Wall clock time and date at job start Tue Mar 31 2020 21:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47081 * 2 1 4 4 H 1.09004 * 109.47208 * 54.66871 * 3 2 1 5 5 C 1.50697 * 109.47264 * 174.66988 * 3 2 1 6 6 H 1.08000 * 120.00124 * 119.99970 * 5 3 2 7 7 C 1.37881 * 119.99713 * 300.00347 * 5 3 2 8 8 N 1.31519 * 119.99439 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00379 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47093 * 89.99878 * 9 7 5 11 11 H 1.48495 * 109.47460 * 210.00217 * 9 7 5 12 12 H 1.48505 * 109.46806 * 330.00104 * 9 7 5 13 13 N 1.46500 * 109.47200 * 294.67332 * 3 2 1 14 14 S 1.65598 * 120.00131 * 144.00371 * 13 3 2 15 15 O 1.42096 * 106.40116 * 176.78565 * 14 13 3 16 16 O 1.42098 * 106.40365 * 309.71076 * 14 13 3 17 17 C 1.76205 * 107.21545 * 63.25109 * 14 13 3 18 18 C 1.38304 * 119.49013 * 90.00286 * 17 14 13 19 19 C 1.38430 * 119.27565 * 180.02562 * 18 17 14 20 20 C 1.39723 * 118.31742 * 359.97438 * 19 18 17 21 21 C 1.48463 * 120.53432 * 179.97438 * 20 19 18 22 22 N 1.34054 * 126.67269 * 359.69196 * 21 20 19 23 23 N 1.28986 * 107.26782 * 179.83643 * 22 21 20 24 24 N 1.28733 * 108.94363 * 0.43267 * 23 22 21 25 25 H 0.96997 * 125.33938 * 179.70857 * 24 23 22 26 26 N 1.28876 * 109.31760 * 359.72490 * 24 23 22 27 27 C 1.39261 * 118.93508 * 0.02562 * 20 19 18 28 28 N 1.31751 * 120.60210 * 359.72894 * 27 20 19 29 29 H 1.09000 * 109.46907 * 55.44990 * 1 2 3 30 30 H 1.08997 * 109.46780 * 175.44991 * 1 2 3 31 31 H 1.09001 * 109.46828 * 295.45123 * 1 2 3 32 32 H 1.08990 * 109.47072 * 240.00212 * 2 1 3 33 33 H 1.09001 * 109.47184 * 119.99856 * 2 1 3 34 34 H 0.97007 * 119.99104 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00019 * 323.99775 * 13 3 2 36 36 H 1.07992 * 120.36331 * 0.02562 * 18 17 14 37 37 H 1.08000 * 120.83911 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.69975 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6009 1.9832 0.8384 5 6 3.5413 1.4446 0.1320 6 1 4.1508 1.8877 -0.6417 7 6 4.1366 0.8808 1.2405 8 7 5.4468 0.8822 1.3554 9 14 3.0824 0.1149 2.5790 10 1 2.8622 -1.3217 2.2743 11 1 3.7730 0.2433 3.8873 12 1 1.7738 0.8144 2.6393 13 7 1.6593 2.0951 -1.2551 14 16 1.2387 3.6968 -1.2612 15 8 1.0009 4.0440 -2.6184 16 8 0.2692 3.8610 -0.2354 17 6 2.6579 4.6105 -0.7553 18 6 3.5586 5.0518 -1.7076 19 6 4.6723 5.7687 -1.3052 20 6 4.8417 6.0197 0.0588 21 6 6.0185 6.7833 0.5448 22 7 7.0075 7.2921 -0.2036 23 7 7.8288 7.8821 0.5970 24 7 7.4000 7.7547 1.8041 25 1 7.8383 8.1053 2.5952 26 7 6.2971 7.0879 1.7966 27 6 3.8895 5.5412 0.9553 28 7 2.8423 4.8672 0.5251 29 1 -0.3633 0.5828 -0.8464 30 1 -0.3633 -1.0244 -0.0815 31 1 -0.3633 0.4416 0.9280 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.8655 0.4858 2.1354 35 1 1.6535 1.5891 -2.0826 36 1 3.3949 4.8393 -2.7537 37 1 5.3920 6.1250 -2.0274 38 1 4.0084 5.7278 2.0124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590419947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:34 Heat of formation + Delta-G solvation = 93.996308 kcal Electronic energy + Delta-G solvation = -27299.698380 eV Core-core repulsion = 23307.962675 eV Total energy + Delta-G solvation = -3991.735705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.60304 -39.94586 -36.88993 -36.25827 -35.41617 -34.72059 -33.92473 -32.26957 -32.24343 -31.12179 -30.89754 -27.24675 -25.36826 -25.01069 -23.31112 -22.74050 -22.27311 -20.66648 -19.48154 -19.25711 -17.98974 -17.28401 -17.12756 -16.71233 -16.59765 -16.29010 -15.49458 -14.70203 -14.63662 -14.11332 -14.03741 -13.94924 -13.53779 -13.32733 -12.78211 -12.71956 -12.43319 -12.26490 -12.07766 -11.75476 -11.64881 -11.62064 -11.52436 -11.34964 -11.32309 -11.19107 -10.98022 -10.82217 -10.58723 -10.07491 -9.82866 -9.70259 -9.48364 -9.40690 -9.08422 -8.66828 -8.41494 -6.20141 -4.21829 0.26077 0.87477 1.01048 1.34578 2.07408 2.14802 3.20031 3.33598 3.35994 3.43118 3.47348 3.74463 4.00874 4.21975 4.30453 4.36603 4.83652 4.98870 5.08290 5.10200 5.18905 5.28819 5.38292 5.68216 5.78206 5.84518 5.89607 5.99665 6.05076 6.21147 6.23053 6.50149 6.53046 6.57493 6.67776 6.89183 7.21062 7.48425 7.74351 7.83566 7.97998 8.35271 8.81031 9.40724 10.91925 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012144 B = 0.004711 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.058660 B = 5942.164272 C = 7542.143116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.132 4.132 3 C 0.244 3.756 4 H 0.057 0.943 5 C -0.533 4.533 6 H 0.079 0.921 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.257 1.257 13 N -1.088 6.088 14 S 2.703 3.297 15 O -0.972 6.972 16 O -0.942 6.942 17 C -0.404 4.404 18 C -0.087 4.087 19 C -0.048 4.048 20 C -0.026 4.026 21 C 0.223 3.777 22 N -0.263 5.263 23 N -0.050 5.050 24 N -0.225 5.225 25 H 0.476 0.524 26 N -0.282 5.282 27 C 0.131 3.869 28 N -0.371 5.371 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.265 0.735 35 H 0.411 0.589 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 10.052 -1.430 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.171 4.171 3 C 0.138 3.862 4 H 0.075 0.925 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.703 3.297 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.181 1.181 13 N -0.849 5.849 14 S 2.787 3.213 15 O -0.961 6.961 16 O -0.932 6.932 17 C -0.623 4.623 18 C -0.108 4.108 19 C -0.076 4.076 20 C -0.031 4.031 21 C -0.058 4.058 22 N -0.136 5.136 23 N -0.045 5.045 24 N -0.071 5.071 25 H 0.331 0.669 26 N -0.133 5.133 27 C -0.032 4.032 28 N -0.079 5.079 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.245 0.755 36 H 0.175 0.825 37 H 0.171 0.829 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.635 10.514 -0.823 10.565 hybrid contribution 1.323 -0.446 0.739 1.579 sum 0.687 10.068 -0.084 10.092 Atomic orbital electron populations 1.21873 0.97287 1.00314 1.01847 1.22137 0.94045 0.99038 1.01901 1.19108 0.95942 0.90183 0.80948 0.92549 1.21310 0.89211 1.39626 1.07086 0.90314 1.24858 0.94739 0.95216 0.97566 1.69889 1.08873 1.44671 1.29413 0.87059 0.81417 0.79957 0.81303 1.20259 1.22215 1.18130 1.55226 1.85858 1.26237 1.17575 1.01837 0.73489 0.72996 0.72954 1.93568 1.84321 1.83737 1.34508 1.93574 1.55282 1.85316 1.59010 1.33820 1.20654 1.11919 0.95930 1.21838 0.92870 0.94909 1.01157 1.21596 0.96806 0.94855 0.94391 1.18437 0.91329 0.98394 0.94986 1.23440 0.96821 1.00272 0.85242 1.76076 1.01404 1.11003 1.25127 1.78894 1.20552 1.16367 0.88652 1.47725 1.14528 1.34769 1.10121 0.66928 1.74966 1.02674 1.13077 1.22611 1.23061 0.88351 0.91573 1.00227 1.67854 1.19339 1.06909 1.13816 0.92780 0.93779 0.92992 0.91501 0.92223 0.92552 0.75461 0.82496 0.82943 0.81231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.86 37.16 0.37 -2.27 16 2 C -0.13 -2.61 5.04 -26.73 -0.13 -2.74 16 3 C 0.24 5.28 1.85 -69.08 -0.13 5.15 16 4 H 0.06 1.32 6.61 -51.93 -0.34 0.97 16 5 C -0.53 -13.47 9.42 -34.44 -0.32 -13.80 16 6 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 7 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 8 N -0.89 -25.58 13.96 55.43 0.77 -24.80 16 9 Si 0.87 20.70 24.41 -169.99 -4.15 16.55 16 10 H -0.28 -6.30 6.83 56.52 0.39 -5.92 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.26 -5.89 6.53 56.52 0.37 -5.52 16 13 N -1.09 -19.89 4.84 -5.88 -0.03 -19.91 16 14 S 2.70 49.71 5.76 -107.50 -0.62 49.09 16 15 O -0.97 -17.57 17.25 -57.17 -0.99 -18.56 16 16 O -0.94 -19.71 17.26 -57.17 -0.99 -20.69 16 17 C -0.40 -7.44 6.80 -17.50 -0.12 -7.56 16 18 C -0.09 -1.36 9.54 -39.49 -0.38 -1.74 16 19 C -0.05 -0.71 9.84 -38.96 -0.38 -1.09 16 20 C -0.03 -0.41 5.89 -104.75 -0.62 -1.03 16 21 C 0.22 3.28 7.95 -156.30 -1.24 2.04 16 22 N -0.26 -3.77 12.31 32.16 0.40 -3.38 16 23 N -0.05 -0.60 13.47 60.35 0.81 0.22 16 24 N -0.23 -2.16 7.90 60.35 0.48 -1.69 16 25 H 0.48 2.09 8.96 -340.37 -3.05 -0.97 16 26 N -0.28 -3.62 12.11 32.17 0.39 -3.24 16 27 C 0.13 2.27 10.87 -17.21 -0.19 2.08 16 28 N -0.37 -7.24 10.09 -12.18 -0.12 -7.36 16 29 H 0.05 0.84 7.64 -51.93 -0.40 0.45 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.27 3.22 -51.93 -0.17 1.10 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.41 6.31 8.85 -34.47 -0.30 6.00 16 36 H 0.16 2.04 7.60 -52.49 -0.40 1.64 16 37 H 0.15 1.85 7.97 -52.49 -0.42 1.43 16 38 H 0.17 2.57 7.90 -52.48 -0.41 2.16 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -34.27 341.85 -8.51 -42.78 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.37 Total: 4.77 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -3.24 Total: -18.92 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: 2.70 Total: -60.16 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -1.97 Total: -39.25 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.15 Total: 16.55 kcal Atomic # 16 Polarization: 49.71 SS G_CDS: -0.62 Total: 49.09 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.27 -8.51 -42.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.772 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds