Wall clock time and date at job start Tue Mar 31 2020 21:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47276 * 2 1 4 4 C 1.50692 * 109.46884 * 119.99913 * 2 1 3 5 5 H 1.08002 * 120.00033 * 120.00299 * 4 2 1 6 6 C 1.37879 * 120.00379 * 299.99707 * 4 2 1 7 7 N 1.31515 * 119.99437 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00305 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47297 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47288 * 120.00167 * 8 6 4 11 11 H 1.48505 * 109.47628 * 240.00222 * 8 6 4 12 12 N 1.46500 * 109.46812 * 240.00129 * 2 1 3 13 13 C 1.46497 * 119.99937 * 293.99371 * 12 2 1 14 14 S 1.65603 * 120.00133 * 114.00470 * 12 2 1 15 15 O 1.42102 * 106.39863 * 338.72056 * 14 12 2 16 16 O 1.42098 * 106.40082 * 205.80664 * 14 12 2 17 17 C 1.76197 * 107.21901 * 92.26206 * 14 12 2 18 18 C 1.38458 * 120.46633 * 13.61742 * 17 14 12 19 19 C 1.38723 * 118.50978 * 180.27410 * 18 17 14 20 20 C 1.38298 * 119.35582 * 0.02562 * 19 18 17 21 21 N 1.31727 * 120.88951 * 359.97438 * 20 19 18 22 22 C 1.32654 * 121.61986 * 359.97438 * 21 20 19 23 23 C 1.48432 * 119.72226 * 180.02562 * 22 21 20 24 24 N 1.34063 * 126.67469 * 173.10085 * 23 22 21 25 25 N 1.28982 * 107.26770 * 179.97438 * 24 23 22 26 26 N 1.28734 * 108.94654 * 0.02562 * 25 24 23 27 27 H 0.96998 * 125.33772 * 179.97438 * 26 25 24 28 28 N 1.28869 * 109.32062 * 359.76200 * 26 25 24 29 29 H 1.08997 * 109.47058 * 300.00172 * 1 2 3 30 30 H 1.08999 * 109.46767 * 60.00143 * 1 2 3 31 31 H 1.08998 * 109.47276 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99581 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47850 * 270.00504 * 13 12 2 34 34 H 1.08998 * 109.47320 * 30.00870 * 13 12 2 35 35 H 1.09004 * 109.47466 * 150.00492 * 13 12 2 36 36 H 1.08004 * 120.74372 * 0.24916 * 18 17 14 37 37 H 1.08003 * 120.32361 * 180.02562 * 19 18 17 38 38 H 1.08001 * 119.55385 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3213 -1.1203 4.0079 9 1 3.1463 -2.2870 3.6038 10 1 3.1466 -0.1873 4.8165 11 1 1.1660 -1.5866 4.8161 12 7 2.0183 -0.6906 -1.1962 13 6 1.7761 -2.1256 -1.3637 14 16 2.8444 0.1509 -2.3590 15 8 2.4954 1.5179 -2.1890 16 8 2.6522 -0.5545 -3.5774 17 6 4.5594 0.0238 -1.9754 18 6 5.0045 -0.9028 -1.0478 19 6 6.3628 -0.9641 -0.7726 20 6 7.2266 -0.1047 -1.4267 21 7 6.7763 0.7677 -2.3050 22 6 5.4855 0.8575 -2.5971 23 6 5.0242 1.8556 -3.5941 24 7 3.7840 1.9804 -4.0875 25 7 3.8010 2.9638 -4.9220 26 7 4.9913 3.4520 -4.9685 27 1 5.2700 4.1993 -5.5204 28 7 5.7533 2.7949 -4.1633 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7082 1.1609 3.4843 33 1 2.6011 -2.6872 -0.9252 34 1 0.8458 -2.3977 -0.8650 35 1 1.7009 -2.3600 -2.4256 36 1 4.3098 -1.5627 -0.5495 37 1 6.7420 -1.6761 -0.0544 38 1 8.2847 -0.1499 -1.2151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589787327.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:15 Heat of formation + Delta-G solvation = 116.818029 kcal Electronic energy + Delta-G solvation = -28251.239500 eV Core-core repulsion = 24260.493420 eV Total energy + Delta-G solvation = -3990.746081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.53261 -40.16908 -36.45833 -36.27940 -35.22003 -34.44067 -33.73494 -32.76492 -32.52785 -31.02901 -29.12183 -25.72968 -25.24842 -25.23733 -24.97378 -23.59468 -22.20912 -20.76168 -19.46476 -18.51750 -17.46300 -17.22366 -16.97951 -16.84791 -16.41817 -15.94623 -15.33593 -14.73047 -14.62504 -14.12719 -14.10181 -13.78036 -13.46191 -12.98280 -12.84364 -12.72671 -12.32775 -11.88693 -11.74565 -11.47884 -11.36150 -11.29702 -11.19869 -11.09955 -11.07741 -10.90720 -10.85014 -10.82414 -10.45063 -10.26594 -10.15625 -10.03075 -9.70575 -9.20809 -9.17279 -8.53183 -8.02057 -6.13585 -4.22983 0.28399 0.93604 1.05299 1.16099 2.13310 2.19200 3.14656 3.20193 3.28616 3.29840 3.57293 3.64407 3.92808 4.29549 4.32011 4.63524 4.81281 4.86796 4.97410 5.17440 5.21100 5.27795 5.33930 5.47764 5.69270 5.81405 5.91700 6.12237 6.29964 6.31351 6.40176 6.62666 6.84717 6.91791 7.09967 7.44659 7.57120 7.59204 7.76062 8.01660 8.05386 8.21814 8.79255 9.43689 10.91630 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.004955 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.940375 B = 5649.927238 C = 6419.050068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.061 0.939 4 C -0.529 4.529 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.985 5.985 13 C 0.093 3.907 14 S 2.698 3.302 15 O -0.933 6.933 16 O -0.959 6.959 17 C -0.683 4.683 18 C 0.025 3.975 19 C -0.173 4.173 20 C 0.140 3.860 21 N -0.467 5.467 22 C 0.292 3.708 23 C 0.194 3.806 24 N -0.245 5.245 25 N -0.028 5.028 26 N -0.228 5.228 27 H 0.478 0.522 28 N -0.250 5.250 29 H 0.093 0.907 30 H 0.015 0.985 31 H 0.033 0.967 32 H 0.264 0.736 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.164 0.836 37 H 0.150 0.850 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.079 -1.347 -9.454 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.079 0.921 4 C -0.568 4.568 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.827 5.827 13 C -0.053 4.053 14 S 2.782 3.218 15 O -0.922 6.922 16 O -0.949 6.949 17 C -0.767 4.767 18 C -0.001 4.001 19 C -0.194 4.194 20 C -0.018 4.018 21 N -0.178 5.178 22 C 0.151 3.849 23 C -0.087 4.087 24 N -0.120 5.120 25 N -0.024 5.024 26 N -0.075 5.075 27 H 0.332 0.668 28 N -0.102 5.102 29 H 0.112 0.888 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.181 0.819 37 H 0.168 0.832 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.865 0.059 -10.800 14.627 hybrid contribution 0.979 -0.868 1.909 2.314 sum 10.844 -0.810 -8.892 14.047 Atomic orbital electron populations 1.22073 0.97760 0.99718 1.01024 1.18816 0.92007 0.92937 0.79977 0.92149 1.21366 1.32254 1.13092 0.90108 0.91821 1.24924 0.94916 0.94922 0.98995 1.69895 1.35955 1.22500 1.23777 0.86506 0.78712 0.79561 0.82982 1.19709 1.21018 1.20887 1.57622 1.68111 1.18460 1.38516 1.21387 1.02500 0.80554 1.00870 1.02289 0.72624 0.73980 0.72936 1.93569 1.80901 1.32140 1.85601 1.93506 1.84501 1.74796 1.42090 1.32490 1.29751 1.05731 1.08748 1.21561 0.96769 0.92300 0.89456 1.22421 0.94317 1.01279 1.01432 1.22981 1.00704 0.88741 0.89328 1.67518 1.13916 1.20827 1.15494 1.16928 0.89150 0.88992 0.89873 1.23213 0.87739 0.97173 1.00532 1.75978 1.17580 1.11799 1.06668 1.78914 1.04127 1.05406 1.13908 1.47842 1.04761 1.26067 1.28808 0.66767 1.74989 1.22217 1.06974 1.06015 0.88819 0.96561 0.94750 0.92611 0.93891 0.89943 0.91588 0.81885 0.83179 0.81276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.05 37.16 0.34 -3.09 16 2 C 0.27 6.34 2.57 -69.08 -0.18 6.16 16 3 H 0.06 1.62 6.97 -51.93 -0.36 1.26 16 4 C -0.53 -12.92 8.30 -34.44 -0.29 -13.21 16 5 H 0.06 1.45 7.16 -52.49 -0.38 1.08 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.88 -23.81 11.32 55.43 0.63 -23.18 16 8 Si 0.89 19.60 29.54 -169.99 -5.02 14.58 16 9 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.99 -20.24 2.25 -115.85 -0.26 -20.50 16 13 C 0.09 1.57 9.40 59.85 0.56 2.14 16 14 S 2.70 56.92 4.04 -107.50 -0.43 56.49 16 15 O -0.93 -22.28 13.94 -57.17 -0.80 -23.08 16 16 O -0.96 -20.79 16.23 -57.17 -0.93 -21.72 16 17 C -0.68 -12.81 5.87 -39.12 -0.23 -13.04 16 18 C 0.02 0.39 9.68 -39.32 -0.38 0.01 16 19 C -0.17 -2.16 10.11 -39.38 -0.40 -2.56 16 20 C 0.14 1.75 11.18 -17.57 -0.20 1.55 16 21 N -0.47 -7.57 10.29 -9.77 -0.10 -7.67 16 22 C 0.29 5.43 6.75 -82.94 -0.56 4.87 16 23 C 0.19 3.65 7.71 -156.29 -1.20 2.45 16 24 N -0.25 -4.89 7.81 32.15 0.25 -4.64 16 25 N -0.03 -0.45 13.47 60.35 0.81 0.36 16 26 N -0.23 -2.76 7.90 60.35 0.48 -2.28 16 27 H 0.48 2.79 8.96 -340.37 -3.05 -0.26 16 28 N -0.25 -3.86 12.39 32.17 0.40 -3.46 16 29 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.03 0.74 6.91 -51.93 -0.36 0.38 16 32 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.04 0.62 6.95 -51.93 -0.36 0.26 16 34 H 0.08 1.37 6.76 -51.93 -0.35 1.02 16 35 H 0.07 1.03 7.04 -51.93 -0.37 0.66 16 36 H 0.16 2.43 5.99 -52.48 -0.31 2.12 16 37 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 331.80 15.07 5.00 5.00 Total: -1.00 -34.69 331.80 -8.86 -43.56 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.26 Total: -0.31 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -2.63 Total: -13.14 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: 2.20 Total: -61.37 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -1.72 Total: -44.80 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 16 Polarization: 56.92 SS G_CDS: -0.43 Total: 56.49 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.69 -8.86 -43.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787327.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.373 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds