Wall clock time and date at job start Tue Mar 31 2020 21:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47081 * 2 1 4 4 H 1.09004 * 109.47208 * 54.66871 * 3 2 1 5 5 C 1.50697 * 109.47264 * 174.66988 * 3 2 1 6 6 H 1.08000 * 120.00124 * 119.99970 * 5 3 2 7 7 C 1.37881 * 119.99713 * 300.00347 * 5 3 2 8 8 N 1.31519 * 119.99439 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00379 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47093 * 89.99878 * 9 7 5 11 11 H 1.48495 * 109.47460 * 210.00217 * 9 7 5 12 12 H 1.48505 * 109.46806 * 330.00104 * 9 7 5 13 13 N 1.46500 * 109.47200 * 294.67332 * 3 2 1 14 14 S 1.65598 * 120.00131 * 144.00371 * 13 3 2 15 15 O 1.42096 * 106.40116 * 176.78565 * 14 13 3 16 16 O 1.42098 * 106.40365 * 309.71076 * 14 13 3 17 17 C 1.76205 * 107.21545 * 63.25109 * 14 13 3 18 18 C 1.38304 * 119.49013 * 90.00286 * 17 14 13 19 19 C 1.38430 * 119.27565 * 180.02562 * 18 17 14 20 20 C 1.39723 * 118.31742 * 359.97438 * 19 18 17 21 21 C 1.48463 * 120.53432 * 179.97438 * 20 19 18 22 22 N 1.34054 * 126.67269 * 359.69196 * 21 20 19 23 23 N 1.28986 * 107.26782 * 179.83643 * 22 21 20 24 24 N 1.28733 * 108.94363 * 0.43267 * 23 22 21 25 25 H 0.96997 * 125.33938 * 179.70857 * 24 23 22 26 26 N 1.28876 * 109.31760 * 359.72490 * 24 23 22 27 27 C 1.39261 * 118.93508 * 0.02562 * 20 19 18 28 28 N 1.31751 * 120.60210 * 359.72894 * 27 20 19 29 29 H 1.09000 * 109.46907 * 55.44990 * 1 2 3 30 30 H 1.08997 * 109.46780 * 175.44991 * 1 2 3 31 31 H 1.09001 * 109.46828 * 295.45123 * 1 2 3 32 32 H 1.08990 * 109.47072 * 240.00212 * 2 1 3 33 33 H 1.09001 * 109.47184 * 119.99856 * 2 1 3 34 34 H 0.97007 * 119.99104 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00019 * 323.99775 * 13 3 2 36 36 H 1.07992 * 120.36331 * 0.02562 * 18 17 14 37 37 H 1.08000 * 120.83911 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.69975 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6009 1.9832 0.8384 5 6 3.5413 1.4446 0.1320 6 1 4.1508 1.8877 -0.6417 7 6 4.1366 0.8808 1.2405 8 7 5.4468 0.8822 1.3554 9 14 3.0824 0.1149 2.5790 10 1 2.8622 -1.3217 2.2743 11 1 3.7730 0.2433 3.8873 12 1 1.7738 0.8144 2.6393 13 7 1.6593 2.0951 -1.2551 14 16 1.2387 3.6968 -1.2612 15 8 1.0009 4.0440 -2.6184 16 8 0.2692 3.8610 -0.2354 17 6 2.6579 4.6105 -0.7553 18 6 3.5586 5.0518 -1.7076 19 6 4.6723 5.7687 -1.3052 20 6 4.8417 6.0197 0.0588 21 6 6.0185 6.7833 0.5448 22 7 7.0075 7.2921 -0.2036 23 7 7.8288 7.8821 0.5970 24 7 7.4000 7.7547 1.8041 25 1 7.8383 8.1053 2.5952 26 7 6.2971 7.0879 1.7966 27 6 3.8895 5.5412 0.9553 28 7 2.8423 4.8672 0.5251 29 1 -0.3633 0.5828 -0.8464 30 1 -0.3633 -1.0244 -0.0815 31 1 -0.3633 0.4416 0.9280 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.8655 0.4858 2.1354 35 1 1.6535 1.5891 -2.0826 36 1 3.3949 4.8393 -2.7537 37 1 5.3920 6.1250 -2.0274 38 1 4.0084 5.7278 2.0124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590419947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:33 Heat of formation + Delta-G solvation = 64.907851 kcal Electronic energy + Delta-G solvation = -27300.959750 eV Core-core repulsion = 23307.962675 eV Total energy + Delta-G solvation = -3992.997075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.61328 -41.22872 -38.42170 -37.88252 -36.94438 -35.78875 -35.00275 -34.25103 -33.49324 -32.59262 -32.11039 -29.04174 -26.55838 -26.09354 -24.54383 -24.44083 -23.42912 -22.30189 -20.80389 -20.35481 -19.47672 -18.78529 -18.40748 -18.27577 -17.88498 -17.54130 -17.17481 -16.31497 -15.95975 -15.63658 -15.30668 -15.18450 -15.14320 -14.57264 -14.46324 -13.98500 -13.95965 -13.71438 -13.47722 -13.29022 -13.17439 -13.10979 -12.85174 -12.66082 -12.52422 -12.51210 -12.40825 -12.28430 -12.22760 -11.71010 -11.60954 -11.24976 -10.95125 -10.75992 -10.66950 -10.34563 -10.07498 -8.26251 -6.28855 -0.99987 -0.55300 0.00421 0.10057 0.97507 1.28162 1.31698 1.41521 1.48637 1.98542 2.33751 2.34546 2.44659 2.80316 2.92033 3.03585 3.09741 3.62886 3.75161 3.89834 3.97550 4.03844 4.26864 4.27858 4.35238 4.48757 4.52909 4.67330 4.69798 4.85441 4.97257 5.13408 5.20119 5.29460 5.39192 5.51057 5.58088 5.61377 6.25967 6.40228 6.51427 6.74837 6.95706 7.36344 8.88704 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012144 B = 0.004711 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.058660 B = 5942.164272 C = 7542.143116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 C 0.248 3.752 4 H 0.041 0.959 5 C -0.516 4.516 6 H 0.052 0.948 7 C 0.030 3.970 8 N -0.937 5.937 9 Si 0.918 3.082 10 H -0.260 1.260 11 H -0.303 1.303 12 H -0.248 1.248 13 N -1.082 6.082 14 S 2.720 3.280 15 O -0.968 6.968 16 O -0.970 6.970 17 C -0.432 4.432 18 C -0.084 4.084 19 C -0.047 4.047 20 C -0.024 4.024 21 C 0.206 3.794 22 N -0.279 5.279 23 N -0.047 5.047 24 N -0.194 5.194 25 H 0.497 0.503 26 N -0.284 5.284 27 C 0.114 3.886 28 N -0.404 5.404 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.425 0.575 36 H 0.184 0.816 37 H 0.181 0.819 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 10.186 -1.941 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.173 4.173 3 C 0.141 3.859 4 H 0.059 0.941 5 C -0.556 4.556 6 H 0.070 0.930 7 C -0.169 4.169 8 N -0.577 5.577 9 Si 0.746 3.254 10 H -0.185 1.185 11 H -0.232 1.232 12 H -0.172 1.172 13 N -0.845 5.845 14 S 2.805 3.195 15 O -0.958 6.958 16 O -0.959 6.959 17 C -0.651 4.651 18 C -0.105 4.105 19 C -0.075 4.075 20 C -0.029 4.029 21 C -0.075 4.075 22 N -0.151 5.151 23 N -0.042 5.042 24 N -0.045 5.045 25 H 0.357 0.643 26 N -0.137 5.137 27 C -0.049 4.049 28 N -0.112 5.112 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.262 0.738 36 H 0.202 0.798 37 H 0.198 0.802 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.994 10.640 -1.363 10.773 hybrid contribution 1.553 -0.327 0.880 1.814 sum 0.559 10.313 -0.483 10.339 Atomic orbital electron populations 1.21863 0.94863 1.02357 1.02049 1.22086 0.96271 0.97051 1.01934 1.18858 0.93442 0.91758 0.81841 0.94086 1.21497 0.90989 1.37434 1.05648 0.93024 1.25499 0.95457 0.96230 0.99701 1.70014 1.10519 1.46878 1.30266 0.86322 0.80275 0.80253 0.78581 1.18533 1.23162 1.17172 1.55020 1.85631 1.26561 1.17259 1.01239 0.73115 0.72690 0.72467 1.93562 1.84447 1.83619 1.34134 1.93534 1.56819 1.85641 1.59947 1.33707 1.21555 1.13471 0.96392 1.22203 0.92332 0.94001 1.02013 1.21965 0.96875 0.94050 0.94606 1.18563 0.91285 0.97693 0.95364 1.23282 0.97023 1.01289 0.85885 1.76055 1.01596 1.11621 1.25851 1.78838 1.20113 1.16128 0.89144 1.47783 1.13315 1.32909 1.10504 0.64300 1.74927 1.03537 1.13166 1.22030 1.23280 0.88514 0.91991 1.01155 1.67762 1.20641 1.08183 1.14641 0.91603 0.91001 0.93718 0.90132 0.93538 0.92828 0.73821 0.79841 0.80158 0.80224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.80 9.86 71.98 0.71 -4.09 16 2 C -0.13 -5.04 5.04 30.60 0.15 -4.89 16 3 C 0.25 10.56 1.85 44.24 0.08 10.64 16 4 H 0.04 1.91 6.61 -2.38 -0.02 1.90 16 5 C -0.52 -26.24 9.42 25.60 0.24 -26.00 16 6 H 0.05 2.86 8.06 -2.91 -0.02 2.84 16 7 C 0.03 1.63 5.45 84.65 0.46 2.09 16 8 N -0.94 -54.84 13.96 21.45 0.30 -54.55 16 9 Si 0.92 42.50 24.41 68.60 1.67 44.17 16 10 H -0.26 -11.23 6.83 99.48 0.68 -10.56 16 11 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 12 H -0.25 -10.98 6.53 99.48 0.65 -10.33 16 13 N -1.08 -38.50 4.84 -172.52 -0.83 -39.33 16 14 S 2.72 98.43 5.76 -56.49 -0.33 98.11 16 15 O -0.97 -33.65 17.25 -128.00 -2.21 -35.86 16 16 O -0.97 -40.49 17.26 -128.00 -2.21 -42.70 16 17 C -0.43 -15.89 6.80 84.70 0.58 -15.31 16 18 C -0.08 -2.58 9.54 22.33 0.21 -2.37 16 19 C -0.05 -1.33 9.84 22.67 0.22 -1.11 16 20 C -0.02 -0.74 5.89 -19.95 -0.12 -0.86 16 21 C 0.21 5.88 7.95 137.38 1.09 6.97 16 22 N -0.28 -7.62 12.31 -52.18 -0.64 -8.26 16 23 N -0.05 -1.06 13.47 37.02 0.50 -0.56 16 24 N -0.19 -3.36 7.90 37.02 0.29 -3.06 16 25 H 0.50 3.22 8.96 -347.54 -3.12 0.10 16 26 N -0.28 -6.96 12.11 -52.12 -0.63 -7.59 16 27 C 0.11 4.00 10.87 84.95 0.92 4.93 16 28 N -0.40 -16.01 10.09 -192.46 -1.94 -17.95 16 29 H 0.06 1.88 7.64 -2.39 -0.02 1.86 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.05 1.88 3.22 -2.39 -0.01 1.87 16 34 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 35 H 0.43 12.36 8.85 -96.75 -0.86 11.50 16 36 H 0.18 4.43 7.60 -2.91 -0.02 4.41 16 37 H 0.18 4.04 7.97 -2.91 -0.02 4.02 16 38 H 0.18 5.59 7.90 -2.91 -0.02 5.57 16 Total: -1.00 -73.76 341.85 -4.37 -78.13 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -2.90 Total: 19.45 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 4.56 Total: -30.00 kcal Atomic # 7 Polarization: -128.35 SS G_CDS: -2.96 Total: -131.31 kcal Atomic # 8 Polarization: -74.14 SS G_CDS: -4.42 Total: -78.55 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.67 Total: 44.17 kcal Atomic # 16 Polarization: 98.43 SS G_CDS: -0.33 Total: 98.11 kcal Total: -73.76 -4.37 -78.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.038 kcal (2) G-P(sol) polarization free energy of solvation -73.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds