Wall clock time and date at job start Tue Mar 31 2020 21:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47276 * 2 1 4 4 C 1.50692 * 109.46884 * 119.99913 * 2 1 3 5 5 H 1.08002 * 120.00033 * 120.00299 * 4 2 1 6 6 C 1.37879 * 120.00379 * 299.99707 * 4 2 1 7 7 N 1.31515 * 119.99437 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00305 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47297 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47288 * 120.00167 * 8 6 4 11 11 H 1.48505 * 109.47628 * 240.00222 * 8 6 4 12 12 N 1.46500 * 109.46812 * 240.00129 * 2 1 3 13 13 C 1.46497 * 119.99937 * 293.99371 * 12 2 1 14 14 S 1.65603 * 120.00133 * 114.00470 * 12 2 1 15 15 O 1.42102 * 106.39863 * 338.72056 * 14 12 2 16 16 O 1.42098 * 106.40082 * 205.80664 * 14 12 2 17 17 C 1.76197 * 107.21901 * 92.26206 * 14 12 2 18 18 C 1.38458 * 120.46633 * 13.61742 * 17 14 12 19 19 C 1.38723 * 118.50978 * 180.27410 * 18 17 14 20 20 C 1.38298 * 119.35582 * 0.02562 * 19 18 17 21 21 N 1.31727 * 120.88951 * 359.97438 * 20 19 18 22 22 C 1.32654 * 121.61986 * 359.97438 * 21 20 19 23 23 C 1.48432 * 119.72226 * 180.02562 * 22 21 20 24 24 N 1.34063 * 126.67469 * 173.10085 * 23 22 21 25 25 N 1.28982 * 107.26770 * 179.97438 * 24 23 22 26 26 N 1.28734 * 108.94654 * 0.02562 * 25 24 23 27 27 H 0.96998 * 125.33772 * 179.97438 * 26 25 24 28 28 N 1.28869 * 109.32062 * 359.76200 * 26 25 24 29 29 H 1.08997 * 109.47058 * 300.00172 * 1 2 3 30 30 H 1.08999 * 109.46767 * 60.00143 * 1 2 3 31 31 H 1.08998 * 109.47276 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99581 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47850 * 270.00504 * 13 12 2 34 34 H 1.08998 * 109.47320 * 30.00870 * 13 12 2 35 35 H 1.09004 * 109.47466 * 150.00492 * 13 12 2 36 36 H 1.08004 * 120.74372 * 0.24916 * 18 17 14 37 37 H 1.08003 * 120.32361 * 180.02562 * 19 18 17 38 38 H 1.08001 * 119.55385 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3213 -1.1203 4.0079 9 1 3.1463 -2.2870 3.6038 10 1 3.1466 -0.1873 4.8165 11 1 1.1660 -1.5866 4.8161 12 7 2.0183 -0.6906 -1.1962 13 6 1.7761 -2.1256 -1.3637 14 16 2.8444 0.1509 -2.3590 15 8 2.4954 1.5179 -2.1890 16 8 2.6522 -0.5545 -3.5774 17 6 4.5594 0.0238 -1.9754 18 6 5.0045 -0.9028 -1.0478 19 6 6.3628 -0.9641 -0.7726 20 6 7.2266 -0.1047 -1.4267 21 7 6.7763 0.7677 -2.3050 22 6 5.4855 0.8575 -2.5971 23 6 5.0242 1.8556 -3.5941 24 7 3.7840 1.9804 -4.0875 25 7 3.8010 2.9638 -4.9220 26 7 4.9913 3.4520 -4.9685 27 1 5.2700 4.1993 -5.5204 28 7 5.7533 2.7949 -4.1633 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7082 1.1609 3.4843 33 1 2.6011 -2.6872 -0.9252 34 1 0.8458 -2.3977 -0.8650 35 1 1.7009 -2.3600 -2.4256 36 1 4.3098 -1.5627 -0.5495 37 1 6.7420 -1.6761 -0.0544 38 1 8.2847 -0.1499 -1.2151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589787327.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:15 Heat of formation + Delta-G solvation = 89.498857 kcal Electronic energy + Delta-G solvation = -28252.424148 eV Core-core repulsion = 24260.493420 eV Total energy + Delta-G solvation = -3991.930729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.77062 -41.30886 -38.14133 -37.96179 -36.82454 -35.75774 -34.96633 -34.48513 -33.81801 -32.18497 -30.91897 -27.22510 -27.09121 -26.52950 -26.22027 -24.78268 -23.43815 -22.56082 -20.67310 -19.96808 -18.88467 -18.48063 -18.41524 -18.26841 -18.07883 -17.25966 -17.05285 -16.31858 -15.79976 -15.43811 -15.40713 -15.18897 -15.01917 -14.59528 -14.22973 -14.01889 -13.63335 -13.48891 -13.31288 -13.16190 -13.04384 -12.87975 -12.75029 -12.61959 -12.59854 -12.39396 -12.28424 -12.21260 -12.12700 -12.10174 -11.79833 -11.37067 -11.13881 -10.80125 -10.47304 -10.30119 -9.66617 -8.04820 -6.20364 -0.93113 -0.52258 -0.20606 -0.05893 0.90991 1.16069 1.50130 1.52716 1.62704 1.87989 2.20520 2.44393 2.50578 2.68790 2.80738 3.24919 3.51904 3.59402 3.74762 3.76267 3.82334 4.01385 4.19109 4.25083 4.36619 4.66345 4.78476 4.82276 4.91766 5.01007 5.07050 5.20402 5.21792 5.37872 5.44926 5.65147 5.75397 5.87611 6.11327 6.31620 6.45681 6.79407 6.89456 7.49893 9.00833 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.004955 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.940375 B = 5649.927238 C = 6419.050068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.272 3.728 3 H 0.021 0.979 4 C -0.526 4.526 5 H 0.083 0.917 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.250 1.250 10 H -0.290 1.290 11 H -0.287 1.287 12 N -0.989 5.989 13 C 0.083 3.917 14 S 2.706 3.294 15 O -0.975 6.975 16 O -0.977 6.977 17 C -0.704 4.704 18 C 0.008 3.992 19 C -0.154 4.154 20 C 0.146 3.854 21 N -0.479 5.479 22 C 0.268 3.732 23 C 0.171 3.829 24 N -0.292 5.292 25 N -0.036 5.036 26 N -0.188 5.188 27 H 0.501 0.499 28 N -0.242 5.242 29 H 0.071 0.929 30 H 0.015 0.985 31 H 0.050 0.950 32 H 0.262 0.738 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.169 0.831 37 H 0.199 0.801 38 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.056 -3.321 -8.641 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.168 3.832 3 H 0.039 0.961 4 C -0.565 4.565 5 H 0.101 0.899 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.173 1.173 10 H -0.216 1.216 11 H -0.213 1.213 12 N -0.830 5.830 13 C -0.062 4.062 14 S 2.795 3.205 15 O -0.964 6.964 16 O -0.967 6.967 17 C -0.793 4.793 18 C -0.018 4.018 19 C -0.174 4.174 20 C -0.011 4.011 21 N -0.190 5.190 22 C 0.127 3.873 23 C -0.110 4.110 24 N -0.166 5.166 25 N -0.031 5.031 26 N -0.041 5.041 27 H 0.363 0.637 28 N -0.096 5.096 29 H 0.089 0.911 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.187 0.813 37 H 0.217 0.783 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 12.792 -1.922 -10.043 16.376 hybrid contribution 0.212 -0.202 1.584 1.611 sum 13.004 -2.124 -8.459 15.658 Atomic orbital electron populations 1.21983 0.97934 1.00337 0.99879 1.18487 0.91893 0.91476 0.81382 0.96147 1.21678 1.31696 1.13202 0.89970 0.89860 1.25758 0.95202 0.95554 1.02100 1.70057 1.37595 1.24278 1.24200 0.85480 0.78050 0.78885 0.79060 1.17307 1.21645 1.21330 1.57426 1.68734 1.19763 1.37076 1.21678 1.03820 0.78699 1.02019 1.01565 0.73460 0.72947 0.72569 1.93506 1.82362 1.34472 1.86049 1.93463 1.85466 1.74817 1.42914 1.31995 1.27742 1.08234 1.11341 1.21838 0.98871 0.91949 0.89111 1.22970 0.92483 1.01082 1.00880 1.23968 1.03103 0.86821 0.87176 1.67612 1.12484 1.22129 1.16759 1.17074 0.90162 0.89481 0.90570 1.23521 0.87753 0.98288 1.01466 1.75932 1.18928 1.13464 1.08234 1.78806 1.05293 1.05254 1.13788 1.47897 1.03468 1.25443 1.27309 0.63740 1.74924 1.22045 1.06527 1.06089 0.91082 0.96601 0.93129 0.92901 0.91000 0.89737 0.90546 0.81319 0.78342 0.76112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.84 9.05 71.98 0.65 -6.19 16 2 C 0.27 13.27 2.57 44.25 0.11 13.38 16 3 H 0.02 1.17 6.97 -2.39 -0.02 1.15 16 4 C -0.53 -25.32 8.30 25.60 0.21 -25.11 16 5 H 0.08 3.59 7.16 -2.91 -0.02 3.57 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -50.77 11.32 21.45 0.24 -50.53 16 8 Si 0.96 39.23 29.54 68.60 2.03 41.26 16 9 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 10 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 12 N -0.99 -40.94 2.25 -520.45 -1.17 -42.11 16 13 C 0.08 2.70 9.40 127.77 1.20 3.90 16 14 S 2.71 117.80 4.04 -56.49 -0.23 117.57 16 15 O -0.97 -49.38 13.94 -128.00 -1.78 -51.16 16 16 O -0.98 -43.67 16.23 -128.00 -2.08 -45.75 16 17 C -0.70 -26.35 5.87 22.57 0.13 -26.21 16 18 C 0.01 0.23 9.68 22.44 0.22 0.45 16 19 C -0.15 -3.14 10.11 22.40 0.23 -2.91 16 20 C 0.15 3.04 11.18 84.72 0.95 3.98 16 21 N -0.48 -14.54 10.29 -184.82 -1.90 -16.44 16 22 C 0.27 9.92 6.75 41.98 0.28 10.20 16 23 C 0.17 6.52 7.71 137.36 1.06 7.58 16 24 N -0.29 -12.06 7.81 -52.19 -0.41 -12.47 16 25 N -0.04 -1.19 13.47 37.02 0.50 -0.69 16 26 N -0.19 -4.47 7.90 37.02 0.29 -4.17 16 27 H 0.50 5.23 8.96 -347.54 -3.12 2.12 16 28 N -0.24 -7.40 12.39 -52.14 -0.65 -8.05 16 29 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 30 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 2.20 6.91 -2.39 -0.02 2.18 16 32 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 33 H 0.07 1.91 6.95 -2.38 -0.02 1.89 16 34 H 0.08 2.71 6.76 -2.39 -0.02 2.69 16 35 H 0.08 2.33 7.04 -2.38 -0.02 2.31 16 36 H 0.17 4.61 5.99 -2.91 -0.02 4.60 16 37 H 0.20 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.22 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -79.57 331.80 -1.63 -81.20 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -1.97 Total: 11.16 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 5.49 Total: -19.80 kcal Atomic # 7 Polarization: -131.38 SS G_CDS: -3.09 Total: -134.47 kcal Atomic # 8 Polarization: -93.05 SS G_CDS: -3.86 Total: -96.91 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 16 Polarization: 117.80 SS G_CDS: -0.23 Total: 117.57 kcal Total: -79.57 -1.63 -81.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787327.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.701 kcal (2) G-P(sol) polarization free energy of solvation -79.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds