Wall clock time and date at job start Tue Mar 31 2020 21:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47014 * 2 1 4 4 C 1.50694 * 109.47696 * 120.00010 * 2 1 3 5 5 H 1.08009 * 120.00332 * 119.99835 * 4 2 1 6 6 C 1.37874 * 120.00209 * 300.00248 * 4 2 1 7 7 N 1.31516 * 119.99858 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00379 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46637 * 60.00181 * 8 6 4 10 10 H 1.48499 * 109.47289 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47391 * 300.00514 * 8 6 4 12 12 N 1.46504 * 109.47127 * 240.00278 * 2 1 3 13 13 C 1.46489 * 120.00051 * 299.99795 * 12 2 1 14 14 S 1.65606 * 119.99819 * 119.99548 * 12 2 1 15 15 O 1.42105 * 106.40008 * 156.45998 * 14 12 2 16 16 O 1.42098 * 106.40370 * 23.54183 * 14 12 2 17 17 C 1.76193 * 107.21910 * 270.00154 * 14 12 2 18 18 C 1.38309 * 119.49334 * 150.00485 * 17 14 12 19 19 C 1.38418 * 119.28117 * 180.02562 * 18 17 14 20 20 C 1.39730 * 118.31559 * 359.97438 * 19 18 17 21 21 C 1.48470 * 120.52830 * 179.97438 * 20 19 18 22 22 N 1.34040 * 126.67942 * 359.69240 * 21 20 19 23 23 N 1.28979 * 107.27052 * 179.83476 * 22 21 20 24 24 N 1.28733 * 108.94209 * 0.42884 * 23 22 21 25 25 H 0.97006 * 125.33862 * 179.70095 * 24 23 22 26 26 N 1.28870 * 109.31700 * 359.73018 * 24 23 22 27 27 C 1.39262 * 118.93644 * 0.02562 * 20 19 18 28 28 N 1.31747 * 120.59791 * 359.72775 * 27 20 19 29 29 H 1.08997 * 109.47853 * 59.99970 * 1 2 3 30 30 H 1.09001 * 109.47014 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47209 * 299.99422 * 1 2 3 32 32 H 0.97005 * 120.00258 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47302 * 269.99851 * 13 12 2 34 34 H 1.09005 * 109.47350 * 29.99843 * 13 12 2 35 35 H 1.08996 * 109.47412 * 149.99906 * 13 12 2 36 36 H 1.08000 * 120.35305 * 0.02562 * 18 17 14 37 37 H 1.08002 * 120.84200 * 179.97438 * 19 18 17 38 38 H 1.07993 * 119.69878 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3216 -1.1203 4.0079 9 1 3.8066 -1.1207 4.0079 10 1 1.8262 -0.4207 5.2204 11 1 1.8263 -2.5203 4.0077 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0930 -1.4281 14 16 2.9703 0.1144 -2.2863 15 8 3.7118 -0.8787 -2.9816 16 8 3.5793 1.1831 -1.5749 17 6 1.8959 0.8537 -3.4710 18 6 2.2733 2.0308 -4.0914 19 6 1.4257 2.6081 -5.0210 20 6 0.2128 1.9716 -5.2972 21 6 -0.7335 2.5482 -6.2854 22 7 -0.5673 3.6767 -6.9892 23 7 -1.6109 3.8212 -7.7332 24 7 -2.4175 2.8417 -7.5165 25 1 -3.2777 2.7173 -7.9473 26 7 -1.9033 2.0526 -6.6369 27 6 -0.0945 0.7885 -4.6301 28 7 0.7463 0.2735 -3.7562 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 0.7090 1.1613 3.4845 33 1 2.4157 -2.7376 -0.9719 34 1 0.6904 -2.3002 -0.9847 35 1 1.6238 -2.2851 -2.5002 36 1 3.2191 2.4945 -3.8530 37 1 1.6949 3.5272 -5.5202 38 1 -1.0287 0.2865 -4.8338 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589787240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:58 Heat of formation + Delta-G solvation = 73.604044 kcal Electronic energy + Delta-G solvation = -26837.300651 eV Core-core repulsion = 22844.680672 eV Total energy + Delta-G solvation = -3992.619980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.62854 -41.36518 -38.36069 -37.89366 -37.00857 -35.82636 -35.03760 -34.50673 -33.61442 -32.18010 -30.87280 -27.25110 -27.02236 -26.57401 -26.13164 -24.58279 -23.50720 -22.48801 -20.46898 -20.26519 -19.15728 -18.57133 -18.29135 -18.21958 -17.79511 -17.43829 -17.11951 -16.38633 -16.00563 -15.40223 -15.24146 -15.15896 -14.81039 -14.64203 -14.45586 -14.12445 -13.70731 -13.47499 -13.39613 -13.26454 -13.14218 -12.94523 -12.74551 -12.70245 -12.58410 -12.52871 -12.42713 -12.30207 -12.19025 -12.10994 -11.84709 -11.11778 -11.08417 -10.91591 -10.45786 -10.41113 -9.62717 -8.07257 -6.20691 -1.07209 -0.65392 -0.05037 0.01426 0.94132 1.26916 1.47785 1.49560 1.56438 1.83400 2.31210 2.37044 2.48128 2.62232 2.89416 3.19579 3.21645 3.54750 3.60058 3.76827 3.85315 3.94877 4.16435 4.24499 4.40850 4.59229 4.76950 4.78567 4.91388 5.04586 5.09073 5.17731 5.18482 5.24004 5.50618 5.65171 5.76462 5.90467 6.14865 6.33014 6.34475 6.86524 6.95318 7.47947 8.97023 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019181 B = 0.003099 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.436325 B = 9032.610929 C = 9627.765668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H 0.028 0.972 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.972 5.972 13 C 0.107 3.893 14 S 2.699 3.301 15 O -0.976 6.976 16 O -0.975 6.975 17 C -0.436 4.436 18 C -0.093 4.093 19 C -0.038 4.038 20 C -0.022 4.022 21 C 0.204 3.796 22 N -0.281 5.281 23 N -0.048 5.048 24 N -0.192 5.192 25 H 0.498 0.502 26 N -0.278 5.278 27 C 0.121 3.879 28 N -0.408 5.408 29 H 0.027 0.973 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.264 0.736 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.174 0.826 37 H 0.185 0.815 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.107 2.654 -20.571 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.169 3.831 3 H 0.046 0.954 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.191 1.191 12 N -0.813 5.813 13 C -0.038 4.038 14 S 2.788 3.212 15 O -0.966 6.966 16 O -0.965 6.965 17 C -0.656 4.656 18 C -0.114 4.114 19 C -0.067 4.067 20 C -0.027 4.027 21 C -0.076 4.076 22 N -0.153 5.153 23 N -0.043 5.043 24 N -0.044 5.044 25 H 0.358 0.642 26 N -0.131 5.131 27 C -0.043 4.043 28 N -0.117 5.117 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.192 0.808 37 H 0.202 0.798 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -7.702 2.488 -20.467 22.010 hybrid contribution -0.559 0.377 0.316 0.745 sum -8.261 2.865 -20.151 21.967 Atomic orbital electron populations 1.21884 0.97031 1.00313 0.99997 1.18476 0.92216 0.91534 0.80884 0.95417 1.21612 1.31718 1.13140 0.91108 0.92058 1.25631 0.95194 0.95691 1.01621 1.69979 1.37324 1.23742 1.24382 0.85641 0.78545 0.78986 0.78636 1.20281 1.20902 1.19141 1.57024 1.70037 1.20832 1.33364 1.21371 1.01850 0.79549 1.01056 1.01826 0.73777 0.72957 0.72644 1.93534 1.69042 1.58946 1.75036 1.93577 1.74310 1.57174 1.71424 1.33793 1.08503 1.06271 1.16995 1.22140 1.02112 0.93129 0.94023 1.21981 0.90779 0.99822 0.94089 1.18557 0.93111 0.96229 0.94815 1.23213 0.92313 0.92252 0.99855 1.76087 1.16393 1.15864 1.06987 1.78903 0.96852 1.11074 1.17478 1.47835 1.19528 1.12106 1.24926 0.64210 1.74914 1.10139 1.20003 1.08044 1.23523 0.99114 0.91722 0.89943 1.67870 1.00700 1.30792 1.12323 0.95390 0.93595 0.91500 0.92668 0.93322 0.90235 0.90365 0.80828 0.79784 0.78590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.10 8.95 71.98 0.64 -5.46 16 2 C 0.27 13.53 2.62 44.24 0.12 13.64 16 3 H 0.03 1.55 6.91 -2.39 -0.02 1.53 16 4 C -0.54 -28.90 8.37 25.60 0.21 -28.68 16 5 H 0.06 3.25 7.65 -2.91 -0.02 3.23 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.92 -51.38 11.32 21.45 0.24 -51.13 16 8 Si 0.96 43.06 29.54 68.60 2.03 45.08 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 12 N -0.97 -40.98 3.00 -520.49 -1.56 -42.54 16 13 C 0.11 3.81 9.53 127.77 1.22 5.03 16 14 S 2.70 107.43 5.60 -56.49 -0.32 107.12 16 15 O -0.98 -40.23 17.09 -128.00 -2.19 -42.42 16 16 O -0.97 -44.31 16.20 -128.00 -2.07 -46.39 16 17 C -0.44 -14.27 6.77 84.70 0.57 -13.69 16 18 C -0.09 -2.46 9.56 22.33 0.21 -2.25 16 19 C -0.04 -0.83 9.84 22.67 0.22 -0.60 16 20 C -0.02 -0.48 5.89 -19.94 -0.12 -0.60 16 21 C 0.20 4.03 7.95 137.39 1.09 5.12 16 22 N -0.28 -5.65 12.31 -52.18 -0.64 -6.29 16 23 N -0.05 -0.76 13.47 37.02 0.50 -0.26 16 24 N -0.19 -1.92 7.90 37.02 0.29 -1.62 16 25 H 0.50 -0.17 8.96 -347.53 -3.12 -3.28 16 26 N -0.28 -4.35 12.11 -52.13 -0.63 -4.98 16 27 C 0.12 2.91 10.87 84.95 0.92 3.83 16 28 N -0.41 -12.42 10.22 -192.47 -1.97 -14.39 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.96 6.66 -2.39 -0.02 1.95 16 31 H 0.07 3.42 6.07 -2.38 -0.01 3.41 16 32 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.71 6.43 -2.38 -0.02 2.70 16 35 H 0.08 2.41 7.79 -2.39 -0.02 2.39 16 36 H 0.17 3.90 7.93 -2.91 -0.02 3.88 16 37 H 0.18 2.89 7.97 -2.91 -0.02 2.87 16 38 H 0.20 3.61 7.90 -2.91 -0.02 3.58 16 Total: -1.00 -73.17 344.58 -2.75 -75.92 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -1.98 Total: 4.12 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 5.55 Total: -22.21 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -3.77 Total: -121.21 kcal Atomic # 8 Polarization: -84.55 SS G_CDS: -4.26 Total: -88.81 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 107.43 SS G_CDS: -0.32 Total: 107.12 kcal Total: -73.17 -2.75 -75.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.520 kcal (2) G-P(sol) polarization free energy of solvation -73.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds