 * 118.93644 * 0.02562 * 20 19 18 28 28 N 1.31747 * 120.59791 * 359.72775 * 27 20 19 29 29 H 1.08997 * 109.47853 * 59.99970 * 1 2 3 30 30 H 1.09001 * 109.47014 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47209 * 299.99422 * 1 2 3 32 32 H 0.97005 * 120.00258 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47302 * 269.99851 * 13 12 2 34 34 H 1.09005 * 109.47350 * 29.99843 * 13 12 2 35 35 H 1.08996 * 109.47412 * 149.99906 * 13 12 2 36 36 H 1.08000 * 120.35305 * 0.02562 * 18 17 14 37 37 H 1.08002 * 120.84200 * 179.97438 * 19 18 17 38 38 H 1.07993 * 119.69878 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3216 -1.1203 4.0079 9 1 3.8066 -1.1207 4.0079 10 1 1.8262 -0.4207 5.2204 11 1 1.8263 -2.5203 4.0077 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0930 -1.4281 14 16 2.9703 0.1144 -2.2863 15 8 3.7118 -0.8787 -2.9816 16 8 3.5793 1.1831 -1.5749 17 6 1.8959 0.8537 -3.4710 18 6 2.2733 2.0308 -4.0914 19 6 1.4257 2.6081 -5.0210 20 6 0.2128 1.9716 -5.2972 21 6 -0.7335 2.5482 -6.2854 22 7 -0.5673 3.6767 -6.9892 23 7 -1.6109 3.8212 -7.7332 24 7 -2.4175 2.8417 -7.5165 25 1 -3.2777 2.7173 -7.9473 26 7 -1.9033 2.0526 -6.6369 27 6 -0.0945 0.7885 -4.6301 28 7 0.7463 0.2735 -3.7562 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 0.7090 1.1613 3.4845 33 1 2.4157 -2.7376 -0.9719 34 1 0.6904 -2.3002 -0.9847 35 1 1.6238 -2.2851 -2.5002 36 1 3.2191 2.4945 -3.8530 37 1 1.6949 3.5272 -5.5202 38 1 -1.0287 0.2865 -4.8338 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589787240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:58 Heat of formation + Delta-G solvation = 100.094688 kcal Electronic energy + Delta-G solvation = -26836.151931 eV Core-core repulsion = 22844.680672 eV Total energy + Delta-G solvation = -3991.471259 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.89412 -40.30817 -36.74479 -36.16348 -35.39744 -35.01758 -34.22665 -32.69132 -32.47686 -31.21880 -29.04541 -25.72026 -25.51963 -25.29902 -25.07839 -23.62923 -22.57321 -20.71123 -19.69546 -18.95504 -17.68295 -17.57166 -17.06047 -16.80912 -16.53375 -16.04403 -15.42262 -14.93440 -14.60800 -14.39124 -14.18483 -13.74549 -13.47186 -13.15646 -13.00286 -12.77373 -12.71034 -12.01594 -11.90601 -11.76709 -11.66820 -11.60362 -11.56448 -11.32951 -11.18878 -11.16629 -10.93265 -10.75714 -10.45260 -10.23832 -10.07545 -10.00367 -9.77014 -9.41149 -9.21922 -8.42573 -7.94235 -6.04396 -4.11084 -0.04007 0.71768 0.84728 0.96395 1.80287 1.83641 3.15158 3.28724 3.33340 3.37458 3.40114 3.44863 3.70978 4.04505 4.32842 4.43049 4.50478 4.74344 4.77738 4.85485 5.03628 5.15731 5.27148 5.34612 5.56334 5.67349 5.74649 5.93626 6.16276 6.29354 6.44085 6.70219 6.84180 6.87803 7.06760 7.42401 7.47020 7.66662 7.69685 7.81810 8.06835 8.29659 8.90926 9.54384 11.01259 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019181 B = 0.003099 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.436325 B = 9032.610929 C = 9627.765668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.267 3.733 3 H 0.060 0.940 4 C -0.518 4.518 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.961 5.961 13 C 0.112 3.888 14 S 2.686 3.314 15 O -0.960 6.960 16 O -0.940 6.940 17 C -0.413 4.413 18 C -0.091 4.091 19 C -0.045 4.045 20 C -0.034 4.034 21 C 0.219 3.781 22 N -0.263 5.263 23 N -0.045 5.045 24 N -0.223 5.223 25 H 0.478 0.522 26 N -0.283 5.283 27 C 0.124 3.876 28 N -0.389 5.389 29 H 0.011 0.989 30 H 0.036 0.964 31 H 0.091 0.909 32 H 0.263 0.737 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 2.652 -18.848 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.077 0.923 4 C -0.558 4.558 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.802 5.802 13 C -0.034 4.034 14 S 2.769 3.231 15 O -0.950 6.950 16 O -0.930 6.930 17 C -0.630 4.630 18 C -0.112 4.112 19 C -0.073 4.073 20 C -0.039 4.039 21 C -0.062 4.062 22 N -0.136 5.136 23 N -0.041 5.041 24 N -0.070 5.070 25 H 0.333 0.667 26 N -0.135 5.135 27 C -0.039 4.039 28 N -0.098 5.098 29 H 0.030 0.970 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.366 2.526 -18.766 19.977 hybrid contribution -0.835 0.304 0.015 0.889 sum -7.201 2.830 -18.750 20.284 Atomic orbital electron populations 1.22097 0.98108 0.99934 1.00528 1.18827 0.91549 0.93067 0.80131 0.92267 1.21282 1.31700 1.13054 0.89794 0.91758 1.24900 0.94966 0.95005 0.98959 1.69858 1.36497 1.22698 1.23872 0.86542 0.79353 0.79575 0.81838 1.20113 1.21301 1.20218 1.57166 1.69982 1.19645 1.33430 1.21211 1.01715 0.80961 0.99559 1.02701 0.73948 0.73700 0.72767 1.93565 1.68077 1.58291 1.75022 1.93628 1.72867 1.56348 1.70136 1.34700 1.07761 1.04581 1.15916 1.21879 1.01085 0.94057 0.94148 1.21691 0.91392 0.99250 0.94997 1.18444 0.93047 0.96894 0.95550 1.23413 0.91768 0.91726 0.99256 1.76100 1.15429 1.15593 1.06458 1.78939 0.96866 1.10598 1.17656 1.47758 1.19288 1.13539 1.26394 0.66749 1.74948 1.10748 1.19862 1.07908 1.23170 0.98871 0.91271 0.90570 1.67960 1.00626 1.30077 1.11126 0.96988 0.94531 0.89006 0.92658 0.93124 0.90755 0.92537 0.82366 0.82545 0.80922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.95 37.15 0.33 -3.02 16 2 C 0.27 6.47 2.62 -69.09 -0.18 6.29 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.52 -13.75 8.37 -34.44 -0.29 -14.03 16 5 H 0.06 1.68 7.65 -52.48 -0.40 1.28 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.59 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 12 N -0.96 -19.99 3.00 -115.87 -0.35 -20.33 16 13 C 0.11 2.00 9.53 59.84 0.57 2.57 16 14 S 2.69 52.50 5.60 -107.50 -0.60 51.90 16 15 O -0.96 -19.58 17.09 -57.17 -0.98 -20.56 16 16 O -0.94 -20.63 16.20 -57.17 -0.93 -21.56 16 17 C -0.41 -6.84 6.77 -17.50 -0.12 -6.96 16 18 C -0.09 -1.25 9.56 -39.49 -0.38 -1.63 16 19 C -0.04 -0.53 9.84 -38.96 -0.38 -0.91 16 20 C -0.03 -0.41 5.89 -104.74 -0.62 -1.03 16 21 C 0.22 2.45 7.95 -156.31 -1.24 1.21 16 22 N -0.26 -2.98 12.31 32.16 0.40 -2.58 16 23 N -0.05 -0.42 13.47 60.35 0.81 0.39 16 24 N -0.22 -1.47 7.90 60.35 0.48 -0.99 16 25 H 0.48 0.74 8.96 -340.36 -3.05 -2.32 16 26 N -0.28 -2.64 12.11 32.17 0.39 -2.25 16 27 C 0.12 1.62 10.87 -17.21 -0.19 1.43 16 28 N -0.39 -6.13 10.22 -12.19 -0.12 -6.26 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.78 6.66 -51.93 -0.35 0.44 16 31 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.29 6.43 -51.93 -0.33 0.95 16 35 H 0.06 0.89 7.79 -51.93 -0.40 0.48 16 36 H 0.16 1.83 7.93 -52.49 -0.42 1.41 16 37 H 0.16 1.44 7.97 -52.49 -0.42 1.03 16 38 H 0.17 1.81 7.90 -52.49 -0.41 1.40 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -33.83 344.58 -9.13 -42.97 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -6.44 Total: -3.38 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.59 Total: -14.46 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 2.23 Total: -55.99 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -1.90 Total: -42.12 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 52.50 SS G_CDS: -0.60 Total: 51.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.83 -9.13 -42.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.060 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds